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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913590
Clone id YMU001_000031_H10
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000031_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTGCCTCTGCCAAATCGTCACTCATTTGCGTAACAAGAAGTATCAACAAATTGAGCAGC
TCTTCGTCGTTTTTGTTTCTATTCAAATGCGCCAAGTTCTTTTCCTTCTCTAGAAGAGAC
GCTTCCTTTANTATCTCCTGGTTGGACTTCAAGCCAAGTTTGTCTGCAAGATGCACAAGC
ATTTCATGGCTCAACTTCGTTCCTTTCCTAATCTCTGCCAAGGCACACTCAACCTCTTCC
ACAAGACCCCTATCAACATCAGTACAAAAGTTGGCTGATTCAAGAGAACTGACACATCCT
CGCACTAGTTCCTTGGAATGCCGAGACAAACTAAGAGTATCCAGTGGCAAAGTCCTCAGA
AGTGATTGCAACTTTGCAGATAGTTCTTTGAAAACTTGTTGCTTGCGTAAAACCTCAGTT
ATCTCCCTTCTCCACAGGTGCCTTGTTCAAGTTTGTGGCATTGCAAGTGTTCTCTTGTGT
CAGAGATTCTTATCGGAATCGGGCCAGATCGGAGTCGAGGTGTCCACCGGATCG
■■Homology search results ■■ -
sp_hit_id O22193
Definition sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana
Align length 48
Score (bit) 40.4
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913590|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H10.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabid...    40   0.005
sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabid...    36   0.10 
sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabid...    32   2.5  
sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic ...    31   3.3  
sp|Q8BX80|ENASE_MOUSE Cytosolic endo-beta-N-acetylglucosaminidas...    31   4.3  
sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes ...    30   7.4  
sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens GN=...    30   7.4  
sp|Q59749|PARC_RHIME DNA topoisomerase 4 subunit A OS=Rhizobium ...    30   9.5  
sp|Q8BMI3|GGA3_MOUSE ADP-ribosylation factor-binding protein GGA...    30   9.5  

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4
           OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2
          Length = 811

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -2

Query: 233 VECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXKEASLLEKEKNLA 90
           ++ AL + R G   S E+LV + +  GL+SNQEI  EA  LE++K +A
Sbjct: 144 IDGALRDQRDGVGPSPEILVKIGENTGLRSNQEILIEAVALERQKEMA 191


>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2
           OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1
          Length = 707

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = -2

Query: 233 VECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXKEASLLEKEKNLAHXXXXXXXXXXX 54
           ++ AL + +KG   + E+LV +A+  GL+SNQEI  E  +L   K  A            
Sbjct: 153 IDQALKDQKKGVGPTSEVLVKIAESTGLRSNQEILVEGVVLTNMKEDAELTDNDTEAEYL 212

Query: 53  XXXXXLVTQMSDDLAE 6
                L TQM + L++
Sbjct: 213 DGLISLTTQMHEYLSD 228


>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3
           OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
          Length = 760

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -2

Query: 317 SKELVRGCVSSLESANFCTDVDRGLVEEVECALAEIRKG-TKLSHEMLVHLADKLGLKSN 141
           S + V  CV   ES       +  L+E +E AL   +   T L +  L  +   LGL SN
Sbjct: 126 SVQSVERCVQETESFK----QEGTLMELMENALRNQKDDITSLDNNHLESIIQMLGLISN 181

Query: 140 QEIXKEASLLEKEK 99
           Q++ KE+  +EKE+
Sbjct: 182 QDLLKESITVEKER 195


>sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic
           OS=Arabidopsis thaliana GN=ATPC1 PE=2 SV=1
          Length = 373

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 139 WLDFKPSLSARCTSISWLNFV--PFLISAKAHSTSSTRPLSTSVQKLAD 279
           W+  KPSLSA  +S+S+ + +  P   S+     SS  PL  S+++L D
Sbjct: 10  WVSSKPSLSADSSSLSFRSVLKCPTNTSSPPSRASSVSPLQASLRELRD 58


>sp|Q8BX80|ENASE_MOUSE Cytosolic endo-beta-N-acetylglucosaminidase
           OS=Mus musculus PE=2 SV=1
          Length = 734

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = +2

Query: 65  RRFCFYSN---APSSFPSLEETLPLX--------SPGWTSSQVCLQDAQAFHGSTSFL 205
           RR C+       P   PS +ET PL         S GW  +  CL D  A+HG +S L
Sbjct: 403 RRVCYGKEQAVGPWYHPSAQETQPLFGEHKLAGDSRGWVKTHCCLTD--AWHGGSSLL 458


>sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes
           GN=PCDHGC4 PE=3 SV=1
          Length = 938

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 235 SSTRPLSTSVQKLADSRELTHPRTSSLECRDKLRVSSGKVLRSDCNFADSSLKTCCLRKT 414
           S + PLSTSV  L    E THP    L  R+      G+  R     A S +  C +   
Sbjct: 650 SGSPPLSTSVTLLVSLEEDTHPVVPDL--RESSAPREGE-SRLTLYLAVSLVAICFVSFG 706

Query: 415 SVISLLHRCL-VQVCGI 462
           S ++LL +CL    CG+
Sbjct: 707 SFVALLSKCLRGAACGV 723


>sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens
           GN=PCDHGC4 PE=2 SV=1
          Length = 938

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 235 SSTRPLSTSVQKLADSRELTHPRTSSLECRDKLRVSSGKVLRSDCNFADSSLKTCCLRKT 414
           S + PLSTSV  L    E THP    L  R+      G+  R     A S +  C +   
Sbjct: 650 SGSPPLSTSVTLLVSLEEDTHPVVPDL--RESSAPREGE-SRLTLYLAVSLVAICFVSFG 706

