BP913650
Clone id YMU001_000032_G01
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTGGGAGATGATTTAGGGGGTGGGTGAGATGATTGAGGCACTGAGTGAGCACTGTTAATA
GTGGTAAGATATTTCACATCCCCCCATAGCGGTGAACACCGCAAGCAGTAGGCACAAGTG
ACAAATTTCGACATGCTGTAGTTTGGGTCGTAGCAAGTACCGATTTGGTGAGGAAATCTG
CCCAATTGTGAGCAGTGGGCACATATTGCAACTTTAAAAAACCATTGGCGACCAATTCCT
TGATGAAGTGATAACTGATTTTGATGTGCTTTAGTTTGTCGGAGAAACTTGGGGAAGCAG
CCAGAGCAATTGCAGATTGGTTGTCGCAGTAGAGGGTTATGGCTTCTTCCGAGATAGGAT
ATGGAAGTTGAAATTCGTGAATGAGCTCAGAAA
■■Homology search results ■■ -
sp_hit_id P04146
Definition sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
Align length 66
Score (bit) 60.8
E-value 2.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913650|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_G01.
(393 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 61 2e-09
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 55 1e-07
sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11... 33 0.44
sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=N... 33 0.58
sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=N... 33 0.58
sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mu... 30 3.8
sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Ho... 30 3.8
sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=... 30 4.9
sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio GN=... 29 6.4
sp|P39933|TF3A_YEAST Transcription factor IIIA OS=Saccharomyces ... 29 6.4
sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1 29 6.4
sp|P83742|IGW1_HETFR IgW chain C region, secreted form 1/3 (Frag... 29 8.4
sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=P... 29 8.4
sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=H... 29 8.4

>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
PE=1 SV=3
Length = 1409

Score = 60.8 bits (146), Expect = 2e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = -3

Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170
E I +Y DNQ I++A +PS + KHI I YHF +E V N + L+Y+PT + AD
Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1382

Query: 169 TKSVLA 152
TK + A
Sbjct: 1383 TKPLPA 1388


>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 55.1 bits (131), Expect = 1e-07
Identities = 28/78 (35%), Positives = 47/78 (60%)
Frame = -3

Query: 355 ISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWAD 176
+ ++ +YCD+QSAI L+ + + + KHI + YH+I+E+V + LK+ + T N AD
Sbjct: 1246 LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPAD 1305

Query: 175 FLTKSVLATTQTTACRNL 122
LTK V+ + C+ L
Sbjct: 1306 MLTK-VVPRNKFELCKEL 1322


>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170
OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
Length = 1095

Score = 33.1 bits (74), Expect = 0.44
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = -3

Query: 388 ELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISY 251
++ H +Q+ YP +EA+T++C + +SP SD LKH+ I +
Sbjct: 334 DINHMYQVAYPSKQEALTIFCQHAFK---QSSP--SDDLKHLAIEF 374


>sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=Nipbl
PE=1 SV=1
Length = 2798

Score = 32.7 bits (73), Expect = 0.58
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3

Query: 244 IKELVANGFLKLQYVPTAHNWADFLTKSVLATTQ-TTACRN 125
IK+LV F KL + PT HN + +T+ +L T ACR+
Sbjct: 1896 IKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVVAACRD 1936


>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL
PE=1 SV=2
Length = 2804

Score = 32.7 bits (73), Expect = 0.58
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3

Query: 244 IKELVANGFLKLQYVPTAHNWADFLTKSVLATTQ-TTACRN 125
IK+LV F KL + PT HN + +T+ +L T ACR+
Sbjct: 1902 IKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVVAACRD 1942


>sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mus
musculus GN=Mll PE=2 SV=2
Length = 3966

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -2

Query: 242 QGIGRQWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYCLR 99
+G QW ++C C++L G F CYD + SK + C C R
Sbjct: 1542 KGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDR 1592


>sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Homo
sapiens GN=MLL PE=1 SV=5
Length = 3969

Score = 30.0 bits (66), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -2

Query: 242 QGIGRQWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYCLR 99
+G QW ++C C++L G F CYD + SK + C C R
Sbjct: 1543 KGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDR 1593


>sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=Homo
sapiens GN=WBP7 PE=1 SV=1
Length = 2715

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2

Query: 227 QWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYC 105
+W ++C C+QL G + CY+ N SK + CA C
Sbjct: 1317 EWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQC 1360


>sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio
GN=znf423 PE=2 SV=1
Length = 1365

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2

Query: 197 HCSQLGRFPHQIGTCYDPNYSMSKFVTCAYCLRCSPLWGDVKYLT 63
HCS +G P+ S + +C YC SP++G + LT
Sbjct: 578 HCSSVGGVTKMESPVLQPSQSFMEVYSCPYCTN-SPIFGSLLKLT 621


>sp|P39933|TF3A_YEAST Transcription factor IIIA OS=Saccharomyces
cerevisiae GN=TFC2 PE=1 SV=1
Length = 429

Score = 29.3 bits (64), Expect = 6.4
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -2

Query: 386 AHSRISTSISYLGRSHNPLLRQP---ICNCSGCFPKFLRQTKAHQNQLSLHQGIGRQWFF 216
+ S S S++ L + + +P C+ GC F R + ++QLS+HQG+
Sbjct: 24 SRSESSESLNSLTSTRSSSSNRPKTYFCDYDGCDKAFTRPSILTEHQLSVHQGL------ 77

Query: 215 KVAICAHCSQ-LGRFPHQIGTCYDPNYSMSKFVTCAYC 105
+ C C++ + H Y +S +K C+YC
Sbjct: 78 RAFQCDKCAKSFVKKSHLERHLY--THSDTKPFQCSYC 113


tr_hit_id Q6BCY1
Definition tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas
Align length 75
Score (bit) 74.3
E-value 3.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913650|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_G01.
(393 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE... 74 3e-12
tr|Q1S5J6|Q1S5J6_MEDTR Reverse transcriptase (RNA-dependent DNA ... 73 8e-12
tr|A5C8R2|A5C8R2_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 71 3e-11
tr|B2KZG9|B2KZG9_PICAB Putative gag-pol polyprotein (Fragment) O... 71 3e-11
tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,... 70 4e-11
tr|A5AUI8|A5AUI8_VITVI Putative uncharacterized protein OS=Vitis... 70 5e-11
tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein OS=Copri... 70 5e-11
tr|A5C243|A5C243_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5BFQ4|A5BFQ4_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5B6M3|A5B6M3_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5B5Q6|A5B5Q6_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5AQS6|A5AQS6_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5AP66|A5AP66_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5ALJ9|A5ALJ9_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|A5AIB3|A5AIB3_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10
tr|A5CA30|A5CA30_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5B5H3|A5B5H3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5B4V9|A5B4V9_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5AYC4|A5AYC4_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5ANL3|A5ANL3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5C6J6|A5C6J6_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5B9K4|A5B9K4_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5B8G1|A5B8G1_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5AQ21|A5AQ21_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5AH86|A5AH86_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5C5R8|A5C5R8_VITVI Putative uncharacterized protein OS=Vitis... 67 3e-10

>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4
SV=1
Length = 1298

Score = 74.3 bits (181), Expect = 3e-12
Identities = 35/75 (46%), Positives = 53/75 (70%)
Frame = -3

Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170
+E ++L+CD+QSA+ LA +P+F + KHI++ YHFI+E V G + LQ + TA N ADFL
Sbjct: 1218 QEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFL 1277

Query: 169 TKSVLATTQTTACRN 125
TK ++ + T CR+
Sbjct: 1278 TK-IINVDKFTWCRS 1291


>tr|Q1S5J6|Q1S5J6_MEDTR Reverse transcriptase (RNA-dependent DNA
polymerase), putative OS=Medicago truncatula
GN=MtrDRAFT_AC147431g15v2 PE=4 SV=1
Length = 1654

Score = 72.8 bits (177), Expect = 8e-12
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = -3

Query: 361 YPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNW 182
Y I+ +I +YCDN +AI L+ +P + KHI+I +HFI++ V G L LQ++ T H W
Sbjct: 1568 YQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDLQFIDTEHQW 1627

Query: 181 ADFLTKSVLATTQTTACRNLSL 116
AD TK + +NL++
Sbjct: 1628 ADIFTKPLSVERFDFIKKNLNM 1649


>tr|A5C8R2|A5C8R2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_023983 PE=4 SV=1
Length = 590

Score = 72.0 bits (175), Expect = 1e-11
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = -3

Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170
EE + ++CDNQSAI++A +P D+ KH++I HFIKE + G +K+ YVPT AD L
Sbjct: 506 EEPMKMFCDNQSAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGIIKMLYVPTCFQTADIL 565

