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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913638
Clone id YMU001_000032_E07
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGTTTATGAACAGCAAAGTCATGTTCACCTTAGTCAGGAAAGATGCCAATTTTGACAAA
TTTTTACCAGTTGCTCTCCATGTGAATTATCATCCAGACAAGTATGACCGCATGCTAGCT
TTGGTTGAGTATTTTGTCGATGGGAAAAACGATGCTTTGAAGAGATTTCCAGATGGATCA
GAGTGGAGGTGACAGGTAATTCTAAGTTTATGATGGAGCAATAGATTGAAAATACCTGCT
ATTTATAGCAGACTGAGCTTAAGGCATAGTGTATAACATATCATATGTGATTCTATGATG
AGCTTGTATTTCATCCAATGGTCTGTGCCCGTCGTCTCCGGGTGAATGGGACCGTCTTCC
CAATTTTTACCTCCTCTGTTTCTGTTTATGTAGCAAAAATGCTACCTACAATGTAAAAGT
TGACAGATGTGGCATCACAGCTTCTTCATGTAATGGGAAGCAACAGTGTGGCACAGCAGC
AGCTGGTTGTTGCACGAACCTTTTTGTAGCGTCTTGAACTTGATTCATCTCAAGGTTTAC
AGTTTTCAGAATTCGCGA
■■Homology search results ■■ -
sp_hit_id P96642
Definition sp|P96642|YDDE_BACSU Uncharacterized protein yddE OS=Bacillus subtilis
Align length 41
Score (bit) 30.8
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913638|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_E07.
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P96642|YDDE_BACSU Uncharacterized protein yddE OS=Bacillus su...    31   4.7  
sp|Q9WUW3|CFAI_RAT Complement factor I OS=Rattus norvegicus GN=C...    30   6.1  
sp|P05106|ITB3_HUMAN Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE...    30   8.0  
sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1     30   8.0  

>sp|P96642|YDDE_BACSU Uncharacterized protein yddE OS=Bacillus
           subtilis GN=yddE PE=4 SV=1
          Length = 831

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 117 SFG*VFCRWEKRCFEEISRWIRVEVTGNSKFMMEQ*IENTC 239
           +FG  F   E    EE+ +W+ +EVT ++K MME   +  C
Sbjct: 750 NFGVAFAFDEPNEREEVLKWMNMEVTKDNKKMMESMFQGQC 790


>sp|Q9WUW3|CFAI_RAT Complement factor I OS=Rattus norvegicus GN=Cfi
           PE=2 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -2

Query: 296 IESHMICYTLCLKLSLL*IAGIFNLLLHHKLRITCHLHSDPSGNLFKASFFPSTKYSTKA 117
           +E+++ C+ L   L +  I G FN+ ++HK+  T  LH    G     +    TK S+KA
Sbjct: 151 VEANVACFDLGFPLGVRDIQGRFNIPVNHKINSTECLHVRCQGVETSLAECTFTKKSSKA 210


>sp|P05106|ITB3_HUMAN Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE=1
           SV=2
          Length = 788

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 305 CISSNGLCPSSPGEWDRLPNFYLLC-FCLCSKNATYNVKVDRCGITASSCNGKQQC 469
           C+SSNGL  S  G+ +        C  C+C +  +Y    ++C     +C  K++C
Sbjct: 593 CMSSNGLLCSGRGKCE--------CGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 640


>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1
          Length = 2907

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 317  NGLCPSSPGEWDRL--PNFYLLCF---CLCSKNATYNVKVDRCGITASSCNGKQQCGTAA 481
            NGLC ++PG ++    P+F L      C+ ++     +K    G  + SCN +   G + 
Sbjct: 1537 NGLCVNTPGRYECNCPPDFQLNATGVGCVDNRVGNCYLKFGPRGDGSLSCNTEAGVGVSR 1596

