NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913563
Clone id YMU001_000031_F06
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGAGGAACTAAGTGCTCAGAAGCCAGGACGATCCAAAGGCTTTCGCAGAAACTTCCAGA
GGTTTGGCGAGAAAGCTCCCCCAAAGTGGACCTGGTAAGGATGAAGCTGAAGAGTCAATC
AAGGCCTCAGTTGAGTGCCTGGAAGAAGAGGGACAGCAAGTCAAGGGCAGACTTGACCAC
GCTGACAAAACAGATCCGAGGATGAAAAATTCTCAGCTGCAATCCGATTCGTCACTAAAA
GATCAATTAGCCAGGAGACGCAGAAGGCCAACAGAGGCATGACACTGCGAAGACAGTCAT
TCGGAGGGAAGGTCCTCTAGCTCAGAAAGCAGCTCTGGCAATCAACAGGATGGAATCTAT
ACGAAGATTTGCGAGAGGATTCAGAAGCTAAAGAGTTAGATGACATTAGATGGATCTTAC
CAAAGGCTACAAAGTTGATCAGAACCCAAAGAGAGAAAGCATCAGAAGCTATGGCCGTAG
ACTTGTCTGAAATACACGATGGAAGTGCTAGTCATCCAAATCGACTA
■■Homology search results ■■ -
sp_hit_id P53624
Definition sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A OS=Drosophila melanogaster
Align length 55
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913563|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_F06.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53624|MA121_DROME Mannosyl-oligosaccharide alpha-1,2-mannosi...    32   1.9  
sp|O95613|PCNT_HUMAN Pericentrin OS=Homo sapiens GN=PCNT PE=1 SV=3     32   2.4  
sp|Q5R7E7|NGRN_PONAB Neugrin OS=Pongo abelii GN=NGRN PE=2 SV=1         32   2.4  
sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase OS=Caenorha...    31   3.2  
sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=P...    31   4.1  
sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PEL...    31   4.1  
sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=P...    30   5.4  
sp|Q32PI1|VRK1_BOVIN Serine/threonine-protein kinase VRK1 OS=Bos...    30   7.1  
sp|Q6L0S6|DNAJ_PICTO Chaperone protein dnaJ OS=Picrophilus torri...    30   7.1  
sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes prot...    30   9.2  

>sp|P53624|MA121_DROME Mannosyl-oligosaccharide
           alpha-1,2-mannosidase isoform A OS=Drosophila
           melanogaster GN=alpha-Man-I PE=1 SV=2
          Length = 667

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +1

Query: 19  RSQDDPKAFAETSRGLARKLPQSGPGKDEAEESIKASVECLEEEGQQVKGRLDHA 183
           ++   P++ A+       +LP  G G D+A +++ A+   LEE  Q+VK  ++HA
Sbjct: 160 QASSHPQSSAQQHNQQQPQLPLGGGGNDQAPDTLDAT---LEERRQKVKEMMEHA 211


>sp|O95613|PCNT_HUMAN Pericentrin OS=Homo sapiens GN=PCNT PE=1 SV=3
          Length = 3336

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 25  QDDPKAFAETSRGLARKLPQSGPGKDEAEESIKASVECLEEEGQQVKGRLDHADKTDP 198
           +D  K + E    L ++L   G  +D   +S++  + C+  E +  KGR DH D+ +P
Sbjct: 528 RDAEKTYQEDLTLLQQRL--QGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEP 583


>sp|Q5R7E7|NGRN_PONAB Neugrin OS=Pongo abelii GN=NGRN PE=2 SV=1
          Length = 219

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
 Frame = +2

Query: 32  IQRLSQKLPEVWRESSPKV--------DLVRMKLKSQSRPQLSAWKKRDSK--SRADLTT 181
           I+ L ++ PE W  S P++        D++R  LKS+  P L    K+D K   +A L  
Sbjct: 19  IRYLHEEFPESW--SVPRLAEGFDVSTDVIRRVLKSKFLPTLEQKLKQDQKVLKKAGLAP 76

Query: 182 LTKQIRG 202
           L +Q+RG
Sbjct: 77  LLQQLRG 83


>sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase
           OS=Caenorhabditis elegans GN=B0001.4 PE=2 SV=2
          Length = 248

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = +2

Query: 2   GGTKCSEARTIQRLSQKLPEVWRESSPKVDLVRMKLKSQSRPQLSAWKK 148
           GGT C ++  ++R+ + L    ++S  ++D+V + L S  R +LSA +K
Sbjct: 15  GGTSCGKSTIVERIIENLNANAKQSGRQIDIVHLSLHSFYR-ELSAEEK 62


>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO
           PE=1 SV=1
          Length = 385

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +3

Query: 270 NRGMTLRRQSFGGKVL*LRKQLWQSTGWNLYEDLREDSEAKELDDIRWIL---PKATKLI 440
           NR   L+  +  G    L++ L   T  +   D +   E K LDD   +L   P      
Sbjct: 236 NRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYG 295

Query: 441 RTQREKASEAMAVDLSEIHDGSASH 515
             Q EKA+EAMA+D   I D    H
Sbjct: 296 LKQVEKANEAMAIDTLLISDELFRH 320


>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO
           PE=2 SV=2
          Length = 385

