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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913586
Clone id YMU001_000031_H06
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGTGAACCTTCAGCCCGCGACACCTCTCATTCCCATGTCGCCTCGCACACGTACGCTTT
CATTTTCAGTCGTCCAGAACTCCGACAGACCTTCCATGGAGGAAACTCACAGGCATCCAT
GAACCCGTGAAACGCAGTTTGGCCAAGGTCAGAAGAATCTCGATGTCTATATGTGAGTGT
TTAAGCTGTGTGAGAGTGACTAGCTGTGATGTGCTTGCATCTAGGACCCACATTCCTTTG
AATGTTTGAGACATCTTGCAGGGTACGGAATCGCATGTTTCGGTAATCAAATAGAATGTT
GCACCTTTGGTGACTTTAGTATGCACAGAAGCTGAAACATCATTGACAGCCTACCCAACA
GAACCTATGGAATTGGATCATCCAATTCGCTGTCCTCAACCTGAGCCTGGAGTTATCCAT
GATGGAGACTTTTTCCGGAAAAAGATCCAAATATCCACGAAGAAAACAAGAGAAATATCA
TTTTTGACAGAAAAGGAAGTCCGCTTCCTTCAAAGCCGGCAACGGCTTTCAGATAATTGG
CCTATTTTTCCATGTGCGAGTGC
■■Homology search results ■■ -
sp_hit_id Q9P6Y2
Definition sp|Q9P6Y2|SEN2_NEUCR Probable tRNA-splicing endonuclease subunit sen-2 OS=Neurospora crassa
Align length 73
Score (bit) 30.4
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913586|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H06.
         (563 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P6Y2|SEN2_NEUCR Probable tRNA-splicing endonuclease subunit...    30   6.3  

>sp|Q9P6Y2|SEN2_NEUCR Probable tRNA-splicing endonuclease subunit
           sen-2 OS=Neurospora crassa GN=sen-2 PE=3 SV=1
          Length = 633

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = +1

Query: 346 TAYPTEPMELDH-------PIRCPQP-EPGVIHDGDFFRKKIQISTKKTREISFLTEKEV 501
           T YP+ P+ L H        +  P P EP VIH+G +      +  K  + I  L E+  
Sbjct: 61  TFYPSNPLSLFHLAVAWLRQVLLPPPAEPSVIHEGIWDPDTRSVHVKDPKSIRALWEQGF 120

Query: 502 RFLQSRQRLSDNW 540
               S  R   NW
Sbjct: 121 YGKGSLSRSEPNW 133
tr_hit_id A7PBY6
Definition tr|A7PBY6|A7PBY6_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera
Align length 55
Score (bit) 53.1
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913586|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H06.
         (563 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PBY6|A7PBY6_VITVI Chromosome chr2 scaffold_11, whole genome...    53   1e-05
tr|A5BYJ6|A5BYJ6_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|A9NWK8|A9NWK8_PICSI Putative uncharacterized protein OS=Picea...    52   3e-05
tr|A9RGQ7|A9RGQ7_PHYPA Predicted protein OS=Physcomitrella paten...    50   8e-05
tr|A9T0F8|A9T0F8_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|B6UEH4|B6UEH4_MAIZE Putative uncharacterized protein OS=Zea m...    48   3e-04
tr|B6TJW1|B6TJW1_MAIZE Putative uncharacterized protein OS=Zea m...    48   3e-04
tr|Q6Z8F6|Q6Z8F6_ORYSJ Os02g0697700 protein OS=Oryza sativa subs...    47   7e-04
tr|A2X8L1|A2X8L1_ORYSI Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|Q8S8M7|Q8S8M7_ARATH Expressed protein (At2g35585) (Putative u...    45   0.002
tr|Q9C506|Q9C506_ARATH Putative uncharacterized protein T12O21.1...    45   0.003
tr|Q8VYV3|Q8VYV3_ARATH At1g31940/F5M6.6 (Putative uncharacterize...    45   0.003
tr|A9XNS9|A9XNS9_9MYRT Putative uncharacterized protein (Fragmen...    44   0.005
tr|A9XNS8|A9XNS8_9MYRT Putative uncharacterized protein (Fragmen...    44   0.005
tr|A9XNT1|A9XNT1_9MYRT Putative uncharacterized protein (Fragmen...    44   0.008
tr|A9XNT0|A9XNT0_9MYRT Putative uncharacterized protein (Fragmen...    44   0.008
tr|A9T6A4|A9T6A4_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.19 
tr|A5C1H9|A5C1H9_VITVI Putative uncharacterized protein OS=Vitis...    39   0.25 
tr|A9TUQ3|A9TUQ3_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.33 
tr|A9TEI0|A9TEI0_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.8  
tr|B3PG94|B3PG94_CELJU Phosphate regulon sensor protein PhoR OS=...    33   8.2  
tr|A9P9W6|A9P9W6_POPTR Putative uncharacterized protein OS=Popul...    33   8.2  
tr|Q6FUJ2|Q6FUJ2_CANGA Strain CBS138 chromosome F complete seque...    33   8.2  

