BP913540
Clone id YMU001_000031_D03
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTTTGCCCATGGGTAGCACATTTGCTGCTTTCTTTTCAACCCGCACAATACCCACATGA
CCACTAGAGGTCAAAGCCTAATTTTCCTACTTGGTACTTTGATCTCCCCATATATCCAAT
GCATAATCATTAGCCCTGTTAGGAATCTGTTGGGGAAGTGGGAATGTATCACCTCCCATC
CTTGTAGGCTTTGAGCAATAAGTGCTGATGTAACCAAGTTTACCACAATTATAACATGTA
GGGATGAACCTCCTCTACGGCTCAAAGACGCCTTGTCCACGACTCACATTAGCATTAGGT
TGAGCTACCATGACCACGAGCGCCTCCATCTCCGCGAGCACTAAGTCACAATTCTTGCAG
CATGGTCATCATG
■■Homology search results ■■ -
sp_hit_id P27536
Definition sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis
Align length 53
Score (bit) 36.2
E-value 0.052
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913540|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D03.
(373 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po P... 36 0.052
sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficien... 35 0.089
sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.089
sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.089
sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.089
sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficienc... 35 0.089
sp|P17282|GAG_SIVCZ Gag polyprotein OS=Simian immunodeficiency v... 35 0.089
sp|O91079|GAG_HV1YF Gag polyprotein OS=Human immunodeficiency vi... 35 0.089
sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency vi... 35 0.089
sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency vi... 35 0.089
sp|O93182|GAG_HV190 Gag polyprotein OS=Human immunodeficiency vi... 35 0.089
sp|P15832|GAG_HV2D2 Gag polyprotein OS=Human immunodeficiency vi... 35 0.15
sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficien... 34 0.20
sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency v... 34 0.20
sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.34
sp|Q76633|GAG_HV2UC Gag polyprotein OS=Human immunodeficiency vi... 33 0.34
sp|Q9QC00|GAG_HV197 Gag polyprotein OS=Human immunodeficiency vi... 33 0.34
sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.44
sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.44
sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.44
sp|Q9QSR4|GAG_HV1VI Gag polyprotein OS=Human immunodeficiency vi... 33 0.44
sp|P05890|GAG_HV1RH Gag polyprotein OS=Human immunodeficiency vi... 33 0.44
sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.58
sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.58
sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficienc... 33 0.58
sp|Q9IDV8|GAG_HV1YB Gag polyprotein OS=Human immunodeficiency vi... 33 0.58
sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency vi... 33 0.58
sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficien... 32 0.75
sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficienc... 32 0.75
sp|Q1A250|GAG_SIVEK Gag polyprotein OS=Simian immunodeficiency v... 32 0.75

>sp|P27536|POST_XENLA Posterior protein OS=Xenopus laevis GN=po PE=2
SV=1
Length = 555

Score = 36.2 bits (82), Expect = 0.052
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -3

Query: 254 RRFIPTCYNCGKLGYISTYCSKPTRMGGDTFPLPQ------QIPNRANDYALD 114
RRF CY+CGK G+I+ +C + + DT+P+ NDY LD
Sbjct: 409 RRFPRKCYSCGKYGHIARFC-RTSANQHDTYPIHSIQRQEGDAQENLNDYLLD 460


>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency
virus (isolate CPZ GAB1) GN=gag-pol PE=3 SV=2
Length = 1384

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE ++V + + +GQG P R+ C+NCGK G+++ C P R G
Sbjct: 311 VLAEAMSMVQNQGRADVFFQKGQGA-GPKRKI--KCFNCGKEGHLARNCKAPRRKG 363


>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency
virus type 1 (isolate YBF30 group N) GN=gag-pol PE=3
SV=3
Length = 1449

Score = 35.4 bits (80), Expect = 0.089
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V QP +V +G F+ R+ I C+NCGK G+++ C P R G
Sbjct: 364 VLAEAMS---QVQQPTTSVFAQRGNFKGIRKPIK-CFNCGKEGHLARNCKAPRRGG 415


>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency
virus type 1 (isolate SE9173 group M subtype J)
GN=gag-pol PE=3 SV=3
Length = 1432

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V N N+ +G F +R + C+NCGK G+I+ C P + G
Sbjct: 362 VLAEAMSQVT-----NTNIMMQRGNFRDHKRIVK-CFNCGKQGHIAKNCRAPRKKG 411


