BP913566
Clone id YMU001_000031_F09
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTAACATGGAGACATACTCCTTCCTTTCTTCATTGGTTAACTCATTTGAGAGCATTTTTT
GTAGCTTACCTACATCCTCCAATGAGTGCATACCTGATGATCCCTCTTGGTTTGCCGAGG
TTGCTTCAGATTGTGTTAATCTTCCTGGGTCTTTAAGAATGACTCCCATTACTTCGATGC
TACTGTCACTCCCGTCAGTGGTGGTCGTGTCTTCTCTTGAGGTAGACGAGTAGTCGCTGG
TGGACTCGTCTTCTGAAGCCTCCAAGATCATGTTGCGCTGCTTTCCAATCCTCATGTCGT
AGAATAATGGACTTCCCTTTAGCATCCTTCATCTGGATCAGCCCAGTGCTCCAGTTTTGT
TTAGCTTCCATAGCCATAAGCCAAGGCCTTCCAAGAATAATGGGGTAGCCATCCCCTTTG
TGTGGCATGACGAAGATATCTACCTCCACTTCTGTATTGAATGCTTTTACTTTGACCGCA
TTTACAATGCCTACGCATTTTACTCTTACATTGTTTGCCATCTTGACTCGGCAGGGTGCC
GAGTACCTGCAGGTAATATCTC
■■Homology search results ■■ -
sp_hit_id Q05174
Definition sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardia lactamdurans
Align length 35
Score (bit) 30.4
E-value 6.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913566|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_F09.
(562 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardi... 30 6.2
sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader peptid... 30 6.3
sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader peptid... 30 6.3
sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associat... 30 8.1
sp|Q2NEB3|METK_METST S-adenosylmethionine synthetase OS=Methanos... 30 8.2

>sp|Q05174|LAT_NOCLA L-lysine-epsilon aminotransferase OS=Nocardia
lactamdurans GN=lat PE=3 SV=1
Length = 450

Score = 30.4 bits (67), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3

Query: 51 SIFCSLPTSSN-ECIPDDPSWFAEVASDCVNLPGS 152
S F S P N CI DDP++ E+A+ VN P +
Sbjct: 60 SFFASAPLGINPSCIVDDPAFVGELAAAAVNKPSN 94


>sp|P0C423|LEP4_AERSA Type 4 prepilin-like proteins leader
peptide-processing enzyme OS=Aeromonas salmonicida
GN=tapD PE=3 SV=1
Length = 291

Score = 30.4 bits (67), Expect = 6.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1

Query: 253 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 402
L PRSCC + + PL S++W+ + C A+I+ L ++
Sbjct: 68 LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|A2T195|LEP4_AERS4 Type 4 prepilin-like proteins leader
peptide-processing enzyme OS=Aeromonas salmonicida
(strain A449) GN=tapD PE=3 SV=1
Length = 291

Score = 30.4 bits (67), Expect = 6.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1

Query: 253 LKPPRSCCAAFQSSCRRIMDFPLASFIWISPVLQFCLASIAISQGLPRIM 402
L PRSCC + + PL S++W+ + C A+I+ L ++
Sbjct: 68 LMVPRSCCPRCNHPITALENIPLLSWLWLKGRCRGCQAAISARYPLVELL 117


>sp|P62285|ASPM_BOVIN Abnormal spindle-like microcephaly-associated
protein homolog (Fragment) OS=Bos taurus GN=ASPM PE=2
SV=1
Length = 3371

Score = 30.0 bits (66), Expect = 8.1
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3

Query: 362 KQNWSTGLIQMKDAKGKSIILRHEDWKAAQHDLGGFRRRVHQRLLVYLKRRH 207
K W+T +IQ + K L+H+ KAA GF+ V +RL+ +RRH
Sbjct: 2491 KLQWATKVIQERYRASKRKALQHDALKAATCARAGFQDMVVRRLIE--ERRH 2540


>sp|Q2NEB3|METK_METST S-adenosylmethionine synthetase
OS=Methanosphaera stadtmanae (strain DSM 3091) GN=mat
PE=3 SV=1
Length = 407

