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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913542
Clone id YMU001_000031_D05
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGATACCCTTTGAAGAATGGGTTGAAATGCATGGTATTGCCAGAGGAAGGGAGGAAGCGG
TGCACATCTCACAAGGGAAGCGCGTCAGAATGCCATATGTTGATGGTGTGTAATGGAAGG
ATCTTGTGCCTTCGAATGATGACTTGGTTCTTTGTATCAGAAGCTCAGGCAAATGCCCTG
TTTCTGCACATGTTGTTGCCAAGGCAGCGATTCGGCAGCTCTTGTGGTGAGGGTGCTCAC
TTTGAGAGAGTTCACTTTGTCAGCTTAAGCTTCAGCTTTTTCCCTGACCTGCTAATCCAT
GAAAGAAGAGGTAGGAGTCGAAGGTTGTGGATTTATGATACCATGCAATGTATTGGATTG
ACAACAAAAGGCAATGAGGCTGTGGCATGTAATGTGTGAAGTTGCATCAAAGCGTATTTT
ATTAAAGGATGGTCTGCCTCTCTGGTGGCCTAAGAGACCACACACACGGCCTTGGAATTG
GATCACAGGATATTTGAACTCATTTCTTTGGGGATATTTGGAGTTGTAATTGCTCCAAGC
TGATCTCCA
■■Homology search results ■■ -
sp_hit_id Q553R3
Definition sp|Q553R3|IF4G_DICDI Eukaryotic translation initiation factor 4 gamma OS=Dictyostelium discoideum
Align length 36
Score (bit) 34.7
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913542|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D05.
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q553R3|IF4G_DICDI Eukaryotic translation initiation factor 4 ...    35   0.32 
sp|Q08470|L2GL_DROPS Protein lethal(2) giant larvae OS=Drosophil...    33   1.2  
sp|P42028|NDUS8_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfu...    31   3.5  
sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophil...    31   4.6  
sp|Q4IBL8|DML1_GIBZE Protein DML1 OS=Gibberella zeae GN=DML1 PE=...    30   6.0  
sp|Q9H4B0|OSGP2_HUMAN Probable O-sialoglycoprotein endopeptidase...    30   7.8  

>sp|Q553R3|IF4G_DICDI Eukaryotic translation initiation factor 4
           gamma OS=Dictyostelium discoideum GN=eif4g PE=3 SV=1
          Length = 1377

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 525 NSKYPQRNEFKYPVIQFQGRVCGLLGHQRGRPSFNK 418
           N KYP +   KYP   +  +V G    Q+G P+FNK
Sbjct: 665 NMKYPPQMNMKYPPKNYNNQVQGQQQQQQGNPNFNK 700


>sp|Q08470|L2GL_DROPS Protein lethal(2) giant larvae OS=Drosophila
           pseudoobscura pseudoobscura GN=l(2)gl PE=1 SV=3
          Length = 1166

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 157 SEAQANALFLHMLLPRQRFGSSCGEGAHFERVHFVSLSFSFFPDLL 294
           SE Q     L  L P  ++  +  EGA   R+HF S S    P+LL
Sbjct: 818 SEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPELL 863


>sp|P42028|NDUS8_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial OS=Bos taurus GN=NDUFS8 PE=1
           SV=1
          Length = 212

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 12/36 (33%), Positives = 26/36 (72%)
 Frame = -1

Query: 249 SLKVSTLTTRAAESLPWQQHVQKQGICLSF*YKEPS 142
           S+ + ++T RAA++L W + ++  G+ LS+ ++EP+
Sbjct: 47  SMDMKSVTDRAAQTLLWTELIRGLGMTLSYLFREPA 82


>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophila
           melanogaster GN=l(2)gl PE=1 SV=2
          Length = 1161

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 157 SEAQANALFLHMLLPRQRFGSSCGEGAHFERVHFVSLSFSFFPDLL 294
           SE Q     L  L P  ++  +  EGA   R+HF S S    P+ L
Sbjct: 817 SEEQFKVFSLPQLKPINKYKLTANEGARIRRIHFGSFSCRISPETL 862


>sp|Q4IBL8|DML1_GIBZE Protein DML1 OS=Gibberella zeae GN=DML1 PE=3
           SV=1
          Length = 484

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = -1

Query: 540 AWSNYNSKYPQ--RNEFKYPVIQFQGRVCGLLGHQRGRPSFNKIRFDATSHITCHSLIAF 367
           AW  + S Y +  R++F    I   G    LL   R +     +        T HS+   
Sbjct: 190 AWGGFTSSYLESLRDDFPKTTIWTWGLQSPLLDISRAKRQLRLVN-------TAHSIEQL 242

Query: 366 CCQSNTLHGIINPQPSTPTSSFMD 295
           C QS T+  +  P+    TS  MD
Sbjct: 243 CTQSTTVVPLALPEEDMTTSVSMD 266


>sp|Q9H4B0|OSGP2_HUMAN Probable O-sialoglycoprotein endopeptidase 2
           OS=Homo sapiens GN=OSGEPL1 PE=2 SV=2
          Length = 414

