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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913579
Clone id YMU001_000031_G11
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGTGGAAGCAGGTTGATTGAGATATCAAGTGGCTAGTGGTTGAGAATGCTTGTGTACAAG
GAAGAATAGCATGTGATAAGGATGTGGTTGAGCATGCAGTTATAAAAGAAGCTAATCCTT
TAGCACCAAAAAAGTAAGAGAAAAGAGATATGTCTCTATATCCTTGTATGAGGTCACGTC
AACTAGTGAAACCCAAGACCCAATTGCAACAGGCATGTCAGAGAAGAGAATACAAGATCA
AGAAGTGAATGCAATACTTAAGGAAGTTATTCATTCTCTTACTGAAAAGTAGGCTGAACA
TAGTAAGTTAGAAGGGCCCTCACTTGAGCTTGATGATTGAGGAAACTCAAATGTAAGACG
TCTTTGTTGAAGACACGCAAGGGCGGAATCTCGATCTCCTTAGCCATCTTGTGGGCTTAA
AGTACTAGTCCAATCCACAAGAAGAAGTGACTTATCCTTCTGTCTATGAAGTTCATAAAT
GTATGGGTTATTAGCTCCCTGTAAAAGTTGGGTGTGTGTAGTCCCTTGGTACTCATGAT
■■Homology search results ■■ -
sp_hit_id Q9ZM34
Definition sp|Q9ZM34|FLHF_HELPJ Flagellar biosynthesis protein flhF OS=Helicobacter pylori J99
Align length 68
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913579|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G11.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZM34|FLHF_HELPJ Flagellar biosynthesis protein flhF OS=Heli...    33   1.2  
sp|P21178|CEA1_SHISO Colicin-E1* OS=Shigella sonnei GN=cea PE=3 ...    30   9.8  

>sp|Q9ZM34|FLHF_HELPJ Flagellar biosynthesis protein flhF
           OS=Helicobacter pylori J99 GN=flhF PE=3 SV=1
          Length = 455

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 119 FSTKKVREKRYVSISLYEVTSTSETQDPIATGMSEKRIQDQEVNAILKEVIHSLTEK*AE 298
           F T+++R+K   S  LYE+    E ++     +  + + D+E+N   ++V+  L+    E
Sbjct: 29  FKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPLIPESLYDEELNE--EDVVMQLSSTVEE 86

Query: 299 HSKLEGPS 322
             KL G S
Sbjct: 87  MRKLAGVS 94


>sp|P21178|CEA1_SHISO Colicin-E1* OS=Shigella sonnei GN=cea PE=3
           SV=2
          Length = 521

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 140 EKRYVSISLYEVTSTSETQDPIATGMSEKRIQDQEVNAILKEVIHSLTEK*AEHSKLEGP 319
           EKR  ++S  E  +    Q  +A   SE    D+E+N +   +  S+  + AE + L G 
Sbjct: 177 EKRLAALS-EEARAVEVAQKNLAAAQSELAKVDEEINTLNTRLSSSIHARDAETNTLSGK 235

Query: 320 SLELD 334
             ELD
Sbjct: 236 RNELD 240
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913579|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G11.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******