BP913650 |
Clone id |
YMU001_000032_G01 |
Library |
YMU01 |
Length |
393 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000032_G01. |
Accession |
BP913650 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTGGGAGATGATTTAGGGGGTGGGTGAGATGATTGAGGCACTGAGTGAGCACTGTTAATA GTGGTAAGATATTTCACATCCCCCCATAGCGGTGAACACCGCAAGCAGTAGGCACAAGTG ACAAATTTCGACATGCTGTAGTTTGGGTCGTAGCAAGTACCGATTTGGTGAGGAAATCTG CCCAATTGTGAGCAGTGGGCACATATTGCAACTTTAAAAAACCATTGGCGACCAATTCCT TGATGAAGTGATAACTGATTTTGATGTGCTTTAGTTTGTCGGAGAAACTTGGGGAAGCAG CCAGAGCAATTGCAGATTGGTTGTCGCAGTAGAGGGTTATGGCTTCTTCCGAGATAGGAT ATGGAAGTTGAAATTCGTGAATGAGCTCAGAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P04146 |
Definition |
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster |
Align length |
66 |
Score (bit) |
60.8 |
E-value |
2.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913650|Adiantum capillus-veneris mRNA, clone: YMU001_000032_G01. (393 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 61 2e-09 sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 55 1e-07 sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11... 33 0.44 sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=N... 33 0.58 sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=N... 33 0.58 sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mu... 30 3.8 sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Ho... 30 3.8 sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=... 30 4.9 sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio GN=... 29 6.4 sp|P39933|TF3A_YEAST Transcription factor IIIA OS=Saccharomyces ... 29 6.4 sp|O60711|LPXN_HUMAN Leupaxin OS=Homo sapiens GN=LPXN PE=1 SV=1 29 6.4 sp|P83742|IGW1_HETFR IgW chain C region, secreted form 1/3 (Frag... 29 8.4 sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=P... 29 8.4 sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=H... 29 8.4
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/66 (43%), Positives = 40/66 (60%) Frame = -3
Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170 E I +Y DNQ I++A +PS + KHI I YHF +E V N + L+Y+PT + AD Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1382
Query: 169 TKSVLA 152 TK + A Sbjct: 1383 TKPLPA 1388
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 Length = 1328
Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/78 (35%), Positives = 47/78 (60%) Frame = -3
Query: 355 ISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWAD 176 + ++ +YCD+QSAI L+ + + + KHI + YH+I+E+V + LK+ + T N AD Sbjct: 1246 LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPAD 1305
Query: 175 FLTKSVLATTQTTACRNL 122 LTK V+ + C+ L Sbjct: 1306 MLTK-VVPRNKFELCKEL 1322
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Length = 1095
Score = 33.1 bits (74), Expect = 0.44 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = -3
Query: 388 ELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISY 251 ++ H +Q+ YP +EA+T++C + +SP SD LKH+ I + Sbjct: 334 DINHMYQVAYPSKQEALTIFCQHAFK---QSSP--SDDLKHLAIEF 374
>sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1 Length = 2798
Score = 32.7 bits (73), Expect = 0.58 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -3
Query: 244 IKELVANGFLKLQYVPTAHNWADFLTKSVLATTQ-TTACRN 125 IK+LV F KL + PT HN + +T+ +L T ACR+ Sbjct: 1896 IKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVVAACRD 1936
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2 Length = 2804
Score = 32.7 bits (73), Expect = 0.58 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -3
Query: 244 IKELVANGFLKLQYVPTAHNWADFLTKSVLATTQ-TTACRN 125 IK+LV F KL + PT HN + +T+ +L T ACR+ Sbjct: 1902 IKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVVAACRD 1942
>sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mus musculus GN=Mll PE=2 SV=2 Length = 3966
Score = 30.0 bits (66), Expect = 3.8 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = -2
Query: 242 QGIGRQWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYCLR 99 +G QW ++C C++L G F CYD + SK + C C R Sbjct: 1542 KGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDR 1592
>sp|Q03164|HRX_HUMAN Histone-lysine N-methyltransferase HRX OS=Homo sapiens GN=MLL PE=1 SV=5 Length = 3969
Score = 30.0 bits (66), Expect = 3.8 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = -2
