BP913617 |
Clone id |
YMU001_000032_C06 |
Library |
YMU01 |
Length |
491 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000032_C06. |
Accession |
BP913617 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2199Contig1 |
Sequence |
CACAAATGCAATCATCTGCAATTATGACGGGCGTGAGCTGCCTAAAGTTGTTGGAGTCAA TAGGATTGATCGTGTGTTGTTAGATGCGCCATGTAGTGGAACTGGGGTAGTTTCAAAGGA CCAATCTGTGAAGATGTCTAAGAGTGATGCAGATATTCAGAATAGCGCTATATTACAAAA GGAGCTGATTCTTGCTGCCATTGATATGGTTGATGCTTTCTCGAAAACAGGTGGCTATAT TGTATATTCAACATGCTCAATTACTGTAGCTGAGAACGAGGCAGTTATTGATTATGCTGT CAAAAAACGAGATGTAAAAGTGGTACCGTGCGGACTTGATTTTGGGCGACCAGGGTTTAT TCGATTTAGAGAGAAACGGTTTCATACTTCTTTAACTGAAACCCGTCGCTTTTATCCTCA TGTACACAATCTGGATGGCTTAATGGTTGCCAAGCTGAAAAAGCTGAGTAACAGCAAGGC ACCTGGAAGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46087 |
Definition |
sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens |
Align length |
158 |
Score (bit) |
220.0 |
E-value |
2.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913617|Adiantum capillus-veneris mRNA, clone: YMU001_000032_C06. (491 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NO... 220 2e-57 sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NO... 218 1e-56 sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase no... 210 2e-54 sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase No... 183 4e-46 sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransfera... 77 3e-14 sp|Q60343|Y026_METJA Putative methyltransferase MJ0026 OS=Methan... 74 3e-13 sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransfera... 74 5e-13 sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransfera... 72 1e-12 sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransfera... 70 5e-12 sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransfera... 70 5e-12 sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransfera... 70 5e-12 sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransfera... 70 7e-12 sp|Q83RJ3|RSMF_SHIFL Putative ribosomal RNA small subunit methyl... 69 1e-11 sp|Q0T529|RSMF_SHIF8 Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransfera... 69 1e-11 sp|Q6LQU5|RSMF_PHOPR Ribosomal RNA small subunit methyltransfera... 69 2e-11 sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransfera... 68 2e-11 sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransfera... 68 2e-11 sp|Q8FD12|RSMB_ECOL6 Ribosomal RNA small subunit methyltransfera... 68 2e-11 sp|Q0TCH3|RSMB_ECOL5 Ribosomal RNA small subunit methyltransfera... 68 2e-11 sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransfera... 68 3e-11
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2 Length = 812
Score = 220 bits (561), Expect = 2e-57 Identities = 108/158 (68%), Positives = 127/158 (80%) Frame = +2
Query: 2 TNAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQK 181 TN II +YDGR+ PKVVG DRVLLDAPCSGTGV+SKD +VK +K + DI A LQK Sbjct: 435 TNTIISHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQK 492
Query: 182 ELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKRDVKVVPCGLDFGRPGFI 361 EL+L+AID V+A SKTGGY+VY TCSITV ENE V+DYA+KKR+V++VP GLDFG+ GF Sbjct: 493 ELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFT 552
Query: 362 RFREKRFHTSLTETRRFYPHVHNLDGLMVAKLKKLSNS 475 RFRE+RFH SL TRRFYPH HN+DG +AK KK SNS Sbjct: 553 RFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNS 590
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1 Length = 793
Score = 218 bits (555), Expect = 1e-56 Identities = 106/158 (67%), Positives = 127/158 (80%) Frame = +2
