NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913587
Clone id YMU001_000031_H07
Library
Length 296
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCCGCGTTGCAGACTGTAAGTGGAGGGGAGCAGTCGGAAGGCGTGACAGGATTGAGTTG
GCTGGATAGGGCGAGGCTGGAGATATCACCGAAGCCCACCATAGAGCAGATTGCGGATGC
CATGCTGCTACTGCCACCAGCCCGCACGTCTAGTGCATCAGCGCAGCAGCAGCAGCAAAC
GAGTGCCCAAATTCCGCCCACCGTCTCCGACGAATTTGTGTATGACGACCCCCATCACGA
CTCTTCCTTGTGGAATTTTTTTTGACCACTAAGTTGGGTATCTGTCACCTGTTACG
■■Homology search results ■■ -
sp_hit_id Q2NUC6
Definition sp|Q2NUC6|DCD_SODGM Deoxycytidine triphosphate deaminase OS=Sodalis glossinidius (strain morsitans)
Align length 21
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913587|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H07.
         (296 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2NUC6|DCD_SODGM Deoxycytidine triphosphate deaminase OS=Soda...    30   2.9  
sp|Q5PQV5|TPBG_RAT Trophoblast glycoprotein OS=Rattus norvegicus...    30   5.0  
sp|Q9Z0L0|TPBG_MOUSE Trophoblast glycoprotein OS=Mus musculus GN...    30   5.0  
sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subs...    30   5.0  
sp|Q3Z0D8|DCD_SHISS Deoxycytidine triphosphate deaminase OS=Shig...    30   5.0  
sp|Q83QZ5|DCD_SHIFL Deoxycytidine triphosphate deaminase OS=Shig...    30   5.0  
sp|Q0T366|DCD_SHIF8 Deoxycytidine triphosphate deaminase OS=Shig...    30   5.0  
sp|Q32EH3|DCD_SHIDS Deoxycytidine triphosphate deaminase OS=Shig...    30   5.0  
sp|Q323E8|DCD_SHIBS Deoxycytidine triphosphate deaminase OS=Shig...    30   5.0  
sp|P63905|DCD_SALTY Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|P63906|DCD_SALTI Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|A9N7M1|DCD_SALPB Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|Q5PDX5|DCD_SALPA Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|Q57MN2|DCD_SALCH Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|A9MKX9|DCD_SALAR Deoxycytidine triphosphate deaminase OS=Salm...    30   5.0  
sp|Q1RA05|DCD_ECOUT Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|P28248|DCD_ECOLI Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|B1IZ09|DCD_ECOLC Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|P63901|DCD_ECOL6 Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|Q0TG25|DCD_ECOL5 Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|A1ACS1|DCD_ECOK1 Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|A8A1T7|DCD_ECOHS Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|P63902|DCD_ECO57 Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|A7ZNN9|DCD_ECO24 Deoxycytidine triphosphate deaminase OS=Esch...    30   5.0  
sp|A8AEF5|DCD_CITK8 Deoxycytidine triphosphate deaminase OS=Citr...    30   5.0  
sp|P40379|REC16_SCHPO Transcriptional activator protein rec16 OS...    29   6.5  
sp|A6TBG5|DCD_KLEP7 Deoxycytidine triphosphate deaminase OS=Kleb...    29   6.5  
sp|A7MHG9|DCD_ENTS8 Deoxycytidine triphosphate deaminase OS=Ente...    29   6.5  
sp|A4WCB5|DCD_ENT38 Deoxycytidine triphosphate deaminase OS=Ente...    29   6.5  

>sp|Q2NUC6|DCD_SODGM Deoxycytidine triphosphate deaminase OS=Sodalis
           glossinidius (strain morsitans) GN=dcd PE=3 SV=1
          Length = 193

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 59  WLDRARLEISPKPTIEQIADA 121
           WLD  RL+I+P+P IE+I  A
Sbjct: 11  WLDEGRLDIAPRPPIERINGA 31


>sp|Q5PQV5|TPBG_RAT Trophoblast glycoprotein OS=Rattus norvegicus
           GN=Tpbg PE=2 SV=1
          Length = 426

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 96  PP*SRLRMPCCYCHQPARLVHQRSSSSKRVPKFRPPSPTNLCMT-TPITTLPCGIF 260
           PP +      C C + AR V   + +   VP   PP   NL +T   +T LP G F
Sbjct: 56  PPPAERCPAACECSEAARTVKCVNRNLLEVPADLPPYVRNLFLTGNQMTVLPAGAF 111


>sp|Q9Z0L0|TPBG_MOUSE Trophoblast glycoprotein OS=Mus musculus
           GN=Tpbg PE=2 SV=2
          Length = 426