Query: 242 QGIGRQWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYCLR 99 +G QW ++C C++L G F CYD + SK + C C R Sbjct: 1543 KGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDR 1593
>sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=Homo sapiens GN=WBP7 PE=1 SV=1 Length = 2715
Score = 29.6 bits (65), Expect = 4.9 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -2
Query: 227 QWFFKVAICAHCSQL---GRFPHQIGTCYDPNYSMSKFVTCAYC 105 +W ++C C+QL G + CY+ N SK + CA C Sbjct: 1317 EWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQC 1360
>sp|A1L1R6|ZN423_DANRE Zinc finger protein 423 OS=Danio rerio GN=znf423 PE=2 SV=1 Length = 1365
Score = 29.3 bits (64), Expect = 6.4 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2
Query: 197 HCSQLGRFPHQIGTCYDPNYSMSKFVTCAYCLRCSPLWGDVKYLT 63 HCS +G P+ S + +C YC SP++G + LT Sbjct: 578 HCSSVGGVTKMESPVLQPSQSFMEVYSCPYCTN-SPIFGSLLKLT 621
>sp|P39933|TF3A_YEAST Transcription factor IIIA OS=Saccharomyces cerevisiae GN=TFC2 PE=1 SV=1 Length = 429
Score = 29.3 bits (64), Expect = 6.4 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Frame = -2
Query: 386 AHSRISTSISYLGRSHNPLLRQP---ICNCSGCFPKFLRQTKAHQNQLSLHQGIGRQWFF 216 + S S S++ L + + +P C+ GC F R + ++QLS+HQG+ Sbjct: 24 SRSESSESLNSLTSTRSSSSNRPKTYFCDYDGCDKAFTRPSILTEHQLSVHQGL------ 77
Query: 215 KVAICAHCSQ-LGRFPHQIGTCYDPNYSMSKFVTCAYC 105 + C C++ + H Y +S +K C+YC Sbjct: 78 RAFQCDKCAKSFVKKSHLERHLY--THSDTKPFQCSYC 113
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6BCY1 |
Definition |
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas |
Align length |
75 |
Score (bit) |
74.3 |
E-value |
3.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913650|Adiantum capillus-veneris mRNA, clone: YMU001_000032_G01. (393 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE... 74 3e-12 tr|Q1S5J6|Q1S5J6_MEDTR Reverse transcriptase (RNA-dependent DNA ... 73 8e-12 tr|A5C8R2|A5C8R2_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 71 3e-11 tr|B2KZG9|B2KZG9_PICAB Putative gag-pol polyprotein (Fragment) O... 71 3e-11 tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger,... 70 4e-11 tr|A5AUI8|A5AUI8_VITVI Putative uncharacterized protein OS=Vitis... 70 5e-11 tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein OS=Copri... 70 5e-11 tr|A5C243|A5C243_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5BFQ4|A5BFQ4_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5B6M3|A5B6M3_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5B5Q6|A5B5Q6_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5AQS6|A5AQS6_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5AP66|A5AP66_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5ALJ9|A5ALJ9_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A5AIB3|A5AIB3_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 68 2e-10 tr|A5CA30|A5CA30_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10 tr|A5B5H3|A5B5H3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10 tr|A5B4V9|A5B4V9_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10 tr|A5AYC4|A5AYC4_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10 tr|A5ANL3|A5ANL3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10 tr|A5C6J6|A5C6J6_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5B9K4|A5B9K4_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5B8G1|A5B8G1_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5AQ21|A5AQ21_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5AH86|A5AH86_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5C5R8|A5C5R8_VITVI Putative uncharacterized protein OS=Vitis... 67 3e-10
>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4 SV=1 Length = 1298
Score = 74.3 bits (181), Expect = 3e-12 Identities = 35/75 (46%), Positives = 53/75 (70%) Frame = -3
Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170 +E ++L+CD+QSA+ LA +P+F + KHI++ YHFI+E V G + LQ + TA N ADFL Sbjct: 1218 QEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFL 1277
Query: 169 TKSVLATTQTTACRN 125 TK ++ + T CR+ Sbjct: 1278 TK-IINVDKFTWCRS 1291
>tr|Q1S5J6|Q1S5J6_MEDTR Reverse transcriptase (RNA-dependent DNA polymerase), putative OS=Medicago truncatula GN=MtrDRAFT_AC147431g15v2 PE=4 SV=1 Length = 1654
Score = 72.8 bits (177), Expect = 8e-12 Identities = 32/82 (39%), Positives = 49/82 (59%) Frame = -3