Query: 2 TNAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQK 181 TN II +YDGR+ PKVVG DRVLLDAPCSGTGV+SKD +VK +K + DIQ A LQK Sbjct: 420 TNTIISHYDGRQFPKVVG--GFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQK 477
Query: 182 ELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKRDVKVVPCGLDFGRPGFI 361 EL+L+AID V+A SKTGGY+VY TCSITV ENE V+DYA+KKR+V++VP GLDFG+ GF Sbjct: 478 ELLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFT 537
Query: 362 RFREKRFHTSLTETRRFYPHVHNLDGLMVAKLKKLSNS 475 RF+ +RFH +L TRRFYPH HN+DG +AK KK SNS Sbjct: 538 RFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNS 575
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe GN=SPBP8B7.20c PE=1 SV=1 Length = 608
Score = 210 bits (535), Expect = 2e-54 Identities = 106/157 (67%), Positives = 128/157 (81%), Gaps = 1/157 (0%) Frame = +2
Query: 5 NAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQKE 184 NAI+CNYDGR+ P V + DRVLLDAPCSGTGV+ KDQSVK +KS+ D + LQ++ Sbjct: 391 NAIVCNYDGRKFPNEV-IGGFDRVLLDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQ 449
Query: 185 LILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKR-DVKVVPCGLDFGRPGFI 361 L+L+AID V+A SKTGG+IVYSTCSITV E+EAVI YA+KKR +VK+V GL+FGR GF Sbjct: 450 LLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFT 509
Query: 362 RFREKRFHTSLTETRRFYPHVHNLDGLMVAKLKKLSN 472 RFREKRFH SL TRR+YPHVHN+DG VAKLKK+S+ Sbjct: 510 RFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKISD 546
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae GN=NOP2 PE=1 SV=1 Length = 618
Score = 183 bits (464), Expect = 4e-46 Identities = 91/159 (57%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Frame = +2
Query: 2 TNAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQK 181 TN I+CNYD RE PKV+G DR+LLDAPCSGTGV+ KDQSVK+S+++ D LQK Sbjct: 396 TNTIVCNYDAREFPKVIG--GFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQK 453
Query: 182 ELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKR-DVKVVPCGLDFGRPGF 358 +L+L+AID VD SK GG IVYSTCS+ V E+EAVIDYA++KR +VK+V GL G+ F Sbjct: 454 QLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAF 513
Query: 359 IRFREKRFHTSLTETRRFYPHVHNLDGLMVAKLKKLSNS 475 +R K+FH S+ RR+YPH +N+DG VAK +K+ S Sbjct: 514 TSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKIGPS 552
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia proteamaculans (strain 568) GN=rsmB PE=3 SV=1 Length = 429
Score = 77.4 bits (189), Expect = 3e-14 Identities = 53/148 (35%), Positives = 76/148 (51%), Gaps = 1/148 (0%) Frame = +2
Query: 26 DGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQKELILAAID 205 DGR + G + DR+LLDAPCS TGV+ + +K + D+DI A LQ E+ I+ Sbjct: 303 DGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEI----IE 358
Query: 206 MVDAFSKTGGYIVYSTCSITVAEN-EAVIDYAVKKRDVKVVPCGLDFGRPGFIRFREKRF 382 + K+GG +VY+TCSI AEN E V + + D ++V G + +PG Sbjct: 359 AIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRHADARLVETG-NQQQPG--------- 408
Query: 383 HTSLTETRRFYPHVHNLDGLMVAKLKKL 466 R+ PH + DG AKL K+ Sbjct: 409 -------RQNLPHPEDGDGFFYAKLIKM 429
>sp|Q60343|Y026_METJA Putative methyltransferase MJ0026 OS=Methanocaldococcus jannaschii GN=MJ0026 PE=3 SV=1 Length = 274
Score = 74.3 bits (181), Expect = 3e-13 Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 3/110 (2%) Frame = +2
Query: 5 NAIICNYDGRELPKVVGVNRI--DRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQ 178 N II N D R+ + N I D++LLDAPCSG + K+++V S+ DI+ ++ Q Sbjct: 135 NTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYCSLRQ 190
