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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913620
Clone id YMU001_000032_C09
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATATTACCTGCAGGTACTCATGAAAAGCAAGATCTGCGGACTCAGGATTCCATTAAAAG
AGTCCATACAATCTAGTACTCTGGCAAGCAAGCAGAGCTGCAGCTTGCTAACAACTGCTA
CATTGCCAAGCCCCTCTCACTGGCAAGCTATACCTCCCCATAGCTCACACCTCTAATTCT
AACTGGTTGAACAGCACCCTTCAGCACACGGTCAAGGTGGAGTCCAAAGGTAGCGCTACG
CAGCAAGGATAGGTTCAGTCAATCGCGTGTAAATAGACATCAAAACCAATCCGTAGTAAC
CAAACCACAGGTTAATCAGAAGCATGCACTTGTTCATTCTTCTCTAAGTGAGCAAGTACG
GTTTGAGCATCCTGTACTATAGGAGAACCCTTCCTGCTCTTCTCAACAATCCTTTTTATG
AGCAACTGACCTAACTGCTCATCCAGCTCTGAATAGTATTCACTGTCATCGGACAAGTTC
CAATCGCCTTGCCTGGATGAAGGCAAAAACCTGCCAGAGCTCTTATCCACTTCTGGGTGA
A
■■Homology search results ■■ -
sp_hit_id Q292U2
Definition sp|Q292U2|PRIC1_DROPS Protein prickle OS=Drosophila pseudoobscura pseudoobscura
Align length 46
Score (bit) 35.4
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913620|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_C09.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q292U2|PRIC1_DROPS Protein prickle OS=Drosophila pseudoobscur...    35   0.18 
sp|P21263|NEST_RAT Nestin OS=Rattus norvegicus GN=Nes PE=1 SV=2        30   5.7  
sp|P37685|ALDB_ECOLI Aldehyde dehydrogenase B OS=Escherichia col...    30   7.5  

>sp|Q292U2|PRIC1_DROPS Protein prickle OS=Drosophila pseudoobscura
           pseudoobscura GN=pk PE=3 SV=3
          Length = 1353

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 36  CGLRIPLKESIQSSTLASKQSCSLLTTATLPSPSHWQAIPPHSSHL 173
           CG  + L  S  +S L + Q+  +L T+ LP   H Q +PPH   L
Sbjct: 417 CGSALGLPSSSSASALYAAQNGGMLPTSPLPLQRHQQYLPPHHQQL 462


>sp|P21263|NEST_RAT Nestin OS=Rattus norvegicus GN=Nes PE=1 SV=2
          Length = 1893

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 533  EVDKSSGRFLPSSRQGDWNLSD-DSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTV 357
            E D+ +GR L    Q      + + +    L E+  Q  +K   E  R G P+ ++ Q  
Sbjct: 820  EEDQEAGRSLQKENQEPLGYEEAEDQMLERLIEKESQESLKSPEENQRIGKPLERENQKS 879

Query: 356  LAHLEKNEQ 330
            L +LE+N++
Sbjct: 880  LRYLEENQE 888


>sp|P37685|ALDB_ECOLI Aldehyde dehydrogenase B OS=Escherichia coli
           (strain K12) GN=aldB PE=1 SV=2
          Length = 512

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 488 GDWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVLAHLEKNEQVHAS 318
           G+W    D EYY  L    GQLL + +    ++   +  DA    AH  K++  H S
Sbjct: 31  GEWVAPADGEYYQNLTPVTGQLLCE-VASSGKRDIDLALDA----AHKVKDKWAHTS 82
tr_hit_id A9RY29
Definition tr|A9RY29|A9RY29_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 61
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913620|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_C09.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RY29|A9RY29_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A9T3T2|A9T3T2_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9STT0|A9STT0_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.016
tr|A9SSC4|A9SSC4_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.016
tr|A7PDA5|A7PDA5_VITVI Chromosome chr17 scaffold_12, whole genom...    42   0.027
tr|A5B073|A5B073_VITVI Putative uncharacterized protein OS=Vitis...    42   0.027
tr|Q9FNR0|Q9FNR0_ARATH Emb|CAB62613.1 OS=Arabidopsis thaliana GN...    41   0.035
tr|Q0WPB4|Q0WPB4_ARATH Putative uncharacterized protein At5g6104...    41   0.035
tr|A7P2F2|A7P2F2_VITVI Chromosome chr1 scaffold_5, whole genome ...    39   0.17 
tr|B5JL06|B5JL06_9BACT FG-GAP repeat domain protein OS=Verrucomi...    38   0.39 
tr|B4GCM4|B4GCM4_DROPE GL11157 OS=Drosophila persimilis GN=GL111...    37   0.86 
tr|Q2QN77|Q2QN77_ORYSJ Expressed protein (Putative uncharacteriz...    35   3.3  
tr|Q2QN76|Q2QN76_ORYSJ Os12g0576300 protein OS=Oryza sativa subs...    35   3.3  
tr|A2ZLY9|A2ZLY9_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.3  
tr|Q9SD83|Q9SD83_ARATH Putative uncharacterized protein F13G24.2...    34   5.6  
tr|B7VPV2|B7VPV2_VIBSP Transposase of insertion sequence ISVisp2...    34   5.7  
tr|Q92A22|Q92A22_LISIN Lin2100 protein OS=Listeria innocua GN=li...    33   9.7  

>tr|A9RY29|A9RY29_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_161699 PE=4 SV=1
          Length = 1693

