BP913580
Clone id YMU001_000031_G12
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACTGGAGTCTTTTTGATAAATATGTTGAATCATGATAATTCATGAGTTTTGTAGTCATC
AGGAGCTCAAGGAAGCAGAATGTGTTCGCATGTCTGTGTCTGTTTACTAAATGTATCAAG
ATTATAAGGTTCTACATTATGGTCTGCCATTGGTGTGCAGCTACATCATGACTTATGATA
TTTGTAAAGTTTGTCAAGCTACTCAAAGCTAGCATTCAAACTGTATTTTCTATTATGCCG
ACTTCGAAAGGTCCAAAAATAGTGGCCTTAATGGCATCAATATTCTCAGTTCAGGGCTAT
GGGAGGTGATGCATGGCATCTTGGTGGGGAGAAAAGGTCCACTTTGTCTTCTCTACACTG
GAGTAAAGCTGTTGATACAATTCAGATGAAGGGTTCTAAGCCACTTACACAATCAGGGCT
TGTATATAGATTTCTATGACAAATGAGATGGTGTGCAATTTCAATATTTATTTCAGGCCT
CGTGATTTTAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P0C6V1
Definition sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM)
Align length 42
Score (bit) 32.7
E-value 0.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913580|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G12.
(489 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir... 33 0.90
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir... 33 0.90
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronaviru... 33 0.90
sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus gen... 31 2.6
sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus gen... 31 3.4
sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain... 31 3.4
sp|O92529|POLG_HCVT5 Genome polyprotein OS=Hepatitis C virus gen... 30 4.5
sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog O... 30 4.5
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronaviru... 30 5.8
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav... 30 5.8
sp|O92530|POLG_HCVVN Genome polyprotein OS=Hepatitis C virus gen... 30 5.8
sp|Q68798|POLG_HCVJL Genome polyprotein OS=Hepatitis C virus gen... 30 5.8
sp|Q5I2N3|POLG_HCV6A Genome polyprotein OS=Hepatitis C virus gen... 30 5.8
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronaviru... 30 7.6
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronaviru... 30 7.6
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavir... 30 7.6
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavir... 30 7.6
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronav... 30 7.6
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavi... 30 7.6
sp|Q9W594|GR02A_DROME Putative gustatory receptor 2a OS=Drosophi... 29 9.9

>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
(strain JHM) GN=1a PE=1 SV=1
Length = 4474

Score = 32.7 bits (73), Expect = 0.90
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4431 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4472


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
(strain A59) GN=1a PE=1 SV=1
Length = 4468

Score = 32.7 bits (73), Expect = 0.90
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4466


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
(strain 2) GN=1a PE=3 SV=1
Length = 4416

Score = 32.7 bits (73), Expect = 0.90
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>sp|O39927|POLG_HCVEU Genome polyprotein OS=Hepatitis C virus genotype
6a (isolate EUHK2) PE=3 SV=3
Length = 3018

Score = 31.2 bits (69), Expect = 2.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3

Query: 261 SGLNGINILSSGLWEVMHG----ILVGRKGPLCLLYTGVKL 371
+ +NG+ +W V HG L G KGP+C +YT V L
Sbjct: 1076 TSINGV------MWTVYHGPGFKTLAGPKGPVCQMYTNVDL 1110


>sp|O92531|POLG_HCVVO Genome polyprotein OS=Hepatitis C virus genotype
6k (isolate VN405) PE=3 SV=3
Length = 3016

Score = 30.8 bits (68), Expect = 3.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +3

Query: 297 LWEVMHGI----LVGRKGPLCLLYTGV 365
LW V HG L G KGP+C +YT V
Sbjct: 1080 LWTVYHGAGSKTLAGPKGPICQMYTNV 1106


>sp|Q2GK24|ENO_ANAPZ Enolase OS=Anaplasma phagocytophilum (strain
HZ) GN=eno PE=3 SV=1
Length = 429

Score = 30.8 bits (68), Expect = 3.4
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2

Query: 266 ATIFGPFEVGIIENTV*MLALSSLTNFTNIISH 168
A + P ++G + T+ + L+S++NF +I+SH
Sbjct: 337 AVLIKPNQIGTLSETIEAIRLASMSNFNSIVSH 369