Query: 361 YPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNW 182 Y I+ +I +YCDN +AI L+ +P + KHI+I +HFI++ V G L LQ++ T H W Sbjct: 1568 YQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDLQFIDTEHQW 1627
Query: 181 ADFLTKSVLATTQTTACRNLSL 116 AD TK + +NL++ Sbjct: 1628 ADIFTKPLSVERFDFIKKNLNM 1649
>tr|A5C8R2|A5C8R2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023983 PE=4 SV=1 Length = 590
Score = 72.0 bits (175), Expect = 1e-11 Identities = 31/64 (48%), Positives = 45/64 (70%) Frame = -3
Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170 EE + ++CDNQSAI++A +P D+ KH++I HFIKE + G +K+ YVPT AD L Sbjct: 506 EEPMKMFCDNQSAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGIIKMLYVPTCFQTADIL 565
Query: 169 TKSV 158 TK++ Sbjct: 566 TKAL 569
>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 70.9 bits (172), Expect = 3e-11 Identities = 33/76 (43%), Positives = 52/76 (68%) Frame = -3
Query: 349 EEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADFL 170 +E IT+YCD+QSA+ +A +P+F + KHI + YHF++E+V G + +Q + T N AD + Sbjct: 1225 QEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAM 1284
Query: 169 TKSVLATTQTTACRNL 122 TKS+ T + CR+L Sbjct: 1285 TKSI-NTDKFIWCRSL 1299
>tr|B2KZG9|B2KZG9_PICAB Putative gag-pol polyprotein (Fragment) OS=Picea abies GN=CCHC PE=2 SV=1 Length = 144
Score = 70.9 bits (172), Expect = 3e-11 Identities = 33/70 (47%), Positives = 44/70 (62%) Frame = -3
Query: 367 LPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAH 188 L YP + +YCDNQS I L +P F D+ KHI I YH I++ V G +KL++VPT Sbjct: 50 LAYPEIVDPTVIYCDNQSCIKLTENPVFHDRSKHIDIRYHSIRDYVQRGIVKLEFVPTDE 109
Query: 187 NWADFLTKSV 158 AD LTK++ Sbjct: 110 QVADILTKAL 119
>tr|Q2HU05|Q2HU05_MEDTR Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic OS=Medicago truncatula GN=MtrDRAFT_AC149577g2v1 PE=4 SV=1 Length = 1715
Score = 70.5 bits (171), Expect = 4e-11 Identities = 30/82 (36%), Positives = 48/82 (58%) Frame = -3
Query: 361 YPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNW 182 Y I+ +I +YCDN + I L+ +P + KHI+I +HFI++ V G L +Q++ T H W Sbjct: 1629 YQINANSIPIYCDNTAVICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQW 1688
Query: 181 ADFLTKSVLATTQTTACRNLSL 116 AD TK + +NL++ Sbjct: 1689 ADIFTKPLSVERFDFIKKNLNM 1710
>tr|A5AUI8|A5AUI8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034973 PE=4 SV=1 Length = 1049
Score = 70.1 bits (170), Expect = 5e-11 Identities = 32/65 (49%), Positives = 43/65 (66%) Frame = -3
Query: 352 SEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQYVPTAHNWADF 173 S I + CDNQ+AI++A +P D+ KH++I HFI E V N +KL YVPT H AD Sbjct: 964 SSSPILMMCDNQAAISIAKNPVHHDRTKHVEIDRHFITEKVTNEMVKLNYVPTKHQTADI 1023
Query: 172 LTKSV 158 LTK++ Sbjct: 1024 LTKAL 1028
>tr|A8P0X5|A8P0X5_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_09540 PE=4 SV=1 Length = 988
Score = 70.1 bits (170), Expect = 5e-11 Identities = 37/95 (38%), Positives = 50/95 (52%) Frame = -3
Query: 385 LIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLKLQ 206 L E LP P T++ DNQ+AIA++ P F + KHI IS HF+++LV +G L Sbjct: 891 LFDELGLPQP---STTTIFTDNQAAIAISRHPEFHARTKHIDISLHFLRDLVNSGKLNTV 947
Query: 205 YVPTAHNWADFLTKSVLATTQTTACRNLSLVPTAC 101 Y+ T N AD TK + T L L+P C Sbjct: 948 YINTLDNLADIFTKGLTRTAHNDFTYRLGLLPLGC 982
>tr|A5C243|A5C243_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019561 PE=4 SV=1 Length = 692
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/78 (41%), Positives = 49/78 (62%) Frame = -3
Query: 391 SELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLK 212 + L+ E ++P + + LYCDNQ+AI++A +P D+ KH++I HFIKE + G K Sbjct: 597 NRLLEELRVPL---KHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFK 653
Query: 211 LQYVPTAHNWADFLTKSV 158 + Y PT AD LTK++ Sbjct: 654 VSYTPTNCQTADILTKAL 671
>tr|A5BFQ4|A5BFQ4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020105 PE=4 SV=1 Length = 642
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/78 (41%), Positives = 49/78 (62%) Frame = -3
Query: 391 SELIHEFQLPYPISEEAITLYCDNQSAIALAASPSFSDKLKHIKISYHFIKELVANGFLK 212 + L+ E ++P + + LYCDNQ+AI++A +P D+ KH++I HFIKE + G K Sbjct: 547 NRLLEELRVPL---KHPMVLYCDNQAAISIAKNPVHHDRTKHVEIDRHFIKEKIEEGVFK 603
Query: 211 LQYVPTAHNWADFLTKSV 158 + Y PT AD LTK++ Sbjct: 604 VSYTPTNCQTADILTKAL 621
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