Query: 482  AGCCTNL 502
            + CC +L
Sbjct: 1597 SSCCCSL 1603
tr_hit_id A9TJS2
Definition tr|A9TJS2|A9TJS2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 61
Score (bit) 94.7
E-value 3.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913638|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_E07.
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJS2|A9TJS2_PHYPA Predicted protein OS=Physcomitrella paten...    95   3e-18
tr|B4FMQ1|B4FMQ1_MAIZE Putative uncharacterized protein OS=Zea m...    91   3e-17
tr|A7NTG5|A7NTG5_VITVI Chromosome chr18 scaffold_1, whole genome...    90   7e-17
tr|A7P946|A7P946_VITVI Chromosome chr3 scaffold_8, whole genome ...    90   9e-17
tr|A5B7F5|A5B7F5_VITVI Putative uncharacterized protein OS=Vitis...    90   9e-17
tr|B8LL91|B8LL91_PICSI Putative uncharacterized protein OS=Picea...    88   4e-16
tr|A9PCD2|A9PCD2_POPTR Putative uncharacterized protein OS=Popul...    88   4e-16
tr|B4FA71|B4FA71_MAIZE Putative uncharacterized protein OS=Zea m...    87   6e-16
tr|Q6ZIQ4|Q6ZIQ4_ORYSJ Putative uncharacterized protein OJ1047_C...    87   8e-16
tr|Q0D524|Q0D524_ORYSJ Os07g0587100 protein OS=Oryza sativa subs...    87   8e-16
tr|B8B840|B8B840_ORYSI Putative uncharacterized protein OS=Oryza...    87   8e-16
tr|A3BLN5|A3BLN5_ORYSJ Putative uncharacterized protein OS=Oryza...    87   8e-16
tr|B4FJ90|B4FJ90_MAIZE Putative uncharacterized protein OS=Zea m...    86   1e-15
tr|A9TWS4|A9TWS4_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9PEB1|A9PEB1_POPTR Putative uncharacterized protein OS=Popul...    85   2e-15
tr|B6TAQ7|B6TAQ7_MAIZE Putative uncharacterized protein OS=Zea m...    84   7e-15
tr|Q9C9Q5|Q9C9Q5_ARATH Putative uncharacterized protein F9E10.4 ...    81   4e-14
tr|Q8LCK7|Q8LCK7_ARATH Putative uncharacterized protein OS=Arabi...    81   4e-14
tr|Q9LN62|Q9LN62_ARATH F18O14.8 (Putative uncharacterized protei...    78   3e-13
tr|Q9C9Q6|Q9C9Q6_ARATH Putative uncharacterized protein F9E10.3 ...    77   8e-13
tr|Q84R12|Q84R12_ARATH Putative uncharacterized protein At1g7512...    77   8e-13
tr|A8I3B1|A8I3B1_CHLRE Predicted protein OS=Chlamydomonas reinha...    62   3e-08
tr|A8J2E5|A8J2E5_CHLRE Predicted protein OS=Chlamydomonas reinha...    60   6e-08
tr|Q017D5|Q017D5_OSTTA Homology to unknown gene OS=Ostreococcus ...    48   3e-04
tr|A4RW03|A4RW03_OSTLU Predicted protein (Fragment) OS=Ostreococ...    47   0.001
tr|Q01B04|Q01B04_OSTTA Homology to unknown gene OS=Ostreococcus ...    44   0.006
tr|A4RYS5|A4RYS5_OSTLU Predicted protein (Fragment) OS=Ostreococ...    42   0.023
tr|A0DMF8|A0DMF8_PARTE Chromosome undetermined scaffold_56, whol...    36   1.6  
tr|B4DC53|B4DC53_9BACT Putative uncharacterized protein OS=Chtho...    35   3.6  
tr|Q5KN50|Q5KN50_CRYNE Putative uncharacterized protein OS=Crypt...    35   3.6  

>tr|A9TJS2|A9TJS2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222973 PE=4 SV=1
          Length = 299

 Score = 94.7 bits (234), Expect = 3e-18
 Identities = 41/61 (67%), Positives = 52/61 (85%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LFMNSKV+F ++RK+ +F ++ PV +HVNYHPDKYDRMLA+VEY+V G   AL+RFPDGS
Sbjct: 238 LFMNSKVLFKILRKEKDFAEYKPVTIHVNYHPDKYDRMLAIVEYYVKGNTKALQRFPDGS 297

Query: 181 E 183
           E
Sbjct: 298 E 298


>tr|B4FMQ1|B4FMQ1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score = 91.3 bits (225), Expect = 3e-17
 Identities = 41/61 (67%), Positives = 50/61 (81%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LFMNSKV+F  VRKDAN     PV +H+NYHPDK DRM A++E++VDGK +AL+RFPDGS
Sbjct: 363 LFMNSKVLFKTVRKDANLRTLKPVIVHLNYHPDKSDRMKAVIEFYVDGKQNALERFPDGS 422