Query: 169 TKSV 158
TK++
Sbjct: 566 TKAL 569


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 70.9 bits (172), Expect = 3e-11
Identities = 33/76 (43%), Positives = 52/76 (68%)
Frame = -3

Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170
+E IT+YCD+QSA+ +A +P+F + KHI + YHF++E+V G + +Q + T N AD +
Sbjct: 1225 QEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAM 1284

Query: 169 TKSVLATTQTTACRNL 122
TKS+ T + CR+L
Sbjct: 1285 TKSI-NTDKFIWCRSL 1299


>tr|B2KZG9|B2KZG9_PICAB Putative gag-pol polyprotein (Fragment)
OS=Picea abies GN=CCHC PE=2 SV=1
Length = 144

Score = 70.9 bits (172), Expect = 3e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = -3

Query: 367 LPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAH 188
L YP + +YCDNQS I L +P F D+ KHI I YH I++ V G +KL++VPT
Sbjct: 50 LAYPEIVDPTVIYCDNQSCIKLTENPVFHDRSKHIDIRYHSIRDYVQRGIVKLEFVPTDE 109

Query: 187 NWADFLTKSV 158
AD LTK++
Sbjct: 110 QVADILTKAL 119


>tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,
CCHC-type; Peptidase aspartic, catalytic OS=Medicago
truncatula GN=MtrDRAFT_AC149577g2v1 PE=4 SV=1
Length = 1715

Score = 70.5 bits (171), Expect = 4e-11
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = -3

Query: 361 YPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNW 182
Y I+ +I +YCDN + I L+ +P + KHI+I +HFI++ V G L +Q++ T H W
Sbjct: 1629 YQINANSIPIYCDNTAVICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQW 1688

Query: 181 ADFLTKSVLATTQTTACRNLSL 116
AD TK + +NL++
Sbjct: 1689 ADIFTKPLSVERFDFIKKNLNM 1710


>tr|A5AUI8|A5AUI8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_034973 PE=4 SV=1
Length = 1049

Score = 70.1 bits (170), Expect = 5e-11
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = -3

Query: 352 SEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADF 173
S I + CDNQ+AI++A +P D+ KH++I HFI E V N +KL YVPT H AD
Sbjct: 964 SSSPILMMCDNQAAISIAKNPVHHDRTKHVEIDRHFITEKVTNEMVKLNYVPTKHQTADI 1023

Query: 172 LTKSV 158
LTK++
Sbjct: 1024 LTKAL 1028


>tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_09540 PE=4 SV=1
Length = 988

Score = 70.1 bits (170), Expect = 5e-11
Identities = 37/95 (38%), Positives = 50/95 (52%)
Frame = -3

Query: 385 LIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQ 206
L E LP P T++ DNQ+AIA++ P F + KHI IS HF+++LV +G L
Sbjct: 891 LFDELGLPQP---STTTIFTDNQAAIAISRHPEFHARTKHIDISLHFLRDLVNSGKLNTV 947

Query: 205 YVPTAHNWADFLTKSVLATTQTTACRNLSLVPTAC 101
Y+ T N AD TK + T L L+P C
Sbjct: 948 YINTLDNLADIFTKGLTRTAHNDFTYRLGLLPLGC 982


>tr|A5C243|A5C243_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_019561 PE=4 SV=1
Length = 692

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = -3

Query: 391 SELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLK 212
+ L+ E ++P + + LYCDNQ+AI++A +P D+ KH++I HFIKE + G K
Sbjct: 597 NRLLEELRVPL---KHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFK 653

Query: 211 LQYVPTAHNWADFLTKSV 158
+ Y PT AD LTK++
Sbjct: 654 VSYTPTNCQTADILTKAL 671


>tr|A5BFQ4|A5BFQ4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_020105 PE=4 SV=1
Length = 642

Score = 68.6 bits (166), Expect = 2e-10
Identities = 32/78 (41%), Positives = 49/78 (62%)
Frame = -3

Query: 391 SELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLK 212
+ L+ E ++P + + LYCDNQ+AI++A +P D+ KH++I HFIKE + G K
Sbjct: 547 NRLLEELRVPL---KHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFK 603

Query: 211 LQYVPTAHNWADFLTKSV 158
+ Y PT AD LTK++
Sbjct: 604 VSYTPTNCQTADILTKAL 621