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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913631
Clone id YMU001_000032_D11
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCATGGCAGAGGTTTTGGACTGTTTTTCCTTCTCCAACATCTCAGAGCAACG
CGCGAGACAATGGGATCTTGTCTTTGGGACGAACACACATAAGATAGCGCTTTCTCTGGT
CAGGAGTGCTGCCTTGATGACCTTGATTGAGGATGTCAGGGAGCTGTAAGGTTGTAATTG
TAAGCTGTTTATTGTAGTGGTGCATTTTAGCCCTTGGCTAGTGGTTTTCCCCTTTTGAGT
TACTTAGAGTCGATAGTGTGTCTAGTTCCTGGCCTTTTTAGACCTTACAAAGCGGCTTCT
TACTTATTTGACTGAACTTTGGGCATGTAGAACAATCCTCCACATTCTTTTACTGATCTG
TAAGCCATTGGTTGACTTGGCTTTTTACAGCATTCAATTGTGCAGTTGCTTTCCTTGTAC
TAACCTCAAAAGAGGCCCACAAGCAATATGTAGCTTGAGAGACCCAATGTGTATCTTGAA
GCAAATTAAGAAAATCTTAAAGTTTTGATAGACATCAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8VZS9
Definition sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana
Align length 29
Score (bit) 41.2
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913631|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_D11.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thal...    41   0.003
sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thal...    39   0.011
sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thal...    35   0.27 
sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (s...    31   3.9  
sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus (...    30   5.1  
sp|Q8CRA8|HSSS_STAES Heme sensor protein hssS OS=Staphylococcus ...    30   6.7  
sp|Q5HLN1|HSSS_STAEQ Heme sensor protein hssS OS=Staphylococcus ...    30   8.7  

>sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis
           thaliana GN=FZR1 PE=1 SV=1
          Length = 475

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 19/29 (65%), Positives = 20/29 (68%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQS   + G LS GRT IR
Sbjct: 447 RFWNVFPSPKSQSRESEIGALSFGRTTIR 475


>sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis
           thaliana GN=FZR3 PE=1 SV=1
          Length = 481

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPS   Q+  +D G+ SLGRT IR
Sbjct: 453 RFWNVFPSVKMQTPVKDTGLWSLGRTQIR 481


>sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis
           thaliana GN=FZR2 PE=1 SV=1
          Length = 483

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQ+   + G    GRT IR
Sbjct: 455 RFWNVFPSPKSQNTDSEIGSSFFGRTTIR 483


>sp|P10033|SPIKE_FIPV Spike glycoprotein OS=Feline coronavirus (strain
            FIPV WSU-79/1146) GN=S PE=1 SV=1
          Length = 1452

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 269  LAFLDLTKRLLTYLTELWACRTILHILLLICKPLVDLAFYSIQLCSCFPCTNLKRGPQAI 448
            L  L+   R+ TY+   W    ++ ++++ C PL+    +S   C C  C  L     +I
Sbjct: 1377 LVNLEWLNRIETYVKWPWYVWLLIGLVVVFCIPLLLFCCFSTGCCGCIGC--LGSCCHSI 1434

Query: 449  CSLR 460
            CS R
Sbjct: 1435 CSRR 1438


>sp|Q7T6T3|SPIKE_CVCBG Spike glycoprotein OS=Canine coronavirus
            (strain BGF10) GN=S PE=3 SV=1
          Length = 1453

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 269  LAFLDLTKRLLTYLTELWACRTILHILLLICKPLVDLAFYSIQLCSCFPC 418
            L  L+   R+ TY+   W    ++ ++++ C PL+     S   C CF C
Sbjct: 1378 LVNLEWLNRIETYVKWPWYVWLLIGLVVIFCIPLLLFCCCSTGCCGCFGC 1427


>sp|Q8CRA8|HSSS_STAES Heme sensor protein hssS OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=hssS PE=3 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +3

Query: 216 G*WFSPFELLRVDSVSSSWPF*TLQSGFLLI*LNFGHVEQSSTFFY*SVSHWLTWLFTAF 395
           G + +P +  R D +       TLQS F  +  N G V+Q    F  +VSH +    T  
Sbjct: 205 GDFSTPIKQTRHDEIG------TLQSRFNTMRQNLGQVDQMRQHFVQNVSHEIKTPLTHL 258

Query: 396 NCAVAFLVLTSKEAHKQ 446
              +  L LT  E  KQ
Sbjct: 259 QRLLTQLELTQNEEEKQ 275


>sp|Q5HLN1|HSSS_STAEQ Heme sensor protein hssS OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=hssS PE=3
           SV=1
          Length = 451

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +3

Query: 216 G*WFSPFELLRVDSVSSSWPF*TLQSGFLLI*LNFGHVEQSSTFFY*SVSHWLTWLFTAF 395
           G + +P +  R D +       TLQS F  +  N G V+Q    F  +VSH +    T  
Sbjct: 205 GDFSTPIKQTRHDEIG------TLQSRFNTMRQNLGQVDQMRQHFVQNVSHEVKTPLTHL 258