Score = 30.0 bits (66), Expect = 8.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1

Query: 112 NQEGSSGMHSLEDVGKLQKMLSNELTNE 29
+ E +SG + + VGK+ +LSNE+T E
Sbjct: 306 SMEATSGKNPINHVGKIYNLLSNEITRE 333


tr_hit_id Q01M69
Definition tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa
Align length 51
Score (bit) 39.3
E-value 0.15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913566|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_F09.
(562 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa G... 39 0.15
tr|A9RWZ8|A9RWZ8_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.19
tr|A9S3I7|A9S3I7_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.33
tr|A9RIE9|A9RIE9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.56
tr|Q947Y6|Q947Y6_ORYSA Putative retroelement OS=Oryza sativa GN=... 37 0.73
tr|Q10RT1|Q10RT1_ORYSJ Retrotransposon protein, putative, unclas... 37 0.73
tr|A9T4A8|A9T4A8_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.73
tr|A9RTQ9|A9RTQ9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.73
tr|A9RIU4|A9RIU4_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.73
tr|A9TY16|A9TY16_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.95
tr|A9S3K6|A9S3K6_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.95
tr|A9RCE7|A9RCE7_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.95
tr|Q94HV4|Q94HV4_ORYSA Putative retroelement OS=Oryza sativa GN=... 36 1.2
tr|Q7XFZ5|Q7XFZ5_ORYSJ Os10g0317000 protein OS=Oryza sativa subs... 36 1.2
tr|Q0E1N0|Q0E1N0_ORYSJ Os02g0323900 protein OS=Oryza sativa subs... 36 1.2
tr|A9TR71|A9TR71_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9T9T9|A9T9T9_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9T699|A9T699_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9T5Z4|A9T5Z4_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9T4A9|A9T4A9_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9S220|A9S220_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9RV53|A9RV53_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9RUF7|A9RUF7_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9RAS5|A9RAS5_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|Q2R8K8|Q2R8K8_ORYSJ Putative uncharacterized protein OS=Oryza... 36 1.6
tr|A9U2F8|A9U2F8_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.6
tr|A9U121|A9U121_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.6
tr|A9TMZ2|A9TMZ2_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.6
tr|A9TKM0|A9TKM0_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.6
tr|A9T8V3|A9T8V3_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.6

>tr|Q01M69|Q01M69_ORYSA OSIGBa0114M03.4 protein OS=Oryza sativa
GN=OSIGBa0114M03.4 PE=4 SV=1
Length = 1448

Score = 39.3 bits (90), Expect = 0.15
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAM 369
+AN RV C+G++ + D+FVMP GY ++LG WL A+
Sbjct: 385 VANGERVTCIGVIRGAPLTIGGNSFPADLFVMPLA--GYDVVLGTRWLGAL 433


>tr|A9RWZ8|A9RWZ8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_71639 PE=4 SV=1
Length = 700

Score = 38.9 bits (89), Expect = 0.19
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS 348
++ ANN+R K G VK++ + +E FV YP+ILG+P++ A + +Q +
Sbjct: 540 IRGANNIRGKLYGACPDVKIRIGDVAMEQHFFVQVTIS--YPLILGQPYITATQMEQKYL 597

Query: 347 TGLIQMKDAKGKSI 306
T ++ ++ + K +
Sbjct: 598 TMVLLIQGLREKPL 611


>tr|A9S3I7|A9S3I7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_74096 PE=4 SV=1
Length = 1273

Score = 38.1 bits (87), Expect = 0.33
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS 348
++ ANN R + G VK++ + E FV YP+ILG+P++MA + N
Sbjct: 629 IRAANNTRGELYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYIMATRMETN-- 684

Query: 347 TGLIQMKDAKGKSIILRHEDWKAAQ---HDLGGFRRRVHQR 234
+ D + I + KA Q D GG + V R
Sbjct: 685 ----VLDDGSAYARIRSEDGRKAVQFLTRDYGGTKEEVLSR 721