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +3

Query: 270 NRGMTLRRQSFGGKVL*LRKQLWQSTGWNLYEDLREDSEAKELDDIRWIL---PKATKLI 440
           NR   L+  +  G    L++ L   T  +   D +   E K LDD   +L   P      
Sbjct: 236 NRSKFLQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYG 295

Query: 441 RTQREKASEAMAVDLSEIHDGSASH 515
             Q EKA+EAMA+D   I D    H
Sbjct: 296 LKQVEKANEAMAIDTLLISDELFRH 320


>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO
           PE=2 SV=1
          Length = 385

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = +3

Query: 270 NRGMTLRRQSFGGKVL*LRKQLWQSTGWNLYEDLREDSEAKELDDIRWIL---PKATKLI 440
           NR   L+  +  G    L++ L   T  +   D +   E K LDD   +L   P      
Sbjct: 236 NRSKFLQVHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHGPDRAFYG 295

Query: 441 RTQREKASEAMAVDLSEIHDGSASH 515
             Q EKA+EAMA+D   I D    H
Sbjct: 296 LKQVEKANEAMAIDTLLISDELFRH 320


>sp|Q32PI1|VRK1_BOVIN Serine/threonine-protein kinase VRK1 OS=Bos
           taurus GN=VRK1 PE=2 SV=1
          Length = 396

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 22  SQDDPKA-FAETSRGLARKLPQSGPGKDEAEESIKASVECLEEEGQQVKGRLDHADKTDP 198
           S+DD K        G  +  P +   K EAEES+++SVE +E   +Q +       KT  
Sbjct: 333 SKDDGKLDLTVVENGSLKAKPVAKKRKKEAEESVESSVEDMECSDKQTEEATQTRSKTRK 392

Query: 199 RMK 207
           R++
Sbjct: 393 RVQ 395


>sp|Q6L0S6|DNAJ_PICTO Chaperone protein dnaJ OS=Picrophilus torridus
           GN=dnaJ PE=3 SV=1
          Length = 357

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 22  SQDD-PKAFAETSRGLARKL-PQSGPGKDEAEESIKASVECLEE-EGQQVKGRLDHADKT 192
           SQDD  KAF E    LA+K  P + PG  EAEE  K   E  E     Q + + D    T
Sbjct: 16  SQDDIKKAFRE----LAKKYHPDANPGNKEAEEKFKEIAEAYEVLSDPQKRKQYDETGTT 71

Query: 193 D 195
           D
Sbjct: 72  D 72


>sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein
           1B OS=Homo sapiens GN=SMC1B PE=1 SV=2
          Length = 1235

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 100 DEAEESIKASVECLEEEGQQVKGRLDHADKTDPRM 204
           ++ EE  K  ++CL+E+ QQ +  +D  +KT  RM
Sbjct: 436 EKLEEYTKTCMDCLKEKKQQEETLVDEIEKTKSRM 470
tr_hit_id Q2H2R1
Definition tr|Q2H2R1|Q2H2R1_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 106
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913563|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_F06.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2H2R1|Q2H2R1_CHAGB Putative uncharacterized protein OS=Chaet...    36   1.4  
tr|A5EVP2|A5EVP2_DICNV Diphosphomevalonate decarboxylase OS=Dich...    34   4.0  
tr|A6Q9Q2|A6Q9Q2_SULNB C4-dicarboxylate transporter, substrate-b...    33   8.8  

>tr|Q2H2R1|Q2H2R1_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_03935 PE=4 SV=1
          Length = 1039

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
 Frame = +3

Query: 207 KFSAAIRFVTKRSISQETQKANRGMTLRRQSFGGKVL*LRKQLWQSTGWNLYEDLREDSE 386
           K  A    +TK  I+Q T +A       RQ  G       K+L  +T  +LY  L+   +
Sbjct: 197 KIRAVYPKMTKEMITQATPEALADQATVRQVLGTV-----KKLRATTAASLYRQLQNYVD 251

Query: 387 AKELDDIR----WILPKATKLIRTQREKASEAMAVDLSEIHDGSAS 512
           +KE D  R    W L K  ++       A+ A  VDL  + D +A+
Sbjct: 252 SKEKDTERRMEYWPLIKVVRIFTKASALATGACIVDLPGVQDSNAA 297


>tr|A5EVP2|A5EVP2_DICNV Diphosphomevalonate decarboxylase
           OS=Dichelobacter nodosus (strain VCS1703A) GN=mvaD PE=4
           SV=1
          Length = 328

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 144 FQALN*GLD*LFSFILTRSTLGELSRQTSGSFCESLW 34
           F AL   L+  F + L+R  L +++R+ SGS C SLW
Sbjct: 106 FAALTLALNDFFQWSLSREQLSQIARRGSGSACRSLW 142


>tr|A6Q9Q2|A6Q9Q2_SULNB C4-dicarboxylate transporter,
           substrate-binding protein OS=Sulfurovum sp. (strain
           NBC37-1) GN=SUN_1257 PE=4 SV=1
          Length = 365

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 59  EVWRESSPKVDLVRMKLKSQSRPQLSAWKKRDSKSRADLTTLTKQIRG-----*KILSCN 223
           E+WRE   K +L  + +   + PQ+  W K++ KS ADL  L  +I G      K L  N
Sbjct: 144 ELWRELYGKFNLYPL-IGGTTGPQMGGWFKKEIKSLADLKGLKMRIPGLGGEVMKRLGVN 202

Query: 224 PI 229
           P+
Sbjct: 203 PV 204