Query: 396 NCAVAFLVLTSKEAHKQ 446
              +  L LT  E  KQ
Sbjct: 259 QRLLTQLELTQNEEEKQ 275
tr_hit_id A9STT8
Definition tr|A9STT8|A9STT8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 29
Score (bit) 50.4
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913631|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_D11.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9STT8|A9STT8_PHYPA Predicted protein OS=Physcomitrella paten...    50   5e-05
tr|A9SS69|A9SS69_PHYPA Predicted protein OS=Physcomitrella paten...    50   5e-05
tr|A9T3S5|A9T3S5_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|B8LPX8|B8LPX8_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A9T839|A9T839_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.011
tr|Q9XED5|Q9XED5_MEDVA Cell cycle switch protein OS=Medicago var...    42   0.023
tr|Q9M7I2|Q9M7I2_MEDTR WD-repeat cell cycle regulatory protein O...    42   0.023
tr|Q4TU47|Q4TU47_PEA Cell cycle switch protein CCS52A OS=Pisum s...    42   0.023
tr|A7PIS7|A7PIS7_VITVI Chromosome chr13 scaffold_17, whole genom...    40   0.068
tr|A5BRF9|A5BRF9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.068
tr|A7QKC9|A7QKC9_VITVI Chromosome chr2 scaffold_112, whole genom...    40   0.089
tr|A5BAG1|A5BAG1_VITVI Putative uncharacterized protein OS=Vitis...    40   0.089
tr|Q6V5L1|Q6V5L1_LUPLU Cell cycle switch protein CCS52a OS=Lupin...    39   0.12 
tr|Q6UZ79|Q6UZ79_MEDTR B-type cell cycle switch protein ccs52B O...    38   0.34 
tr|Q6T2Z5|Q6T2Z5_SOYBN WD-repeat cell cycle regulatory protein O...    38   0.34 
tr|Q5JM92|Q5JM92_ORYSJ Putative cell cycle switch protein (Os01g...    37   0.44 
tr|B8A9X3|B8A9X3_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.44 
tr|B6T9C7|B6T9C7_MAIZE Fizzy-related protein OS=Zea mays PE=2 SV=1     37   0.44 
tr|B4FG61|B4FG61_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.44 
tr|Q4TU48|Q4TU48_LOTJA Cell cycle switch protein CCS52A OS=Lotus...    36   0.98 
tr|B8C5C7|B8C5C7_THAPS Predicted protein OS=Thalassiosira pseudo...    34   5.0  
tr|Q5SCA6|Q5SCA6_OSTTA Cell cycle switch protein OS=Ostreococcus...    33   8.3  
tr|Q00WT3|Q00WT3_OSTTA Cell cycle switch protein CCS52A (ISS) OS...    33   8.3  

>tr|A9STT8|A9STT8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_58645 PE=4 SV=1
          Length = 472

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQS  RD G+ SLGRTHIR
Sbjct: 444 RFWNVFPSPKSQSAVRDTGVWSLGRTHIR 472


>tr|A9SS69|A9SS69_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_83285 PE=4 SV=1
          Length = 468

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQS  RD G+ SLGRTHIR
Sbjct: 440 RFWNVFPSPKSQSAVRDTGVWSLGRTHIR 468


>tr|A9T3S5|A9T3S5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_139794 PE=4 SV=1
          Length = 471

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQS  RDN + SLGRT+IR
Sbjct: 443 RFWNVFPSPKSQSVVRDNEVWSLGRTYIR 471


>tr|B8LPX8|B8LPX8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 508

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW +FPSP SQS   D+G+ SLGRT IR
Sbjct: 480 RFWNIFPSPKSQSAVHDSGLWSLGRTQIR 508


>tr|A9T839|A9T839_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219794 PE=4 SV=1
          Length = 516

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPS  SQ+   D G+ SLGRTHIR
Sbjct: 488 RFWNVFPSSKSQNAVPDAGVWSLGRTHIR 516


>tr|Q9XED5|Q9XED5_MEDVA Cell cycle switch protein OS=Medicago varia
           GN=ccs52 PE=2 SV=1
          Length = 475

 Score = 41.6 bits (96), Expect = 0.023
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQ+   + G LSLGRT IR
Sbjct: 447 RFWNVFPSPKSQNTESEIGALSLGRTTIR 475


>tr|Q9M7I2|Q9M7I2_MEDTR WD-repeat cell cycle regulatory protein
           OS=Medicago truncatula GN=CCS52 PE=4 SV=1
          Length = 475

 Score = 41.6 bits (96), Expect = 0.023
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQ+   + G LSLGRT IR
Sbjct: 447 RFWNVFPSPKSQNTESEIGALSLGRTTIR 475


>tr|Q4TU47|Q4TU47_PEA Cell cycle switch protein CCS52A OS=Pisum
           sativum PE=2 SV=1
          Length = 475

 Score = 41.6 bits (96), Expect = 0.023
 Identities = 19/29 (65%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW VFPSP SQ+   + G LSLGRT IR
Sbjct: 447 RFWNVFPSPKSQNTESEIGALSLGRTTIR 475


>tr|A7PIS7|A7PIS7_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018459001
           PE=4 SV=1
          Length = 471

 Score = 40.0 bits (92), Expect = 0.068
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW +FPS  + +  +D G+ S+GRTHIR
Sbjct: 443 RFWNIFPSMKTPAPVKDTGVWSMGRTHIR 471


>tr|A5BRF9|A5BRF9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042043 PE=4 SV=1
          Length = 456

 Score = 40.0 bits (92), Expect = 0.068
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 18  RFWTVFPSPTSQSNARDNGILSLGRTHIR 104
           RFW +FPS  + +  +D G+ S+GRTHIR
Sbjct: 428 RFWNIFPSMKTPAPVKDTGVWSMGRTHIR 456