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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913628
Clone id YMU001_000032_D06
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTCACGGTACTGCTTCGCTATCGGTCACTCAGGAATATTTAGCCTTACAAGGTGGTCC
TCGCTGATTCACACGGGATTTTGCGTGCCCCATGCTACTTGGGTTGGAGCGTGAGCTAGC
TGTACTTCCGGCTACTGGACTATCACCATCTGGGGTGCAGCACTCAACTGCTTCGCCTAG
TAAAACGAAGCCCTCATCACTCTCCTACAACCCCGTCTTCACGGTTTAGGCTCTTCCCGT
TTCACTCGCCGTTACTAGGGGAATCGTTTTTGCTTTTTCCTCCTCCGGCTACTAAGATGT
TTCAATTCGCCGGGTTGTCTCTTGTCTGCTTCTGAATTCAGCAGGCAGTTTGGAAGGTTA
ACCTATTCGGGAATCTCCGGATCTATACCTATTTTCGGCTCCCCGAAGCATTTCGTCGTT
TGCCACGCCCTTCTTCGTCTCTGGATGCCTAGGTATCCACCGCAAGCCTTT
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913628|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_D06.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   0.82 
sp|Q96J92|WNK4_HUMAN Serine/threonine-protein kinase WNK4 OS=Hom...    30   7.1  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   7.1  
sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1     30   7.1  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   7.1  
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   7.1  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 240 FHSPLLGESFLLFPPPATKMFQFAGLSL 323
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q96J92|WNK4_HUMAN Serine/threonine-protein kinase WNK4 OS=Homo
            sapiens GN=WNK4 PE=1 SV=1
          Length = 1243

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 26/86 (30%), Positives = 33/86 (38%)
 Frame = -1

Query: 354  SKLPAEFRSRQETTRRIETS**PEEEKAKTIPLVTASETGRA*TVKTGL*ESDEGFVLLG 175
            SK PAE    Q T+  +  S  P   +  +    T    G     +  L ESD     LG
Sbjct: 1022 SKEPAEPLPLQPTSPTLSGSPKPSTPQLTSESSDTEDSAGGGPETREALAESDRAAEGLG 1081

Query: 174  EAVECCTPDGDSPVAGSTASSRSNPS 97
              VE    DG  P  G +    S+PS
Sbjct: 1082 AGVEEEGDDGKEPQVGGSPQPLSHPS 1107


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 159 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 52
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=1
          Length = 4998

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 13   CFAIGHSGIFSLTRWSSLIHTGFCVPHATWVGA*ASCTSGYWTI 144
            C + G  G+  LT WS     G C+P +    A  +   G+W +
Sbjct: 4364 CSSQGCEGLLPLTGWSEWSPCGPCLPQSALAPASRTALEGHWPL 4407


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 159 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 52
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 204 ESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 100
           E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 116 ECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154
tr_hit_id Q6R9L5
Definition tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct OS=Zea mays
Align length 59
Score (bit) 96.7
E-value 5.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913628|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_D06.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    97   5e-19
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    90   5e-17
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    89   1e-16
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    89   1e-16
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    89   1e-16
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    89   1e-16
tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    77   2e-15
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    75   2e-12
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            58   3e-11
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    66   1e-10
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    67   4e-10
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    65   2e-09
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            62   1e-08
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    59   2e-07
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    58   2e-07
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    57   4e-07
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    55   2e-06
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    55   2e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    55   2e-06
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   5e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    54   5e-06
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    54   5e-06
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    53   9e-06
tr|Q4MFR6|Q4MFR6_BACCE Putative uncharacterized protein OS=Bacil...    52   1e-05
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    52   1e-05
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    52   2e-05
tr|Q6HPB8|Q6HPB8_BACHK Putative uncharacterized protein OS=Bacil...    52   2e-05
tr|Q4MQX2|Q4MQX2_BACCE Putative uncharacterized protein OS=Bacil...    52   2e-05

>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 46/59 (77%), Positives = 52/59 (88%)
 Frame = -1

Query: 471 KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAEFRSRQETTRRIETS 295
           KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPAE  SRQETT R ETS
Sbjct: 63  KGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAESMSRQETTWRTETS 121


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 63/158 (39%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
 Frame = +2

Query: 2   PHGTASLSVTQEYLALQGGPR*FTRDFACPMLLGLERELAVLPATGLSPSGVQHXXXXXX 181
           PHGT+SLSVT+EYL L+ GP  F +DF CP LL  +        TGLSP+  +       
Sbjct: 108 PHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFT---PTGLSPAMARLSRRFRL 164

Query: 182 XXXXXXXXYNPVFTV*ALPVSLAVTRGIVFAFSSSGY*DVSIR--RVVSCLLLNSAGSLE 355
                             P SLA T G+     SSGY DVS+R  R+++  +        
Sbjct: 165 CKYQHWPG----------PRSLATTNGVSVDVLSSGYLDVSVRPVRLLNLCIQFRITLRW 214

Query: 356 G*PIRESPDLYLFSAPRSISSFATPFFVSGCLGIHRKP 469
           G PIR S D  L SAPR  S  AT F  S C GIH  P
Sbjct: 215 GFPIRISTDQSLLSAPRGFSQSATSFIASQCQGIHEMP 252


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = -1

Query: 168 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 7
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = -1

Query: 168 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 7
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = -1

Query: 168 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 7
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = -1

Query: 168 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 7
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 59

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 43/59 (72%), Positives = 50/59 (84%)
 Frame = -1

Query: 471 KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAEFRSRQETTRRIETS 295
           KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPAE  SRQETT R ETS
Sbjct: 1   KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPAESMSRQETTWRTETS 59


>tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 56

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 42/56 (75%), Positives = 49/56 (87%)
 Frame = -1

Query: 462 RWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAEFRSRQETTRRIETS 295
           RWIPR+PET+KGVA+DEMLRG EN++RSGDS+IG P +LPAE  SRQETT R ETS
Sbjct: 1   RWIPRYPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAESMSRQETTWRTETS 56


>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 77.4 bits (189), Expect(2) = 2e-15
 Identities = 48/85 (56%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
 Frame = +3

Query: 225 FRLFPFHSPLLGESFLLFPPPATKMFQFAGLSLVCF*IQQAV------WKVNLFGNLRIY 386
           F LFPF SPLL ES LL  PP TKMFQF G +L    IQ  +      W V  FG+LRI 
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCALHALWIQAWILPHYGQW-VPPFGHLRIN 125

Query: 387 TYFRLPEAFRRLPRPSSSLDA*VST 461
              +LPEAFRRLPRPSS+  A  ST
Sbjct: 126 ACLQLPEAFRRLPRPSSAPSAKAST 150



 Score = 28.1 bits (61), Expect(2) = 2e-15
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 56  GPR*FTRDFACPMLLGLERELAVLPATGLSPS 151
           GP  F RD +CP +L +      +  TGLSPS
Sbjct: 4   GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = -1

Query: 147 GDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 7
           G+SPV+ S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 1   GESPVSESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47