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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913601
Clone id YMU001_000032_A11
Library
Length 354
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTAACTCAATTCCGAGAGGCTCTTCTAAGAGCTTCTCCTGTTCATAGGCAGTGTCTGCAG
TAACCATGTTGCGAGGACGACGCTTTCCCGACAATGTTTCCGAACCATACAATCCCTCAT
CATCATGACTTAACCCATGTCCATGGAGTAAAACAGGCTTGTCAGCTTTGGACAGGTCAG
ACAATTTTGTGCGACTTTTTGCATCGAACCCTGACTCAAGATCATAGTTTGAGAATCCAG
TAGACCTCTTGCCTGTGGGCCTTATACTGTATTTTTCAGCTGCTAACCTATGAGGTATCT
CACTACTTGTTCGAGAAGGGCCACTCACAATAGCAGTCTGGCTTGGTTTTACAG
■■Homology search results ■■ -
sp_hit_id B1A925
Definition sp|B1A925|RPOC2_CARPA DNA-directed RNA polymerase subunit beta'' OS=Carica papaya
Align length 129
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913601|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_A11.
         (354 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B1A925|RPOC2_CARPA DNA-directed RNA polymerase subunit beta''...    31   1.7  
sp|Q6P9R4|ARHGI_MOUSE Rho guanine nucleotide exchange factor 18 ...    30   3.7  
sp|Q5YSV5|RS15_NOCFA 30S ribosomal protein S15 OS=Nocardia farci...    30   4.8  
sp|Q03016|GIP3_YEAST GLC7-interacting protein 3 OS=Saccharomyces...    30   4.8  
sp|O93967|PALY_AMAMU Phenylalanine ammonia-lyase OS=Amanita musc...    29   6.3  
sp|O57709|GCSPB_PYRHO Probable glycine dehydrogenase [decarboxyl...    29   8.2  

>sp|B1A925|RPOC2_CARPA DNA-directed RNA polymerase subunit beta''
           OS=Carica papaya GN=rpoC2 PE=3 SV=1
          Length = 1387

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
 Frame = -3

Query: 349 KPSQTAIVSGPSRTSSEIP------------HRLAAEKYSIRPTGKRSTGFSNYDLESGF 206
           K S   I+SG S  SS +P            H L+ E+ SI      +    +    S F
Sbjct: 470 KTSHLWILSGGSSRSSLVPFSLHKDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNF 529

Query: 205 DAKSRTKLSDLSKADKPVLLHGH-GLSHDDEGLYGSETLSGKRRPRNMVTADTAYEQEKL 29
             K +  + D S+  + +L  GH  L +       S+ L+ +RR R ++   +  EQEK 
Sbjct: 530 SDKKKCGIPDYSEFHR-ILDTGHCNLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKE 588

Query: 28  LEEPLGIEL 2
           L    GI +
Sbjct: 589 LMPRSGISI 597


>sp|Q6P9R4|ARHGI_MOUSE Rho guanine nucleotide exchange factor 18
            OS=Mus musculus GN=Arhgef18 PE=2 SV=1
          Length = 1021

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/85 (24%), Positives = 34/85 (40%)
 Frame = -3

Query: 343  SQTAIVSGPSRTSSEIPHRLAAEKYSIRPTGKRSTGFSNYDLESGFDAKSRTKLSDLSKA 164
            S T  +   +    +IP +LAA     +  G +S G   ++  + FD K +  LS     
Sbjct: 883  SATNQIQRQTAVQQQIPTKLAASTKGGKEKGSKSRGSQRWESSASFDLKQQLLLSKFIGK 942

Query: 163  DKPVLLHGHGLSHDDEGLYGSETLS 89
            D+    +   LS      +GS   S
Sbjct: 943  DESASRNRRSLSPVLPAAHGSAPAS 967


>sp|Q5YSV5|RS15_NOCFA 30S ribosomal protein S15 OS=Nocardia
           farcinica GN=rpsO PE=3 SV=1
          Length = 89