>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency
virus type 1 (isolate SE9280 group M subtype J)
GN=gag-pol PE=3 SV=3
Length = 1432

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V N N+ +G F +R + C+NCGK G+I+ C P + G
Sbjct: 362 VLAEAMSQVT-----NTNIMMQRGNFRDHKRIVK-CFNCGKQGHIAKNCRAPRKKG 411


>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency
virus type 1 (isolate 90CF056 group M subtype H)
GN=gag-pol PE=3 SV=4
Length = 1435

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V N + +G F+ R+F+ C+NCGK G+I+ C P + G
Sbjct: 362 VLAEAMS---QVTNTNTAIMMQKGNFKGQRKFVK-CFNCGKEGHIARNCRAPRKKG 413


>sp|P17282|GAG_SIVCZ Gag polyprotein OS=Simian immunodeficiency
virus (isolate CPZ GAB1) GN=gag PE=3 SV=1
Length = 508

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE ++V + + +GQG P R+ C+NCGK G+++ C P R G
Sbjct: 370 VLAEAMSMVQNQGRADVFFQKGQGA-GPKRKI--KCFNCGKEGHLARNCKAPRRKG 422


>sp|O91079|GAG_HV1YF Gag polyprotein OS=Human immunodeficiency virus
type 1 (isolate YBF30 group N) GN=gag PE=3 SV=3
Length = 512

Score = 35.4 bits (80), Expect = 0.089
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V QP +V +G F+ R+ I C+NCGK G+++ C P R G
Sbjct: 364 VLAEAMS---QVQQPTTSVFAQRGNFKGIRKPIK-CFNCGKEGHLARNCKAPRRGG 415


>sp|Q9WC62|GAG_HV1S9 Gag polyprotein OS=Human immunodeficiency virus
type 1 (isolate SE9173 group M subtype J) GN=gag PE=1
SV=3
Length = 497

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V N N+ +G F +R + C+NCGK G+I+ C P + G
Sbjct: 362 VLAEAMSQVT-----NTNIMMQRGNFRDHKRIVK-CFNCGKQGHIAKNCRAPRKKG 411


>sp|Q9WC53|GAG_HV1S2 Gag polyprotein OS=Human immunodeficiency virus
type 1 (isolate SE9280 group M subtype J) GN=gag PE=3
SV=3
Length = 497

Score = 35.4 bits (80), Expect = 0.089
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3

Query: 341 VLAEMEALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
VLAE + V N N+ +G F +R + C+NCGK G+I+ C P + G
Sbjct: 362 VLAEAMSQVT-----NTNIMMQRGNFRDHKRIVK-CFNCGKQGHIAKNCRAPRKKG 411


tr_hit_id Q4L0E3
Definition tr|Q4L0E3|Q4L0E3_9HIV1 Gag polyprotein (Fragment) OS=Human immunodeficiency virus 1
Align length 49
Score (bit) 38.9
E-value 0.13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913540|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D03.
(373 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4L0E3|Q4L0E3_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 39 0.13
tr|Q2EQ69|Q2EQ69_9HIV1 Gag polyprotein OS=Human immunodeficiency... 39 0.13
tr|B8XBZ5|B8XBZ5_9HIV1 Gag protein (Fragment) OS=Human immunodef... 39 0.13
tr|B8XBX6|B8XBX6_9HIV1 Gag protein (Fragment) OS=Human immunodef... 39 0.13
tr|B8XBN2|B8XBN2_9HIV1 Gag protein (Fragment) OS=Human immunodef... 39 0.13
tr|B8XBN0|B8XBN0_9HIV1 Gag protein (Fragment) OS=Human immunodef... 39 0.13
tr|B8XBL2|B8XBL2_9HIV1 Gag protein (Fragment) OS=Human immunodef... 39 0.13
tr|Q5MCD4|Q5MCD4_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 38 0.22
tr|B8XAF5|B8XAF5_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.22
tr|B3GHP2|B3GHP2_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.22
tr|B3FLT1|B3FLT1_9HIV1 Gag protein OS=Human immunodeficiency vir... 38 0.22
tr|B0FS92|B0FS92_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.22
tr|B0FS90|B0FS90_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.22
tr|B0FS89|B0FS89_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.22
tr|Q8UTT7|Q8UTT7_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.29
tr|Q8UTM4|Q8UTM4_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.29
tr|Q8USU9|Q8USU9_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.29
tr|Q8J4W5|Q8J4W5_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 38 0.29
tr|Q7ZJ30|Q7ZJ30_SIVCZ Gag polyprotein (Fragment) OS=Simian immu... 38 0.29
tr|Q6S7X9|Q6S7X9_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.29
tr|Q5MCG0|Q5MCG0_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 38 0.29
tr|Q5MCD6|Q5MCD6_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 38 0.29
tr|Q4JGA3|Q4JGA3_9HIV1 Gag polyprotein OS=Human immunodeficiency... 38 0.29
tr|Q0PLK6|Q0PLK6_9HIV1 Gag polyprotein (Fragment) OS=Human immun... 38 0.29
tr|B8XBX1|B8XBX1_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29
tr|B8XBM1|B8XBM1_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29
tr|B8XBF4|B8XBF4_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29
tr|B8XBD1|B8XBD1_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29
tr|B8XAE9|B8XAE9_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29
tr|B8XAC4|B8XAC4_9HIV1 Gag protein (Fragment) OS=Human immunodef... 38 0.29