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 96  PP*SRLRMPCCYCHQPARLVHQRSSSSKRVPKFRPPSPTNLCMT-TPITTLPCGIF 260
           PP +      C C + AR V   + +   VP   PP   NL +T   +T LP G F
Sbjct: 56  PPPAERCPAACECSEAARTVKCVNRNLLEVPADLPPYVRNLFLTGNQMTVLPAGAF 111


>sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subsp.
           japonica GN=FH13 PE=2 SV=1
          Length = 774

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +3

Query: 66  IGRGWRYHRSPP*SRLRMPCCYCHQPARLV----HQRSSSSKRVPKFRPPSP 209
           +G   R HRSPP S       Y      LV    H++S   + +P  + PSP
Sbjct: 142 VGSSSRQHRSPPPSSTASDAIYLDPLTTLVEVRQHEKSPDLRPLPLLKQPSP 193


>sp|Q3Z0D8|DCD_SHISS Deoxycytidine triphosphate deaminase
           OS=Shigella sonnei (strain Ss046) GN=dcd PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSINPRPPVERINGA 31


>sp|Q83QZ5|DCD_SHIFL Deoxycytidine triphosphate deaminase
           OS=Shigella flexneri GN=dcd PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSINPRPPVERINGA 31


>sp|Q0T366|DCD_SHIF8 Deoxycytidine triphosphate deaminase
           OS=Shigella flexneri serotype 5b (strain 8401) GN=dcd
           PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSINPRPPVERINGA 31


>sp|Q32EH3|DCD_SHIDS Deoxycytidine triphosphate deaminase
           OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dcd
           PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSINPRPPVERINGA 31


>sp|Q323E8|DCD_SHIBS Deoxycytidine triphosphate deaminase
           OS=Shigella boydii serotype 4 (strain Sb227) GN=dcd PE=3
           SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSINPRPPVERINGA 31


>sp|P63905|DCD_SALTY Deoxycytidine triphosphate deaminase
           OS=Salmonella typhimurium GN=dcd PE=3 SV=1
          Length = 193

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SWLDRARLEISPKPTIEQIADA 121
           +WLD  RL I+P+P +E+I  A
Sbjct: 10  AWLDEGRLSITPRPPVERINGA 31
tr_hit_id A4JMQ6
Definition tr|A4JMQ6|A4JMQ6_BURVG Putative uncharacterized protein OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
Align length 57
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913587|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H07.
         (296 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4JMQ6|A4JMQ6_BURVG Putative uncharacterized protein OS=Burkh...    38   0.29 
tr|B5DJ80|B5DJ80_DROPS GA26108 OS=Drosophila pseudoobscura pseud...    33   5.4  
tr|B4UXH0|B4UXH0_9ACTO Putative uncharacterized protein OS=Strep...    33   7.0  
tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis GN=GJ17388 ...    33   7.0  

>tr|A4JMQ6|A4JMQ6_BURVG Putative uncharacterized protein
           OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
           GN=Bcep1808_4596 PE=4 SV=1
          Length = 117

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 69  GRGWR-YHRSPP*SRLRMPCCYCHQPARLVHQRSSSSKRVPKFRPPSPTNLCMTTPI 236
           GR +R +H +P  SR +  C +C   A   H R+ + K++P+ R  SP++ C+  PI
Sbjct: 63  GRFFRVFHTAPVYSRCQAVCAHC--AAFTAHVRTITRKKIPRVRCFSPSSFCLARPI 117


>tr|B5DJ80|B5DJ80_DROPS GA26108 OS=Drosophila pseudoobscura
             pseudoobscura GN=GA26108 PE=4 SV=1
          Length = 17011

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 70    GEAGDITEAHHRADCGCHAATATSPHV*CISXXXXXNE-CPN--SAHRLRRIC 219
             G        +H+A C C A T  SP V CI+     NE C +  +  RL R+C
Sbjct: 15410 GSGAQCLPQNHQAVCSCPAGTQGSPFVACITGHCQYNEDCADHEACDRLNRVC 15462


>tr|B4UXH0|B4UXH0_9ACTO Putative uncharacterized protein
           OS=Streptomyces sp. Mg1 GN=SSAG_00326 PE=4 SV=1
          Length = 109

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = -1

Query: 125 AWHPQSALWWASVISPASPYPANSI----LSRLPTAP 27
           AW P S LWW     P S  PAN I      RL  AP
Sbjct: 10  AWPPSSTLWWTGRTRPGSVLPANRIPLEATDRLGIAP 46


>tr|B4LUW4|B4LUW4_DROVI GJ17388 OS=Drosophila virilis GN=GJ17388 PE=4
             SV=1
          Length = 13499

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 70    GEAGDITEAHHRADCGCHAATATSPHV*CISXXXXXNE-CPN--SAHRLRRIC 219
             G   +    +H+A C C A T  SP + CI+     NE C +  +  RL R+C
Sbjct: 11902 GSGAECLPQNHQAVCRCPAGTQGSPFIACITGHCQYNEDCADNEACDRLNRVC 11954