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -3

Query: 256 TGKRSTGFSNYDLESGFDAKSRTKLSDLSKADKPVLLHGHGLSHDDEGLYGSETLSGKRR 77
           T ++S   + Y L          +++ LSK    +  H     HD    +G   L G+R+
Sbjct: 5   TEQKSAILAEYGLHEKDTGSPEAQIALLSKRIADITEHLKKHKHDHHTRHGLMALIGRRK 64

Query: 76  PRNMVTADTAYEQEKLLEEPLGI 8
             +   AD   E+ + L E LG+
Sbjct: 65  RLSKYLADKDIERYRALIERLGL 87


>sp|Q03016|GIP3_YEAST GLC7-interacting protein 3 OS=Saccharomyces
           cerevisiae GN=GIP3 PE=1 SV=1
          Length = 1276

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = -3

Query: 313 RTSSEIPHRLAAEKYSIRPTGKRSTGFSNYDLESGFDAKSRTKLSDLSKA--DKPVLLHG 140
           +T+S+   +L  EK S     K+    S  ++E+  + ++     +LSKA  DKP+ +H 
Sbjct: 389 KTASDAGGKLT-EKSSEGTITKQREEVSPPNVEADRELENNKLAENLSKAGIDKPIHMHE 447

Query: 139 HGLSHDDEGLYGSETLSGKRRPRNMVTADTAYEQEKLLEEPLGI 8
           H     D+  Y      G     N VT D  Y +   L E L I
Sbjct: 448 HYFKEPDQDKY----QDGHSIENNEVTLDVIYTRCCHLREILPI 487


>sp|O93967|PALY_AMAMU Phenylalanine ammonia-lyase OS=Amanita
           muscaria GN=PAL PE=2 SV=1
          Length = 740

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 274 KYSIRPTGKRSTGFSNYDLESGFDAKSRTKLSDLSKADKPVLLHGHGLSHDDEGLYGSET 95
           K  +    K STG S Y L +GF   + T      + DKP+LL    L H   G+  + T
Sbjct: 104 KSQLAIANKVSTGASVYGLSTGFGGSADT------RTDKPMLLGFALLQHQHVGILPTST 157


>sp|O57709|GCSPB_PYRHO Probable glycine dehydrogenase
           [decarboxylating] subunit 2 OS=Pyrococcus horikoshii
           GN=gcvPB PE=3 SV=1
          Length = 502

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = +3

Query: 159 LSALDR--SDNFVRLFASNPDSRS*FENPVDLLP-----VGLILYFSAANL*GISLLVRE 317
           L AL+   S+    L  +NP++   FE+ ++ +      VG +LY+  ANL GI   VR 
Sbjct: 200 LEALENAVSERTAGLMLTNPNTLGIFEDEIEEIAKIVHKVGGLLYYDGANLNGILGKVRP 259

Query: 318 GPL 326
           G +
Sbjct: 260 GDM 262
tr_hit_id B6QUY6
Definition tr|B6QUY6|B6QUY6_PENMA Putative uncharacterized protein OS=Penicillium marneffei ATCC 18224
Align length 117
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913601|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_A11.
         (354 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6QUY6|B6QUY6_PENMA Putative uncharacterized protein OS=Penic...    39   0.17 
tr|B1VNT4|B1VNT4_STRGG Putative NRPS-type-I PKS fusion protein O...    37   0.37 
tr|B6HJ84|B6HJ84_PENCH Pc21g01880 protein OS=Penicillium chrysog...    36   1.1  
tr|A3TP74|A3TP74_9MICO Putative oxidase OS=Janibacter sp. HTCC26...    35   1.8  
tr|A2QGN5|A2QGN5_ASPNC Function: contains a Sodium:galactoside s...    35   2.4  
tr|Q174T7|Q174T7_AEDAE Transporter OS=Aedes aegypti GN=AAEL00680...    34   3.1  
tr|Q82JK0|Q82JK0_STRAW Putative multicopper oxidase, secreted OS...    33   5.4  
tr|B2B2P3|B2B2P3_PODAN Predicted CDS Pa_6_2515 OS=Podospora anse...    33   7.0  
tr|A1C734|A1C734_ASPCL Arsenite efflux transporter ArsB-like, pu...    33   9.1  

