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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913545
Clone id YMU001_000031_D08
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGGTATTACCCTAGGTACTATGGTTAGCGCCATGCAACCCGGAGATGCGAGGAACCCGG
AGATGTTGAGGATGCAGACGCTTTGCTGCTCAGTTCGAGGATATTATGAGCTTCGACTCT
GCGCAGGAGCTGCACTCAGTGCGAGGAACTGTAGGCGTAGCGTGCTCTGGAGGGGTTAGG
TGAGCATGAGTATGAGGCTAGGTAGATAACAGAGAGATGCTAATGCTTATAGCAGCTATG
CAGCGACCTGTGGATTAATGCAGCAGATTCGCACTGTGCGCTATAGGTTATGGGTATCAT
GCGATGGTGAGTGGCACTGGCGAGAGAAGCAAGAGATGAGGTGAAGTAGTGTGTCGCCTG
TGATTGTGTATAACGTGCGAGCAGAAATGTGAGGTGTTAGACAAAGCAGTGCGAGGGCGA
GTTTGCCGAGCTGGTTAGCAGCGCTAAGTGTATTGTGGG
■■Homology search results ■■ -
sp_hit_id P16061
Definition sp|P16061|CHI8_POPTR Endochitinase WIN8 OS=Populus trichocarpa
Align length 53
Score (bit) 30.0
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913545|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D08.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16061|CHI8_POPTR Endochitinase WIN8 OS=Populus trichocarpa G...    30   5.0  

>sp|P16061|CHI8_POPTR Endochitinase WIN8 OS=Populus trichocarpa
           GN=WIN8 PE=2 SV=1
          Length = 316

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   GITLGTMVSAMQPGDARNPEMLRMQTLCCSVRGYYELRL---CAGAALSARNC 152
           G++  T     Q G+A  P       LCCS  GY  L +   CAG     RNC
Sbjct: 18  GVSSDTAQCGSQAGNATCPN-----DLCCSSGGYCGLTVAYCCAGCVSQCRNC 65
tr_hit_id A9RKY0
Definition tr|A9RKY0|A9RKY0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 99
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913545|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_D08.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RKY0|A9RKY0_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  

>tr|A9RKY0|A9RKY0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_67509 PE=4 SV=1
          Length = 243

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
 Frame = +3

Query: 87  CSVRGYYELRLCAGAALSARNCRRSVLWRG*VSMSMRLGR*QRDANA---YSSYAATCGL 257
           C VRG  +    +   LS  + ++ + WRG   +S      Q D +A   + SY+   G 
Sbjct: 81  CGVRGDRQ----SAVLLSGVSTKQWMRWRGVSCLSSWQALAQHDLHAQQDFHSYSPQLGG 136

Query: 258 MQQIRTVRYRL-WVSCDGEW-HWREKQEMR*SSVSPVIV 368
                T+R+R    S +  W +WRE  +M  +S SPV+V
Sbjct: 137 SNSCITLRFRSDLTSTEQPWCNWREVLKMSVASPSPVVV 175