Query: 415 SVISLLHRCL-VQVCGI 462
           S ++LL +CL    CG+
Sbjct: 707 SFVALLSKCLRGAACGV 723


>sp|Q59749|PARC_RHIME DNA topoisomerase 4 subunit A OS=Rhizobium
           meliloti GN=parC PE=3 SV=2
          Length = 758

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 224 ALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXKEASLL 111
           AL ++R G K  H  ++H   ++GL+ N    K A ++
Sbjct: 40  ALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIV 77


>sp|Q8BMI3|GGA3_MOUSE ADP-ribosylation factor-binding protein GGA3
           OS=Mus musculus GN=Gga3 PE=2 SV=1
          Length = 718

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 221 LAEIRKGTKLSHEMLVHLADKLGLKSNQEIXKE 123
           L E+    KL HEML+H + +    +++E+ KE
Sbjct: 218 LEEVNNNVKLLHEMLLHYSQEYSSDADKELMKE 250
tr_hit_id A9TSK8
Definition tr|A9TSK8|A9TSK8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913590|Adiantum capillus-veneris mRNA, clone:
YMU001_000031_H10.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TSK8|A9TSK8_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   1.1  
tr|Q11CJ3|Q11CJ3_MESSB Conserved hypothetical membrane-anchored ...    35   1.9  
tr|A7PLL3|A7PLL3_VITVI Chromosome chr7 scaffold_20, whole genome...    35   2.4  
tr|Q0TRY0|Q0TRY0_CLOP1 Putative sensory box-containing diguanyla...    34   4.1  
tr|B1V2C4|B1V2C4_CLOPE Sensory box/ggdef domain/hd domain protei...    34   4.1  
tr|B1RM76|B1RM76_CLOPE Putative sensory box-containing diguanyla...    34   4.1  
tr|B1RCH6|B1RCH6_CLOPE Putative sensory box-containing diguanyla...    34   4.1  
tr|B1BTP4|B1BTP4_CLOPE Putative sensory box-containing diguanyla...    34   4.1  
tr|B1BJA8|B1BJA8_CLOPE Putative sensory box-containing diguanyla...    34   4.1  
tr|Q0SU88|Q0SU88_CLOPS Sensory box/GGDEF domain/HD domain protei...    34   5.4  
tr|B1C312|B1C312_9FIRM Putative uncharacterized protein OS=Clost...    33   7.0  
tr|Q9XZH3|Q9XZH3_AMOPR Pepstatin-insensitive carboxyl proteinase...    33   7.0  

>tr|A9TSK8|A9TSK8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_149939 PE=4 SV=1
          Length = 563

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 239 EEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXKEASLLEKEKNLA 90
           E +E  L E R+G++   E L  +A+KL L+S + I +E   L KE+  A
Sbjct: 7   ENIETLLREQREGSRPRRETLERVAEKLHLRSKENIAQELQALTKEREEA 56


>tr|Q11CJ3|Q11CJ3_MESSB Conserved hypothetical membrane-anchored
           protein OS=Mesorhizobium sp. (strain BNC1) GN=Meso_3511
           PE=4 SV=1
          Length = 165

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +1

Query: 181 ISWLNFVPFLISAKAHSTSSTRPLSTSVQKLADSRELTHPRTSSLECRDKLRVS 342
           ++W+ F   LI A A  T S    ST+ Q L+   ++ HPR +  E  D+LRVS
Sbjct: 29  VAWVVFALILILALAGLTGSGGYFSTATQSLSTG-QVEHPRIARWEASDELRVS 81


>tr|A7PLL3|A7PLL3_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019617001
           PE=4 SV=1
          Length = 694

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = -2

Query: 206 KGTKLSHEMLVHLADKLGLKSNQEIXKEASLLEKEKNLAHXXXXXXXXXXXXXXXXLVTQ 27
           +G   S E L+ LAD L L+SNQE+  EA  LEK K  A                 L TQ
Sbjct: 158 QGAGSSSESLMKLADCLSLRSNQELLIEAVALEKLKENAEQAEKTEEAEYIDQMITLATQ 217

Query: 26  MSD 18
           M D
Sbjct: 218 MHD 220


>tr|Q0TRY0|Q0TRY0_CLOP1 Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens (strain ATCC 13124 /
           NCTC 8237 / Type A) GN=CPF_1164 PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|B1V2C4|B1V2C4_CLOPE Sensory box/ggdef domain/hd domain protein
           OS=Clostridium perfringens D str. JGS1721 GN=CJD_1272
           PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|B1RM76|B1RM76_CLOPE Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens NCTC 8239 GN=AC7_1155
           PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|B1RCH6|B1RCH6_CLOPE Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens CPE str. F4969
           GN=AC5_1187 PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|B1BTP4|B1BTP4_CLOPE Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens E str. JGS1987
           GN=AC3_1289 PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|B1BJA8|B1BJA8_CLOPE Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens C str. JGS1495
           GN=CPC_1163 PE=4 SV=1
          Length = 599

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKEAKK 393


>tr|Q0SU88|Q0SU88_CLOPS Sensory box/GGDEF domain/HD domain protein
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=CPR_0996 PE=4 SV=1
          Length = 599

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 269 FCTDVDRGLVEEVECALAEIRKGTKLSHEMLVHLADKLGLKSNQEIXK 126
           FC  + +   EE E     IRK  KL+H+ ++ L+  LG+ S +E  K
Sbjct: 346 FCILLPKTTEEEAEAICNRIRKNCKLNHKTIIPLSIALGVSSKKESKK 393