>tr|B6QUY6|B6QUY6_PENMA Putative uncharacterized protein
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_010510 PE=4
           SV=1
          Length = 870

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
 Frame = -3

Query: 346 PSQTAIVSGPSRTSSEIPHRLAAEKYSIRPTG---KRSTGFSNYDLESGFDAKSRTKLSD 176
           PS +++ +  S+TS  IP  L++++YS+ P+G     S+  S Y   S FD   +++LS 
Sbjct: 435 PSSSSVSTIMSQTSVSIPPSLSSQRYSVHPSGISSLASSPISAYQPSSIFDIVDQSELSR 494

Query: 175 LSKADKPVLL--------HGHGLSHDDEGLYGSETLSGKRRPRNMV--TADTAYEQE 35
            S  +   +L         GH LS      +    LS        V  T D  +EQ+
Sbjct: 495 PSSPESMAMLMSPKRPMWKGHRLSDTSNRSFSMPGLSFPDLDSENVIDTGDDVFEQQ 551


>tr|B1VNT4|B1VNT4_STRGG Putative NRPS-type-I PKS fusion protein
            OS=Streptomyces griseus subsp. griseus (strain JCM 4626 /
            NBRC 13350) GN=SGR_278 PE=4 SV=1
          Length = 4185

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = -3

Query: 334  AIVSGPSRTSSEIPHRLAAEKYSIRPTGKRSTGFSN----YDLESGFDAKSRTKLSDLSK 167
            A+V G +   +  PHRL  E  ++ PTG RS  FS+    +    G  A   T+L    +
Sbjct: 903  AVVGGVNLHLTSAPHRLLEEAGALSPTG-RSRAFSSDADGFVPGEGGAAIVLTRLDAARR 961

Query: 166  ADKPVLLHGHGLSHDDEGLYGSETLSGKRRPRNMVTADTAYE 41
            AD PVL    G + +++G   S       R R ++T   AYE
Sbjct: 962  ADDPVLAVVRGTAVNNDGRSMSLMAPNPLRQREVIT--RAYE 1001


>tr|B6HJ84|B6HJ84_PENCH Pc21g01880 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc21g01880 PE=4 SV=1
          Length = 641

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 29/106 (27%), Positives = 43/106 (40%)
 Frame = -3

Query: 337 TAIVSGPSRTSSEIPHRLAAEKYSIRPTGKRSTGFSNYDLESGFDAKSRTKLSDLSKADK 158
           TA +  PSR +S +               KRST  SN  L S    K  ++  + S+   
Sbjct: 148 TAPLDQPSRPASRLAR-------------KRSTSPSNRSLRSASQHKPPSRAGNKSRTSS 194

Query: 157 PVLLHGHGLSHDDEGLYGSETLSGKRRPRNMVTADTAYEQEKLLEE 20
                 HG  HDD+  Y     +  RR RN + A +    E +L++
Sbjct: 195 -----SHGGFHDDDDDYSDTESAYARRARNELFASSDISMENILQD 235


>tr|A3TP74|A3TP74_9MICO Putative oxidase OS=Janibacter sp. HTCC2649
           GN=JNB_15248 PE=4 SV=1
          Length = 507

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 220 LESGFDAKSRTKLSDLSKADKPVLLHGHGLSHDDEGLYG 104
           +  G   + R + +D + AD P + H H L H+D+GL G
Sbjct: 437 IRPGESVELRMRFTDFADADSPYMFHCHLLRHEDQGLMG 475