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = -3

Query: 500  SSRQGDWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGS-PIVQDAQTVLAHLEKNEQVH 324
            +S   D N+  +     E +E  G++LIKRIVEKS+ GS  +V+ AQT LA LE+++ V 
Sbjct: 1465 NSEYDDVNIFSEDNLILEAEEMFGRMLIKRIVEKSKHGSDSLVKKAQTALATLERDDGVE 1524

Query: 323  A 321
            A
Sbjct: 1525 A 1525


>tr|A9T3T2|A9T3T2_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_87705 PE=4 SV=1
          Length = 1147

 Score = 43.1 bits (100), Expect = 0.009
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = -3

Query: 485  DWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPI-VQDAQTVLAHLEKNEQV 327
            D+N+  +     E +E LG++LIKR VEK++ GS + V+ AQ+ LA LE+ + +
Sbjct: 904  DFNVFSEENLVLEAEEMLGRMLIKRFVEKAKCGSDVLVKKAQSALATLERRDSM 957


>tr|A9STT0|A9STT0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_83900 PE=4 SV=1
          Length = 1549

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = -3

Query: 479  NLSDDSEYYSELDEQLGQLLIKRIVEKSRKGS-PIVQDAQTVLAHLEKNEQV 327
            N+  +     E DE L ++LIKRIVE+S+ GS  +V+ AQT LA LE+ + V
Sbjct: 1323 NVFSEENLMLEADEMLERMLIKRIVEESKFGSDSLVRKAQTALATLEREDSV 1374


>tr|A9SSC4|A9SSC4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_233998 PE=4 SV=1
          Length = 1520

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 22/56 (39%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = -3

Query: 485  DWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGS-PIVQDAQTVLAHLEKNEQVHA 321
            D N+  +     E +E LG++L++RIVEKS+  +  +V+ AQT LA LE+++++ A
Sbjct: 1262 DDNVFSEDNLLLETEEILGRMLVQRIVEKSKHAAGSLVKKAQTALATLERDDRIEA 1317


>tr|A7PDA5|A7PDA5_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016202001
           PE=4 SV=1
          Length = 497

 Score = 41.6 bits (96), Expect = 0.027
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = -3

Query: 485 DWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVLAHLEKNE 333
           D  LS D E   E D+++ +LLI++IVEKSR+GSPIV + Q  L  +++NE
Sbjct: 448 DRELSGD-ENNDEADDEM-KLLIQQIVEKSRQGSPIVLNVQRALFSVDENE 496


>tr|A5B073|A5B073_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038161 PE=4 SV=1
          Length = 748

 Score = 41.6 bits (96), Expect = 0.027
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = -3

Query: 485 DWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVLAHLEKNE 333
           D  LS D E   E D+++ +LLI++IVEKSR+GSPIV + Q  L  +++NE
Sbjct: 699 DRELSGD-ENNDEADDEM-KLLIQQIVEKSRQGSPIVLNVQRALFSVDENE 747


>tr|Q9FNR0|Q9FNR0_ARATH Emb|CAB62613.1 OS=Arabidopsis thaliana
           GN=At5g61040 PE=4 SV=1
          Length = 590

 Score = 41.2 bits (95), Expect = 0.035
 Identities = 19/48 (39%), Positives = 34/48 (70%)
 Frame = -3

Query: 476 LSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVLAHLEKNE 333
           + D+ E  S+   ++ + LIK+IVEK+++GSP+V +AQ +L  +E+ E
Sbjct: 540 IEDEEEKSSDFVNEMEKQLIKQIVEKTKQGSPVVLNAQKMLFLMEETE 587


>tr|Q0WPB4|Q0WPB4_ARATH Putative uncharacterized protein At5g61040
           OS=Arabidopsis thaliana GN=At5g61040 PE=2 SV=1
          Length = 590

 Score = 41.2 bits (95), Expect = 0.035
 Identities = 19/48 (39%), Positives = 34/48 (70%)
 Frame = -3

Query: 476 LSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVLAHLEKNE 333
           + D+ E  S+   ++ + LIK+IVEK+++GSP+V +AQ +L  +E+ E
Sbjct: 540 IEDEEEKSSDFVNEMEKQLIKQIVEKTKQGSPVVLNAQKMLFLMEETE 587


>tr|A7P2F2|A7P2F2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030034001
           PE=4 SV=1
          Length = 561

 Score = 38.9 bits (89), Expect = 0.17
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = -3

Query: 482 WNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQTVL 354
           W  ++  E   + ++++G+LLIK+IVEK+R+GS  V  AQ +L
Sbjct: 513 WGSNEVGESEDDEEDEMGKLLIKQIVEKTRQGSAAVLHAQRML 555


>tr|B5JL06|B5JL06_9BACT FG-GAP repeat domain protein
           OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_1121
           PE=4 SV=1
          Length = 1199

 Score = 37.7 bits (86), Expect = 0.39
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = -3

Query: 539 HPEVDKSSGRFLPSSRQGDWNLSDDSEYYSELDEQLGQLLIKRIVEKSRKGSPIVQDAQT 360
           +PE  K+S +F   S +   N S + +YY+EL +QL  LL +R+   S++G  +  DA  
Sbjct: 619 NPEAYKASSQFTEVSTELGLNYSHEEDYYNELTDQL--LLPRRL---SKQGPALAYDASN 673

Query: 359 VLAHLEKN 336
              H+  N
Sbjct: 674 KTLHISGN 681