Query: 179 KELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKR-DVKVV 325 KELI ID++ K G +VYSTCS+ V ENE VI Y ++KR DV+++ Sbjct: 191 KELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELI 236
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio parahaemolyticus GN=rsmF PE=3 SV=1 Length = 478
Score = 73.6 bits (179), Expect = 5e-13 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Frame = +2
Query: 5 NAIICNYDGRE----LPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAI 172 NA + N+DGR LP+ + D VLLDAPCSG G V KD+ + + A + A Sbjct: 167 NAALSNFDGRVFGGWLPE-----QFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIAD 221
Query: 173 LQKELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKRDVKVVPCGLDFGRP 352 QK+LI +A + K GG +VYSTC+++ EN+ V + + V LD Sbjct: 222 TQKDLIESAFHAL----KPGGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLD---- 273
Query: 353 GFIRFREKRFHTSLTET--RRFYPHVHNLDGLMVAKLKKLSNSKAP 484 G + + +LTE +P V++ +G VA+++K + +AP Sbjct: 274 GLF----ENANAALTEEGFLHIFPQVYDCEGFFVARIRKHHSVEAP 315
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia carotovora subsp. atroseptica GN=rsmB PE=3 SV=1 Length = 429
Score = 72.0 bits (175), Expect = 1e-12 Identities = 50/147 (34%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Frame = +2
Query: 26 DGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQKELILAAID 205 DGR DR+LLDAPCS TGV+ + +K + D DI+ LQKE+ +D Sbjct: 303 DGRYPDSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEI----LD 358
Query: 206 MVDAFSKTGGYIVYSTCSITVAEN-EAVIDYAVKKRDVKVVPCGLDFGRPGFIRFREKRF 382 + KTGG +VY+TCSI EN + V + + D +V G Sbjct: 359 AIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHADAALVDTG---------------- 402
Query: 383 HTSLTETRRFYPHVHNLDGLMVAKLKK 463 TS + PH + DG AKL K Sbjct: 403 -TSEIPGIQILPHADSGDGFFYAKLVK 428
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei (strain Ss046) GN=rsmF PE=3 SV=2 Length = 479
Score = 70.1 bits (170), Expect = 5e-12 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Frame = +2
Query: 2 TNAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQK 181 +N + ++DGR V D +LLDAPCSG GVV KD + S Q A Q+ Sbjct: 168 SNVALTHFDGRVFGAAVP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQR 226
Query: 182 ELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKRD--VKVVPCGLDFGRPG 355 ELI +A + + GG +VYSTC++ ENEAV + + V+ +P G F PG Sbjct: 227 ELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLF--PG 280
Query: 356 FIRFREKRFHTSLTET--RRFYPHVHNLDGLMVAKLKK 463 + +LTE +P +++ +G VA+L+K Sbjct: 281 --------ANKALTEEGFLHVFPQIYDCEGFFVARLRK 310
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2 Length = 479
Score = 70.1 bits (170), Expect = 5e-12 Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Frame = +2
Query: 2 TNAIICNYDGRELPKVVGVNRIDRVLLDAPCSGTGVVSKDQSVKMSKSDADIQNSAILQK 181 +N + ++DGR V D +LLDAPCSG GVV KD + S Q A Q+ Sbjct: 168 SNVALTHFDGRVFGAAVP-EMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQR 226
Query: 182 ELILAAIDMVDAFSKTGGYIVYSTCSITVAENEAVIDYAVKKRD--VKVVPCGLDFGRPG 355 ELI +A + + GG +VYSTC++ ENEAV + + V+ +P G F PG Sbjct: 227 ELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLF--PG 280
Query: 356 FIRFREKRFHTSLTET--RRFYPHVHNLDGLMVAKLKK 463 + +LTE +P +++ +G VA+L+K Sbjct: 281 --------ANKALTEEGFLHVFPQIYDCEGFFVARLRK 310
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7Q9B4 |
Definition |
tr|A7Q9B4|A7Q9B4_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
159 |
Score (bit) |
260.0 |
E-value |
3.0e-68 |
Report |
|