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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913571
Clone id YMU001_000031_G03
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATTCTAAAACCAATGATGATTAGAAATGTTGAATGACGCACAATAAACTGCTAAACGCA
ACAAGGGAAGAGAATGCAGCGTATACTACCCTTTCGCCATAGGATTCCGCTGGAACAAGA
TGACAATCCCCATTCAATTTGAATGCACAACACATTCGAGTGTAAGATTCCTAAATTGCA
CGGTACAGTTTCAGAAGCTAATGCCAATTCCTTTTGAATGCAGAACGCATTCAAGTGTAA
GATTCCTATATTGCACAGTACAGTTTCAGAAGCTAATGCCGTTTCTCTAATATCACATCC
TCTAAGTTGAGCTTTGTAAGGACATTGCAATAGGCAGGCCAATCTCGACGCCTAAGGTAG
CGGAGCATGCGCTTTCGATATTGAACCATGTCACTTAGACCTTTCCTTGAATGTTTATCC
CTTTTATAATTTGGGCCTTCCCGCATATGCCGATTAAGGTTATTGATCC
■■Homology search results ■■ -
sp_hit_id O66594
Definition sp|O66594|RS15_AQUAE 30S ribosomal protein S15 OS=Aquifex aeolicus
Align length 56
Score (bit) 37.7
E-value 0.025
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913571|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G03.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O66594|RS15_AQUAE 30S ribosomal protein S15 OS=Aquifex aeolic...    38   0.025
sp|B1ZS99|RS15_OPITP 30S ribosomal protein S15 OS=Opitutus terra...    37   0.043
sp|P21473|RS15_BACSU 30S ribosomal protein S15 OS=Bacillus subti...    37   0.056
sp|A8FDD6|RS15_BACP2 30S ribosomal protein S15 OS=Bacillus pumil...    37   0.056
sp|Q65JH6|RS15_BACLD 30S ribosomal protein S15 OS=Bacillus liche...    37   0.056
sp|A7Z4T9|RS15_BACA2 30S ribosomal protein S15 OS=Bacillus amylo...    37   0.056
sp|Q6HF07|RS15_BACHK 30S ribosomal protein S15 OS=Bacillus thuri...    36   0.073
sp|Q636L8|RS15_BACCZ 30S ribosomal protein S15 OS=Bacillus cereu...    36   0.073
sp|Q819Z0|RS15_BACCR 30S ribosomal protein S15 OS=Bacillus cereu...    36   0.073
sp|A7GRD8|RS15_BACCN 30S ribosomal protein S15 OS=Bacillus cereu...    36   0.073
sp|Q732R4|RS15_BACC1 30S ribosomal protein S15 OS=Bacillus cereu...    36   0.073
sp|Q81WM7|RS15_BACAN 30S ribosomal protein S15 OS=Bacillus anthr...    36   0.073
sp|A0RHH9|RS15_BACAH 30S ribosomal protein S15 OS=Bacillus thuri...    36   0.073
sp|P05766|RS15_BACST 30S ribosomal protein S15 OS=Bacillus stear...    36   0.095
sp|Q9KA82|RS15_BACHD 30S ribosomal protein S15 OS=Bacillus halod...    36   0.095
sp|A4IME2|RS15_GEOTN 30S ribosomal protein S15 OS=Geobacillus th...    35   0.12 
sp|Q5L0I3|RS15_GEOKA 30S ribosomal protein S15 OS=Geobacillus ka...    35   0.16 
sp|Q5WFU7|RS15_BACSK 30S ribosomal protein S15 OS=Bacillus claus...    35   0.16 
sp|Q1MN43|RS15_RHIL3 30S ribosomal protein S15 OS=Rhizobium legu...    34   0.36 
sp|A8MFB3|RS15_ALKOO 30S ribosomal protein S15 OS=Alkaliphilus o...    34   0.36 
sp|Q50EJ9|RS15_LACRE 30S ribosomal protein S15 OS=Lactobacillus ...    33   0.47 
sp|A5VJ89|RS15_LACRD 30S ribosomal protein S15 OS=Lactobacillus ...    33   0.47 
sp|A0Q0Q2|RS15_CLONN 30S ribosomal protein S15 OS=Clostridium no...    33   0.47 
sp|Q67P80|RS15_SYMTH 30S ribosomal protein S15 OS=Symbiobacteriu...    32   1.1  
sp|Q4FNM7|RS15_PELUB 30S ribosomal protein S15 OS=Pelagibacter u...    32   1.1  
sp|Q18BI0|RS15_CLOD6 30S ribosomal protein S15 OS=Clostridium di...    32   1.1  
sp|B1KWK2|RS15_CLOBM 30S ribosomal protein S15 OS=Clostridium bo...    32   1.1  
sp|A7GG01|RS15_CLOBL 30S ribosomal protein S15 OS=Clostridium bo...    32   1.1  
sp|B1II44|RS15_CLOBK 30S ribosomal protein S15 OS=Clostridium bo...    32   1.1  
sp|A5I4I8|RS15_CLOBH 30S ribosomal protein S15 OS=Clostridium bo...    32   1.1  

