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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913642
Clone id YMU001_000032_F01
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCGTATATGCATCATAAGTGCCAACAAATAGCAATTGATG
ACTTAGTCGACAGTGATGCCCCGACACTCGAAAAGCTAGACATAGTGTAGATCCAAAAGA
TAAATTTGTGCTTGGTTGATGTGAATGTGGAGGGCACTTAGACCTTGTGTGTTGTCATAC
ATTGTCATCTAAAAAATAGTTATAGTGGTGGTTGATGCACAAGTGTATTAAAGAGGTATA
AAAGCTCACATGAGAATCATAGGCATTTGCCCACATTTGTCTTCCTTGTGAAGGGAAGGA
GAACAATGGTTCCTTCAATTGACGCACATGTAACAGCGGCAACACATAGGTCACATACTA
GTCCTTTACTAAGGACTACTTATGTAGTCCAAAAATCAATGCTTCACATCCAAGAGTCAA
ATGTATACTTAATCCTCTTCTTCACTAAGTTGGCTTGTTTTAAAGACGAAGGGTTTTAAG
CATGCCCACTATGGACCATGGTTCAACCCTTGGAACATGTGGCTGTGGGTGTGTGGACAC
AATCCCATTAAACTATCGCATCAGATTGCAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9RPY1
Definition sp|Q9RPY1|VIRB4_BRUSU Type IV secretion system protein virB4 OS=Brucella suis
Align length 70
Score (bit) 33.9
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913642|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_F01.
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9RPY1|VIRB4_BRUSU Type IV secretion system protein virB4 OS=...    34   0.60 
sp|Q8YDZ4|VIRB4_BRUME Type IV secretion system protein virB4 OS=...    34   0.60 
sp|P0C525|VIRB4_BRUAB Type IV secretion system protein virB4 OS=...    34   0.60 
sp|Q2YIT8|VIRB4_BRUA2 Type IV secretion system protein virB4 OS=...    34   0.60 
sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus pleuropn...    31   5.1  

>sp|Q9RPY1|VIRB4_BRUSU Type IV secretion system protein virB4
           OS=Brucella suis GN=virB4 PE=2 SV=2
          Length = 831

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>sp|Q8YDZ4|VIRB4_BRUME Type IV secretion system protein virB4
           OS=Brucella melitensis GN=virB4 PE=3 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQKLAIRK 160


>sp|P0C525|VIRB4_BRUAB Type IV secretion system protein virB4
           OS=Brucella abortus GN=virB4 PE=3 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>sp|Q2YIT8|VIRB4_BRUA2 Type IV secretion system protein virB4
           OS=Brucella abortus (strain 2308) GN=virB4 PE=3 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus
           pleuropneumoniae serotype 5b (strain L20) GN=rnb PE=3
           SV=1
          Length = 658

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 312 PSIDAHVTAATHRSHTSPLLRTTYVVQKSMLHIQESNVYLILFFTKLACFKDEGF*ACPL 491
           PSI   + A TH+  T  L    +VV +   H    + +L    T+  C  D+ F   P 
Sbjct: 104 PSIKNIIPANTHKKVTETLESGDWVVAQLKTHPLRDDRFLFAQVTQFICKADDNF--APW 161

Query: 492 WTMV----QPLEHVA 524
           W  +    QP E VA
Sbjct: 162 WVTLARHEQPREPVA 176
tr_hit_id B2SCN3
Definition tr|B2SCN3|B2SCN3_BRUA1 Type IV secretion system protein VirB4 OS=Brucella abortus (strain S19)
Align length 70
Score (bit) 33.9
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913642|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_F01.
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2SCN3|B2SCN3_BRUA1 Type IV secretion system protein VirB4 OS...    34   6.7  
tr|A9WX94|A9WX94_BRUSI Type IV secretion/conjugal transfer ATPas...    34   6.7  
tr|A9MDI3|A9MDI3_BRUC2 Type IV secretion/conjugal transfer ATPas...    34   6.7  
tr|A5VTI6|A5VTI6_BRUO2 Type IV secretion system protein VirB4 OS...    34   6.7  
tr|Q0GK36|Q0GK36_BRUOV VirB4 (Fragment) OS=Brucella ovis GN=virB...    34   6.7  

>tr|B2SCN3|B2SCN3_BRUA1 Type IV secretion system protein VirB4
           OS=Brucella abortus (strain S19) GN=BAbS19_II00600 PE=4
           SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>tr|A9WX94|A9WX94_BRUSI Type IV secretion/conjugal transfer ATPase,
           VirB4 family OS=Brucella suis (strain ATCC 23445 / NCTC
           10510) GN=BSUIS_B0070 PE=4 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>tr|A9MDI3|A9MDI3_BRUC2 Type IV secretion/conjugal transfer ATPase,
           VirB4 family OS=Brucella canis (strain ATCC 23365 / NCTC
           10854) GN=BCAN_B0069 PE=4 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>tr|A5VTI6|A5VTI6_BRUO2 Type IV secretion system protein VirB4
           OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC
           10512) GN=BOV_A0060 PE=4 SV=1
          Length = 831

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160


>tr|Q0GK36|Q0GK36_BRUOV VirB4 (Fragment) OS=Brucella ovis GN=virB4
           PE=4 SV=1
          Length = 179

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 186 HLKNSYSGG*CTSVLKRYKSSHENHRHLPTFVFLVKGRRTMVPSIDAHVTAATHRSHTSP 365
           HLK+ +S   C ++ K+Y  S   +R +   ++L    R +   I      A HRSH   
Sbjct: 91  HLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEI 150

Query: 366 LLRTTYVVQK 395
           L      ++K
Sbjct: 151 LQEQQLAIRK 160