>tr|A7PBY6|A7PBY6_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015630001
           PE=4 SV=1
          Length = 154

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 39/55 (70%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTREISFLTEKEVRFLQS 516
           +PTEP++ D P++CP PEP +++DG  +++++  S ++  ++S +  KE  FL+S
Sbjct: 63  HPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVM--KEGNFLES 115


>tr|A5BYJ6|A5BYJ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022546 PE=4 SV=1
          Length = 154

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 20/55 (36%), Positives = 39/55 (70%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTREISFLTEKEVRFLQS 516
           +PTEP++ D P++CP PEP +++DG  +++++  S ++  ++S +  KE  FL+S
Sbjct: 63  HPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVM--KEGNFLES 115


>tr|A9NWK8|A9NWK8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 145

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 31/47 (65%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTREISFLTE 492
           +P EP + D P+RCP PEP ++HDG  ++++++ S ++  E   + E
Sbjct: 54  HPLEPPDKDQPVRCPPPEPSILHDGTIWKERLEASARRRAEFPIIRE 100


>tr|A9RGQ7|A9RGQ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_158985 PE=4 SV=1
          Length = 451

 Score = 50.1 bits (118), Expect = 8e-05
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 355 PTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTREI 477
           P EP E+D P+RCPQPEP ++ DG  +R +I  S ++  +I
Sbjct: 340 PEEPSEIDQPVRCPQPEPNIMEDGILWRARIVASLRRRNDI 380


>tr|A9T0F8|A9T0F8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167448 PE=4 SV=1
          Length = 251

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +1

Query: 334 ETSLTAYPTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTREISFLTEKE 498
           E +    P EP +LD P+RCP PEP ++HDG  F+ ++  S +++  +  + E +
Sbjct: 159 EFTFVPRPMEPTDLDKPVRCPPPEPCIVHDGIVFKDRLANSRRRSDLLGSMRETD 213


>tr|B6UEH4|B6UEH4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +1

Query: 355 PTEPMELDHPIRCPQPEPGVIHDGDFFRKKI-QISTKKTREISFLTE 492
           P EP+ LD P++CP PEP ++HDG  +++K+  +ST+   ++  + E
Sbjct: 61  PVEPINLDEPVKCPLPEPSILHDGRIWKEKMSSVSTRVRTDLPVVKE 107


>tr|B6TJW1|B6TJW1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +1

Query: 355 PTEPMELDHPIRCPQPEPGVIHDGDFFRKKI-QISTKKTREISFLTE 492
           P EP+ LD P++CP PEP ++HDG  +++K+  +ST+   ++  + E
Sbjct: 61  PVEPINLDEPVKCPLPEPSILHDGRIWKEKMSSVSTRVRTDLPVVKE 107


>tr|Q6Z8F6|Q6Z8F6_ORYSJ Os02g0697700 protein OS=Oryza sativa subsp.
           japonica GN=P0459B01.8 PE=2 SV=1
          Length = 156

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKI 447
           +P EP+ LD P++CP PEP ++HDG  ++++I
Sbjct: 59  HPVEPVNLDQPVKCPLPEPSILHDGRIWKERI 90


>tr|A2X8L1|A2X8L1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08572 PE=4 SV=1
          Length = 156

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKI 447
           +P EP+ LD P++CP PEP ++HDG  ++++I
Sbjct: 59  HPVEPVNLDQPVKCPLPEPSILHDGRIWKERI 90


>tr|Q8S8M7|Q8S8M7_ARATH Expressed protein (At2g35585) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At2g35585 PE=2 SV=1
          Length = 156

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 15/40 (37%), Positives = 29/40 (72%)
 Frame = +1

Query: 352 YPTEPMELDHPIRCPQPEPGVIHDGDFFRKKIQISTKKTR 471
           +P EP++ D PI+CP PEP +++DG  +++++  S+ + R
Sbjct: 59  HPMEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRR 98