>tr|A2QGN5|A2QGN5_ASPNC Function: contains a Sodium:galactoside
           symporter pfam-domain. OS=Aspergillus niger (strain CBS
           513.88 / FGSC A1513) GN=An03g03930 PE=3 SV=1
          Length = 1051

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 259 PTGKRSTGFSNYDLESGFDAKSRTKLSDLSKADKPVLLHGHGLS-HDDEGLYGSETLSGK 83
           PT        NY+ + G DAKS T  S++S     V    +G S HD + + G E L G 
Sbjct: 554 PTAAIEEKLGNYETKGGLDAKSHTAASEMSLT--MVNRQSNGSSGHDSDMVQGEEKLEGP 611

Query: 82  RRPRNMVTADTAYEQ 38
              +     ++A E+
Sbjct: 612 SSTQGECLGESAVEE 626


>tr|Q174T7|Q174T7_AEDAE Transporter OS=Aedes aegypti GN=AAEL006800
           PE=3 SV=1
          Length = 970

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 136 GLSHDDEGLYGSETLSGKRRPRNMVTADTAYEQEKLLEEPL 14
           GL      LY SETLSG+RR R++  A+   +Q++L  + L
Sbjct: 827 GLEMGPRVLYNSETLSGRRRHRSLTNANGTLQQQQLQPQNL 867


>tr|Q82JK0|Q82JK0_STRAW Putative multicopper oxidase, secreted
           OS=Streptomyces avermitilis GN=SAV2755 PE=4 SV=1
          Length = 482

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 259 PTGKRSTGFSNYDLESGFDAKSRTKLSDLSKADKPVLLHGHGLSHDDEGLYGS 101
           PTG     F  Y++  G   K   + +D +      +LH H L H+DEG+  S
Sbjct: 424 PTGVDLGWFDTYEVVGGGTIKIAMQFTDFADDTYMYMLHCHLLQHEDEGMMAS 476


>tr|B2B2P3|B2B2P3_PODAN Predicted CDS Pa_6_2515 OS=Podospora
           anserina PE=4 SV=1
          Length = 279

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
 Frame = -3

Query: 349 KPSQTAIVSGPSRTSSEIPHRLAAEKYS----------------IRPTGKRSTGFSNYDL 218
           + + T  VSG +R    IPH   A+ ++                ++P G +S   S   L
Sbjct: 132 RQASTTNVSGSTRF---IPHNKPADSFNHYDAANCLQSLATAAVLQPAGTKSKRKSLEGL 188

Query: 217 ESGFDAKSRTKLSDLSKADKP-----VLLHGHGLSHDDEGLYGSETLSGKRRPRNMVTAD 53
           ES    + RT L   S A++      + L     S +++ L   ET   + +P    TA 
Sbjct: 189 ESQ-SKRQRTVLHQTSPAEEKRSVEEITLAEDETSVEEDKLAEDETSVQEDKPAEEETAQ 247

Query: 52  TAYEQEKLLEEPLGIEL 2
           T  ++EK +EEP+  E+
Sbjct: 248 TPDKEEKPVEEPIKDEI 264


>tr|A1C734|A1C734_ASPCL Arsenite efflux transporter ArsB-like,
           puative OS=Aspergillus clavatus GN=ACLA_072380 PE=4 SV=1
          Length = 754

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = -3

Query: 310 TSSEIPHRLAAEKYSIRPTGKRSTGFSNYDLESGFDAKSRTKLSDLSKADKPVLLHGHGL 131
           T+S+    + A+  S++P  + STGFS+       D +S T  S L  +   ++  G  +
Sbjct: 433 TTSDRKEEITADITSVKPPNRASTGFSS----EMSDGQSHTLASPLESSISTLVPRGDQV 488

Query: 130 SHDDEGLYGSETLSGKRR-----PRNMVTADTAYEQE 35
            +   G     TL  K+      PR M  A ++ E +
Sbjct: 489 HNGPAGTSAMNTLDEKQEFSTAPPRQMSGATSSLEMD 525