>sp|O66594|RS15_AQUAE 30S ribosomal protein S15 OS=Aquifex aeolicus
           GN=rpsO PE=3 SV=1
          Length = 90

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLE 300
           IN L  HM++   +K+D HSR+GL  MV             D+  Y  V+ KLNL+
Sbjct: 36  INRLTEHMKK---HKKDIHSRRGLIAMVNKRRKLLEYLRETDYAKYLEVVQKLNLK 88


>sp|B1ZS99|RS15_OPITP 30S ribosomal protein S15 OS=Opitutus terrae
           (strain DSM 11246 / PB90-1) GN=rpsO PE=3 SV=1
          Length = 88

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           IN+L  H+R    +++D HSR+GL  M              D P Y  +L KLNL
Sbjct: 35  INHLTEHLR---THRKDFHSRRGLLQMASRRRKLLDYLKKHDLPKYTELLQKLNL 86


>sp|P21473|RS15_BACSU 30S ribosomal protein S15 OS=Bacillus subtilis
           GN=rpsO PE=1 SV=4
          Length = 89

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           INNLN H+R    +K+D HSR+GL  MV            +D   Y  ++ KL L
Sbjct: 36  INNLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGL 87


>sp|A8FDD6|RS15_BACP2 30S ribosomal protein S15 OS=Bacillus pumilus
           (strain SAFR-032) GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           INNLN H+R    +K+D HSR+GL  MV            +D   Y  ++ KL L
Sbjct: 36  INNLNEHLR---THKKDHHSRRGLLKMVGRRRNLLTYLRNKDVTRYRELINKLGL 87


>sp|Q65JH6|RS15_BACLD 30S ribosomal protein S15 OS=Bacillus
           licheniformis (strain DSM 13 / ATCC 14580) GN=rpsO PE=3
           SV=1
          Length = 89

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           INNLN H+R    +K+D HSR+GL  MV            +D   Y  ++ KL L
Sbjct: 36  INNLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGL 87


>sp|A7Z4T9|RS15_BACA2 30S ribosomal protein S15 OS=Bacillus
           amyloliquefaciens (strain FZB42) GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           INNLN H+R    +K+D HSR+GL  MV            +D   Y  ++ KL L
Sbjct: 36  INNLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGL 87


>sp|Q6HF07|RS15_BACHK 30S ribosomal protein S15 OS=Bacillus
           thuringiensis subsp. konkukian GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           IN LN H+R    +K+D HSR+GL  MV             D   Y  ++TKL L
Sbjct: 36  INTLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNSDITRYRELITKLGL 87


>sp|Q636L8|RS15_BACCZ 30S ribosomal protein S15 OS=Bacillus cereus
           (strain ZK / E33L) GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           IN LN H+R    +K+D HSR+GL  MV             D   Y  ++TKL L
Sbjct: 36  INTLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNSDITRYRELITKLGL 87


>sp|Q819Z0|RS15_BACCR 30S ribosomal protein S15 OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           IN LN H+R    +K+D HSR+GL  MV             D   Y  ++TKL L
Sbjct: 36  INTLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNSDITRYRELITKLGL 87


>sp|A7GRD8|RS15_BACCN 30S ribosomal protein S15 OS=Bacillus cereus
           subsp. cytotoxis (strain NVH 391-98) GN=rpsO PE=3 SV=1
          Length = 89