>sp|O92529|POLG_HCVT5 Genome polyprotein OS=Hepatitis C virus genotype
6b (isolate Th580) PE=3 SV=3
Length = 3019

Score = 30.4 bits (67), Expect = 4.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Frame = +3

Query: 297 LWEVMHGI----LVGRKGPLCLLYTGV 365
LW V HG L G KGP+C +YT V
Sbjct: 1083 LWTVYHGAGSKNLAGPKGPVCQMYTNV 1109


>sp|Q6NRB9|K0090_XENLA Uncharacterized protein KIAA0090 homolog
OS=Xenopus laevis PE=2 SV=1
Length = 987

Score = 30.4 bits (67), Expect = 4.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3

Query: 189 VCQATQS*HSNCIFYYADFERSKNSGLN-GINILSSGLWEVM 311
V Q Q HS FY D E+ K SGL ++ + +WEV+
Sbjct: 652 VLQQLQELHSTIFFYLVDVEKGKLSGLRLNKDLSTEEIWEVL 693


>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
OC43 GN=1a PE=3 SV=1
Length = 4383

Score = 30.0 bits (66), Expect = 5.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + + LNG +
Sbjct: 4340 SYVLTHDVCRVCGFWRDGSCSCVSTDTTVQSKDTNFLNGFGV 4381


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) GN=rep PE=1 SV=1
Length = 7176

Score = 30.0 bits (66), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGI 278
SY++T+D+C+VC + +C+ + F+ + LN I
Sbjct: 4425 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNRI 4464


tr_hit_id Q5CQ19
Definition tr|Q5CQ19|Q5CQ19_CRYPV Putative uncharacterized protein OS=Cryptosporidium parvum Iowa II
Align length 47
Score (bit) 33.1
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913580|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_G12.
(489 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5CQ19|Q5CQ19_CRYPV Putative uncharacterized protein OS=Crypt... 33 7.1
tr|Q9J3F8|Q9J3F8_9CORO RNA-directed RNA polymerase OS=Murine hep... 33 9.3
tr|Q9J3F3|Q9J3F3_9CORO RNA-directed RNA polymerase OS=Murine hep... 33 9.3
tr|Q9J3E9|Q9J3E9_9CORO RNA-directed RNA polymerase OS=Murine hep... 33 9.3
tr|Q66WN5|Q66WN5_9CORO Replicative polyprotein 1a OS=Murine hepa... 33 9.3

>tr|Q5CQ19|Q5CQ19_CRYPV Putative uncharacterized protein
OS=Cryptosporidium parvum Iowa II GN=cgd5_4460 PE=4 SV=1
Length = 340

Score = 33.1 bits (74), Expect = 7.1
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -1

Query: 237 HNRKYSLNASFE*LDKLYKYHKS*CSCTPMADHNVEPYNLDTFSKQT 97
HN KYSL+ F+ L K+++Y K + M H ++ +N TFS T
Sbjct: 286 HNNKYSLSIEFQKLPKIFQYIKK--ETSKMTIHKLQFFNNLTFSDCT 330


>tr|Q9J3F8|Q9J3F8_9CORO RNA-directed RNA polymerase OS=Murine
hepatitis virus strain ML-11 GN=orf1A PE=4 SV=1
Length = 4416

Score = 32.7 bits (73), Expect = 9.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>tr|Q9J3F3|Q9J3F3_9CORO RNA-directed RNA polymerase OS=Murine
hepatitis virus GN=ORF1A PE=4 SV=1
Length = 4416

Score = 32.7 bits (73), Expect = 9.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4373 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4414


>tr|Q9J3E9|Q9J3E9_9CORO RNA-directed RNA polymerase OS=Murine
hepatitis virus GN=ORF1A PE=4 SV=1
Length = 4467

Score = 32.7 bits (73), Expect = 9.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4424 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4465


>tr|Q66WN5|Q66WN5_9CORO Replicative polyprotein 1a OS=Murine hepatitis
virus PE=4 SV=1
Length = 4470

Score = 32.7 bits (73), Expect = 9.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3

Query: 159 SYIMTYDICKVCQATQS*HSNCIFYYADFERSKNSGLNGINI 284
SY++T+D+C+VC + +C+ + F+ + LNG +
Sbjct: 4427 SYVLTHDVCQVCGFWRDGSCSCVGTGSQFQSKDTNFLNGFGV 4468