Query: 181 E 183
           E
Sbjct: 423 E 423


>tr|A7NTG5|A7NTG5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014656001
           PE=4 SV=1
          Length = 434

 Score = 90.1 bits (222), Expect = 7e-17
 Identities = 41/62 (66%), Positives = 47/62 (75%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LFMNSKV+F  VRKDA   K  PV +HVNYHPDK  RM A+VE++V+GK DAL  FPDGS
Sbjct: 373 LFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKLSRMKAVVEFYVNGKQDALDPFPDGS 432

Query: 181 EW 186
            W
Sbjct: 433 NW 434


>tr|A7P946|A7P946_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036423001
           PE=4 SV=1
          Length = 232

 Score = 89.7 bits (221), Expect = 9e-17
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LF+NSKV+F  VRKDAN  K  PV +H+NYHPDK  RM A++E+++DG  DALK FPDGS
Sbjct: 171 LFLNSKVLFRTVRKDANLIKTKPVTVHINYHPDKLARMKAVMEFYMDGNLDALKPFPDGS 230

Query: 181 EW 186
           EW
Sbjct: 231 EW 232


>tr|A5B7F5|A5B7F5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034847 PE=4 SV=1
          Length = 252

 Score = 89.7 bits (221), Expect = 9e-17
 Identities = 40/62 (64%), Positives = 49/62 (79%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LF+NSKV+F  VRKDAN  K  PV +H+NYHPDK  RM A++E+++DG  DALK FPDGS
Sbjct: 191 LFLNSKVLFRTVRKDANLIKTKPVTVHINYHPDKLARMKAVMEFYMDGNLDALKPFPDGS 250

Query: 181 EW 186
           EW
Sbjct: 251 EW 252


>tr|B8LL91|B8LL91_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 432

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 38/62 (61%), Positives = 47/62 (75%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LF+NSKV+FT  RK+     + PV +H+NYHPDK  RM A+VEY+V GK +ALK FPDGS
Sbjct: 371 LFLNSKVLFTKFRKEPKMPSYKPVIIHINYHPDKLPRMKAVVEYYVHGKKEALKPFPDGS 430

Query: 181 EW 186
           EW
Sbjct: 431 EW 432


>tr|A9PCD2|A9PCD2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 435

 Score = 87.8 bits (216), Expect = 4e-16
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LFMNSKV+F  VRK+AN  K  PV +H+NYHPDK  RM A+VE++V+GK DAL  FPDGS
Sbjct: 375 LFMNSKVLFKTVRKNANLRKIKPVIVHINYHPDKLPRMQAVVEFYVNGKQDALSSFPDGS 434

Query: 181 E 183
           E
Sbjct: 435 E 435


>tr|B4FA71|B4FA71_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 423

 Score = 87.0 bits (214), Expect = 6e-16
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +1

Query: 1   LFMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGS 180
           LFMNSKV+F  VRKDA      PV +H+NYHPDK DRM A++E++V+GK +AL+RFPDGS
Sbjct: 363 LFMNSKVLFKTVRKDAYLRNLKPVVVHLNYHPDKSDRMKAVIEFYVNGKQNALERFPDGS 422

Query: 181 E 183
           E
Sbjct: 423 E 423


>tr|Q6ZIQ4|Q6ZIQ4_ORYSJ Putative uncharacterized protein
           OJ1047_C01.5 OS=Oryza sativa subsp. japonica
           GN=OJ1047_C01.5 PE=4 SV=1
          Length = 426

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 4   FMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGSE 183
           FMNSKV+F  VRKDAN  K  PV +H+NYHPDK +RM A++E++V+GK +AL+ FPDGSE
Sbjct: 367 FMNSKVLFKTVRKDANLRKLKPVIVHLNYHPDKSERMKAVIEFYVNGKQNALEHFPDGSE 426


>tr|Q0D524|Q0D524_ORYSJ Os07g0587100 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0587100 PE=4 SV=1
          Length = 458

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = +1

Query: 4   FMNSKVMFTLVRKDANFDKFLPVALHVNYHPDKYDRMLALVEYFVDGKNDALKRFPDGSE 183
           FMNSKV+F  VRKDAN  K  PV +H+NYHPDK +RM A++E++V+GK +AL+ FPDGSE
Sbjct: 399 FMNSKVLFKTVRKDANLRKLKPVIVHLNYHPDKSERMKAVIEFYVNGKQNALEHFPDGSE 458