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 467 INNLNRHMREGPNYKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNL 303
           IN LN H+R    +K+D HSR+GL  MV             D   Y  ++TKL L
Sbjct: 36  INTLNEHLR---THKKDHHSRRGLLKMVGKRRNLLTYLRNSDITRYRELITKLGL 87
tr_hit_id Q69SJ7
Definition tr|Q69SJ7|Q69SJ7_ORYSJ Os02g0803200 protein OS=Oryza sativa subsp. japonica
Align length 45
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913571|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G03.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q69SJ7|Q69SJ7_ORYSJ Os02g0803200 protein OS=Oryza sativa subs...    52   2e-05
tr|B8AEE3|B8AEE3_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q658E3|Q658E3_ORYSJ Ribosomal protein S15-like OS=Oryza sativ...    50   6e-05
tr|B8B3G6|B8B3G6_ORYSI Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|B6TK08|B6TK08_MAIZE Ribosomal protein S15 containing protein ...    50   6e-05
tr|B4FT78|B4FT78_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B4FSG7|B4FSG7_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|A3B8X7|A3B8X7_ORYSJ Putative uncharacterized protein OS=Oryza...    50   6e-05
tr|A3ACE1|A3ACE1_ORYSJ Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9LMQ3|Q9LMQ3_ARATH F7H2.15 protein (At1g15810/F7H2_23) OS=Ar...    47   5e-04
tr|A7QJT2|A7QJT2_VITVI Chromosome undetermined scaffold_108, who...    47   5e-04
tr|A5ASE2|A5ASE2_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A5APL3|A5APL3_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis...    44   0.003
tr|Q9M8M9|Q9M8M9_ARATH Putative uncharacterized protein T21F11.5...    44   0.004
tr|A7QJS7|A7QJS7_VITVI Chromosome undetermined scaffold_108, who...    44   0.004
tr|A9TLD1|A9TLD1_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|Q2B0B0|Q2B0B0_9BACI 30S ribosomal protein S15 OS=Bacillus sp....    38   0.29 
tr|A9VT45|A9VT45_BACWK Ribosomal protein S15 OS=Bacillus weihens...    36   0.85 
tr|Q4MKB2|Q4MKB2_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|Q3EK21|Q3EK21_BACTI SSU ribosomal protein S15P OS=Bacillus th...    36   0.85 
tr|B7JJ85|B7JJ85_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B7IUG6|B7IUG6_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B7HLE1|B7HLE1_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B7HDT1|B7HDT1_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B5VCH5|B5VCH5_BACCE 30S ribosomal protein S15 OS=Bacillus cer...    36   0.85 
tr|B5UX42|B5UX42_BACCE 30S ribosomal protein S15 OS=Bacillus cer...    36   0.85 
tr|B3ZMW8|B3ZMW8_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B3ZGB1|B3ZGB1_BACCE Ribosomal protein S15 OS=Bacillus cereus ...    36   0.85 
tr|B1UR18|B1UR18_BACAN Ribosomal protein S15 OS=Bacillus anthrac...    36   0.85 

>tr|Q69SJ7|Q69SJ7_ORYSJ Os02g0803200 protein OS=Oryza sativa subsp.
           japonica GN=P0689B12.23 PE=2 SV=1
          Length = 447

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL DMVQ            DW +YC VL+KL L DV
Sbjct: 373 HKKDKHSRKGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 417


>tr|B8AEE3|B8AEE3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09325 PE=4 SV=1
          Length = 447

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL DMVQ            DW +YC VL+KL L DV
Sbjct: 373 HKKDKHSRKGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 417


>tr|Q658E3|Q658E3_ORYSJ Ribosomal protein S15-like OS=Oryza sativa
           subsp. japonica GN=P0015E04.36 PE=4 SV=1
          Length = 431

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 357 HKKDKHSRKGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 401


>tr|B8B3G6|B8B3G6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21884 PE=4 SV=1
          Length = 439

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 365 HKKDKHSRKGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 409


>tr|B6TK08|B6TK08_MAIZE Ribosomal protein S15 containing protein
           OS=Zea mays PE=2 SV=1
          Length = 326

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 249 HKKDKHSRKGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 293


>tr|B4FT78|B4FT78_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 432

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 356 HKKDKHSRKGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 400


>tr|B4FSG7|B4FSG7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 436

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 362 HKKDKHSRKGLQEMVQKRKKYMKYLRRTDWDSYCFVLSKLGLRDV 406


>tr|A3B8X7|A3B8X7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019499 PE=4 SV=1
          Length = 466

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/45 (51%), Positives = 28/45 (62%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           +K+DKHSRKGL +MVQ            DW +YC VL+KL L DV
Sbjct: 392 HKKDKHSRKGLQEMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 436


>tr|A3ACE1|A3ACE1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008463 PE=4 SV=1
          Length = 349

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/42 (54%), Positives = 25/42 (59%)
 Frame = -3

Query: 419 DKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLEDV 294
           DKHSRKGL DMVQ            DW +YC VL+KL L DV
Sbjct: 278 DKHSRKGLQDMVQRRKKYLKYLRRTDWDSYCLVLSKLGLRDV 319


>tr|Q9LMQ3|Q9LMQ3_ARATH F7H2.15 protein (At1g15810/F7H2_23)
           OS=Arabidopsis thaliana GN=At1g15810 PE=2 SV=1
          Length = 419

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = -3

Query: 428 YKRDKHSRKGLSDMVQXXXXXXXXXXXRDWPAYCNVLTKLNLED 297
           +K+DKHSRKGL  MVQ            DW +YC VL+KL+L D
Sbjct: 370 HKKDKHSRKGLLGMVQKRKKLLKYLRRTDWDSYCLVLSKLSLRD 413