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 195 QHVQKQGICLSF*YKEPSHHSKAQDPSITHHQHM 94
           +H+ KQG    F  K P HH+K  D S T  QH+
Sbjct: 226 EHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQHV 259
tr_hit_id Q9SZI8
Definition tr|Q9SZI8|Q9SZI8_ARATH Putative transcription factor (Fragment) OS=Arabidopsis thaliana
Align length 26
Score (bit) 35.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913542|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D05.
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SZI8|Q9SZI8_ARATH Putative transcription factor (Fragment) ...    35   2.6  
tr|A2RQG7|A2RQG7_BRANA Effector of transcription OS=Brassica nap...    35   2.6  
tr|A9T912|A9T912_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.4  
tr|B6SKF8|B6SKF8_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.5  
tr|B4FAI2|B4FAI2_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.5  
tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura pseud...    34   5.8  
tr|Q2LQ19|Q2LQ19_SYNAS Molybdopterin converting factor, large su...    34   5.9  
tr|A7PEA3|A7PEA3_VITVI Chromosome chr11 scaffold_13, whole genom...    34   5.9  
tr|Q9FJT5|Q9FJT5_ARATH Similarity to transcription repressor OS=...    33   7.7  
tr|O04047|O04047_ARATH Putative transcription factor (Fragment) ...    33   7.7  
tr|A9U302|A9U302_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.7  
tr|A9TCB1|A9TCB1_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.7  
tr|B4JZU1|B4JZU1_DROGR GH24002 OS=Drosophila grimshawi GN=GH2400...    33   7.7  
tr|O81990|O81990_HORVU Putative transcription repressor HOTR OS=...    33   10.0 

>tr|Q9SZI8|Q9SZI8_ARATH Putative transcription factor (Fragment)
           OS=Arabidopsis thaliana GN=F20B18.280 PE=2 SV=1
          Length = 349

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G  L++G  C   P +GRKRCT HKG
Sbjct: 150 GVLLEDGTTCTTTPVKGRKRCTEHKG 175



 Score = 33.5 bits (75), Expect = 7.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G+ L NG  C   P +GRKRC  HKG
Sbjct: 319 GFKLYNGSVCEKSPVKGRKRCEEHKG 344


>tr|A2RQG7|A2RQG7_BRANA Effector of transcription OS=Brassica napus
           PE=2 SV=1
          Length = 440

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 13  KNGLKCMVLPEEGRKRCTSHKGSASEC 93
           ++G  C+  P  GRKRCT HKG    C
Sbjct: 252 EDGTTCLTAPVTGRKRCTEHKGQRITC 278


>tr|A9T912|A9T912_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168719 PE=4 SV=1
          Length = 610

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKGSASE 90
           G PL+NG  C  LP +G KRC  HK S  +
Sbjct: 387 GAPLENGNPCNALPVKGGKRCLLHKDSKKQ 416


>tr|B6SKF8|B6SKF8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 387

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G    +G +CM +P EGRKRC  HKG
Sbjct: 351 GARTSDGSRCMNMPIEGRKRCALHKG 376


>tr|B4FAI2|B4FAI2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 538

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G    +G +CM +P EGRKRC  HKG
Sbjct: 502 GARTSDGSRCMNMPIEGRKRCALHKG 527


>tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA10918 PE=4 SV=2
          Length = 1002

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 217  CRIAALATTCAETGH-LPELLIQRTKSSFEGTRSFHYTPSTYGILTRFPCEMCTASSLPL 41
            CR  A AT    TG  LP     RTKS  E T S H    T+G  +  P        LP+
Sbjct: 893  CRAKAQATAATATGTPLPSRRFLRTKSEIESTASIHAIGRTFGRKSNGP-------RLPI 945

Query: 40   AIPCISTHSSKGI 2
            +I   + H  + I
Sbjct: 946  SISVQALHRGEPI 958


>tr|Q2LQ19|Q2LQ19_SYNAS Molybdopterin converting factor, large
           subunit OS=Syntrophus aciditrophicus (strain SB)
           GN=SYNAS_01530 PE=4 SV=1
          Length = 125

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 154 VSEAQANALFLHMLLPRQRFGSSCGEGAHFERV 252
           + +++  ++ LH  + +Q+ GSS  EG HFERV
Sbjct: 18  IEKSRGGSVLLHYAVVKQKVGSSVSEGIHFERV 50


>tr|A7PEA3|A7PEA3_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016588001
           PE=4 SV=1
          Length = 547

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G  L+NG  C  +P  GRKRC  HKG
Sbjct: 519 GVLLRNGSVCSRVPAHGRKRCEQHKG 544


>tr|Q9FJT5|Q9FJT5_ARATH Similarity to transcription repressor
           OS=Arabidopsis thaliana GN=At5g56780 PE=4 SV=1
          Length = 488

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G  L NGL C   P +GRKRC  HKG
Sbjct: 459 GVKLGNGLICERSPVKGRKRCEEHKG 484


>tr|O04047|O04047_ARATH Putative transcription factor (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 349

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   GYPLKNGLKCMVLPEEGRKRCTSHKG 78
           G+ L NG  C   P +GRKRC  HKG
Sbjct: 319 GFKLYNGSVCEKSPVKGRKRCEEHKG 344