>tr|Q4L0E3|Q4L0E3_9HIV1 Gag polyprotein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 141

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 88 LAEAMSQTNSNIMMQRGNFKGPRRIVK-CFNCGKEGHIAKNCRAPRKKG 135


>tr|Q2EQ69|Q2EQ69_9HIV1 Gag polyprotein OS=Human immunodeficiency
virus 1 GN=gag PE=4 SV=1
Length = 491

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 360 LAEAMSQANSNIMMQRGNFKGPRRIVK-CFNCGKEGHIAKNCRAPRKKG 407


>tr|B8XBZ5|B8XBZ5_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 491

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 360 LAEAMSQANSNIMMQRGNFKGPRRIVK-CFNCGKEGHIAKNCRAPRKKG 407


>tr|B8XBX6|B8XBX6_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 502

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3

Query: 326 EALVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
EA+ ++Q N N+ +G F+ +R + C+NCGK G+I+ C P + G
Sbjct: 362 EAMAEAMSQANNNIMMQRGNFKGPKRVVK-CFNCGKEGHIAKNCRAPRKRG 411


>tr|B8XBN2|B8XBN2_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 497

Score = 38.9 bits (89), Expect = 0.13
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q NAN+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 360 LAEAMSQNNANIMMQRGNFKGPRRTVK-CFNCGKEGHIARNCRAPRKKG 407


>tr|B8XBN0|B8XBN0_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 436

Score = 38.9 bits (89), Expect = 0.13
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q NAN+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 299 LAEAMSQNNANIMMQRGNFKGPRRTVK-CFNCGKEGHIARNCRAPRKKG 346


>tr|B8XBL2|B8XBL2_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 364

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ RR + C+NCGK G+I+ C P + G
Sbjct: 232 LAEAMSQTNSNIMMQRGNFKGARRIVK-CFNCGKEGHIARNCRAPRKKG 279


>tr|Q5MCD4|Q5MCD4_9HIV1 Gag polyprotein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 491

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ +R + C+NCGK G+I+ C P + G
Sbjct: 360 LAEAMSQTNSNIMMQRGNFKSPKRIVK-CFNCGKEGHIARNCRAPRKKG 407


>tr|B8XAF5|B8XAF5_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 491

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ +R + C+NCGK G+I+ C P + G
Sbjct: 360 LAEAMSQTNSNIMMQRGNFKSPKRIVK-CFNCGKEGHIARNCRAPRKKG 407


>tr|B3GHP2|B3GHP2_9HIV1 Gag protein (Fragment) OS=Human
immunodeficiency virus 1 GN=gag PE=4 SV=1
Length = 136

Score = 38.1 bits (87), Expect = 0.22
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -3

Query: 320 LVVMVAQPNANVSRGQGVFEP*RRFIPTCYNCGKLGYISTYCSKPTRMG 174
L ++Q N+N+ +G F+ +R + C+NCGK G+I+ C P + G
Sbjct: 5 LAEAMSQTNSNIMMQRGNFKSPKRIVK-CFNCGKEGHIARNCRAPRKKG 52