>tr|A9RIE9|A9RIE9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66547 PE=4 SV=1
Length = 669

Score = 37.4 bits (85), Expect = 0.56
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAK 360
++ ANN R + G VK++ N +E FV YP+ILG+P++MA ME K
Sbjct: 429 IRAANNTRGELYGACPDVKIRIGNVAMEQHFFVQDTTS--YPLILGQPYIMATQMETK 484


>tr|Q947Y6|Q947Y6_ORYSA Putative retroelement OS=Oryza sativa
GN=OSJNBa0067N01.10 PE=4 SV=1
Length = 1461

Score = 37.0 bits (84), Expect = 0.73
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -3

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS-T 345
+AN +V C G++ + VD++VMP GY I+LG W MA + +W T
Sbjct: 390 VANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLA--GYDIVLGTQW-MAKLGRMSWDVT 446

Query: 344 GLIQMKDAKGKSIILRHEDWKAAQHDLG 261
D +G++I W+ A + G
Sbjct: 447 TRALTFDLEGRTIC-----WQGAPNQDG 469


>tr|Q10RT1|Q10RT1_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os03g05350 PE=4 SV=1
Length = 1461

Score = 37.0 bits (84), Expect = 0.73
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -3

Query: 521 MANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAKQNWS-T 345
+AN +V C G++ + VD++VMP GY I+LG W MA + +W T
Sbjct: 390 VANGEKVACPGVLRHAPITIEGMPFHVDLYVMPLA--GYDIVLGTQW-MAKLGRMSWDVT 446

Query: 344 GLIQMKDAKGKSIILRHEDWKAAQHDLG 261
D +G++I W+ A + G
Sbjct: 447 TRALTFDLEGRTIC-----WQGAPNQDG 469


>tr|A9T4A8|A9T4A8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_87895 PE=4 SV=1
Length = 956

Score = 37.0 bits (84), Expect = 0.73
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAMEAK-QNW 351
V ANN R K G VK++ + E FV YP+ILG+P++ A + + +
Sbjct: 688 VDHANNTRGKLYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYITATRIETKRY 745

Query: 350 STGLIQMKDAKGKSIILRHEDWKAAQHDLGGFRRRVHQRL 231
G++ + A S I E+ + F+R+ +RL
Sbjct: 746 KRGVLLREGAFDASFIGILENGNIMYKKVEDFKRKERKRL 785


>tr|A9RTQ9|A9RTQ9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_70435 PE=4 SV=1
Length = 951

Score = 37.0 bits (84), Expect = 0.73
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAKQN 354
V ANN R + G VK++ + +E FV YP+ILG+P+ MA ME K
Sbjct: 565 VDHANNTRGELYGACLDVKIRIGDVAMEQHFFVQDTTS--YPLILGQPYTMATRMETK-- 620

Query: 353 WSTGLIQMKDAKGKSIILRHEDWKAA----QHDLGGFRRRV 243
+ D +R EDW+ A D GG + V
Sbjct: 621 -------VLDDGSAYARVRSEDWRKAVQFSTRDYGGTKEEV 654


>tr|A9RIU4|A9RIU4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66703 PE=4 SV=1
Length = 814

Score = 37.0 bits (84), Expect = 0.73
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMAM 369
++ ANN + G VKVK N +E FV YP+ILG+P++ AM
Sbjct: 464 IRAANNTQGDLYGACPNVKVKVGNVTIEQKFFVQDTTS--YPVILGQPYITAM 514


>tr|A9TY16|A9TY16_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_98789 PE=4 SV=1
Length = 455

Score = 36.6 bits (83), Expect = 0.95
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3

Query: 527 VKMANNVRVKCVGIVNAVKVKAFNTEVEVDIFVMPHKGDGYPIILGRPWLMA--MEAK 360
++ ANN R K G VK++ + E FV YP+ILG+P++MA ME K
Sbjct: 344 IRAANNTRGKLYGACPDVKIRIGDVATEQHFFVQDTTS--YPLILGQPYIMATRMETK 399