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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913651
Clone id YMU001_000032_G02
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACAAAATCAGGCAGTATTATTCACACAAAAAAACGCTGCAGCCTTCTCTCTAACTACCA
AGTTGATAACTCTATGAATATAAAGAATTGAGCTTGCATCAAAAATCTTAAGACCACAGA
ATCCCCTCCAAAGGCACAACAATATCACTGCACGTGATGATAAAAAACTGTGCAGATTCA
TGCCACTGCAGCTCACATGTTCAAGTGCAGCCAACTACATACCTTGTTTTTTGCTGCATT
GCAACCAAGGCTCCAAGTTCCCTTAAAGTCTATATAAGGGCTCCCATACTGCCATCTCCA
CAATAATACACACAAGCCAAAAATACCCTCGTCCTGTCACAACTTTAGATACTTATCCAC
GTATCCCTGGACTAATTTGGAGATCTTGGGGCGAGATGTCCTCATATATTGATCCACCTT
CTCCTGAGATTTGGGAATGTGATGGCTTGGTAAATTGCCAATGACCTTCTCGACTGCCTT
CTTTGCAATCGTCTTGAAAGCCTCTTTACTCATATACCTTCCTTCCAAGTTGGCTTCAGC
ACCTCTTTTACATGATCAGCGATGGC
■■Homology search results ■■ -
sp_hit_id Q6YYC0
Definition sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 56.2
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913651|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_G02.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein...    56   1e-11
sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein...    57   8e-11
sp|Q7ZW00|AGK_DANRE Acylglycerol kinase, mitochondrial OS=Danio ...    30   6.4  
sp|Q5UQQ9|YR854_MIMIV Putative transposase R854 OS=Acanthamoeba ...    30   8.3  

>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55
            OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1
          Length = 958

 Score = 56.2 bits (134), Expect(2) = 1e-11
 Identities = 29/57 (50%), Positives = 39/57 (68%)
 Frame = -3

Query: 513  MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLK 343
            MS+E  KTI KK V+KV   +   + P+++EK+D YM  SR K++KLVQ YV KY K
Sbjct: 902  MSREVHKTIVKKVVDKVTTTV--ENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956



 Score = 33.1 bits (74), Expect(2) = 1e-11
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+AD VK+ LKPTWKEG
Sbjct: 884 ALADFVKDALKPTWKEG 900


>sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein 36
           OS=Oryza sativa subsp. japonica GN=Os05g0497500 PE=2
           SV=1
          Length = 703

 Score = 56.6 bits (135), Expect(2) = 8e-11
 Identities = 24/55 (43%), Positives = 39/55 (70%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKY 349
           +SKEA K I KK+V+K+  +L  + +P++++ +  Y+  S PKI KLV+ YVD+Y
Sbjct: 646 LSKEAHKLIVKKSVDKIFASLEPNQMPETEKAITTYITASAPKIEKLVKAYVDRY 700



 Score = 30.0 bits (66), Expect(2) = 8e-11
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 563 IADHVKEVLKPTWKEG 516
           + +HVKE++KP WKEG
Sbjct: 629 LVEHVKELVKPIWKEG 644


>sp|Q7ZW00|AGK_DANRE Acylglycerol kinase, mitochondrial OS=Danio
           rerio GN=agk PE=2 SV=2
          Length = 422

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
 Frame = +3

Query: 327 PRPVTTLDTYPRIPGLIWRSWGEMSSYIDP--------PSPEIWE 437
           PRP    D  P+ P L++R +  + +Y +P        P PE WE
Sbjct: 262 PRPPDLPDEIPQRPNLLYRIYRRLQNYWNPPLEEPPKEPEPEQWE 306


>sp|Q5UQQ9|YR854_MIMIV Putative transposase R854 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R854 PE=3 SV=1
          Length = 527

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 507 KEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKL 373
           K+  K   KK V+KVI    S HIP    K+ +++ T + + +++
Sbjct: 42  KKPLKKTTKKTVKKVINRPKSIHIPNKDLKIFKWIPTPKKEFTEI 86
tr_hit_id A9NXI7
Definition tr|A9NXI7|A9NXI7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 59
Score (bit) 80.5
E-value 8.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913651|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_G02.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NXI7|A9NXI7_PICSI Putative uncharacterized protein OS=Picea...    80   8e-17
tr|Q10Q04|Q10Q04_ORYSJ Os03g0214900 protein OS=Oryza sativa subs...    76   2e-16
tr|A7QHZ5|A7QHZ5_VITVI Chromosome chr17 scaffold_101, whole geno...    77   2e-16
tr|B8AQT1|B8AQT1_ORYSI Putative uncharacterized protein OS=Oryza...    76   2e-16
tr|A5BL82|A5BL82_VITVI Putative uncharacterized protein OS=Vitis...    75   7e-16
tr|A9RJZ2|A9RJZ2_PHYPA Predicted protein OS=Physcomitrella paten...    69   7e-15
tr|A9TJR0|A9TJR0_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   6e-14
tr|A7NSJ8|A7NSJ8_VITVI Chromosome chr18 scaffold_1, whole genome...    65   5e-13
tr|A3AFG7|A3AFG7_ORYSJ Putative uncharacterized protein OS=Oryza...    64   1e-12
tr|Q9LW25|Q9LW25_ARATH Genomic DNA, chromosome 3, P1 clone: MDJ1...    71   3e-12
tr|Q9LIH5|Q9LIH5_ARATH Genomic DNA, chromosome 3, TAC clone:K24M...    65   8e-12
tr|Q56XB6|Q56XB6_ARATH Putative uncharacterized protein At3g1864...    65   9e-12
tr|A5BTP6|A5BTP6_VITVI Putative uncharacterized protein OS=Vitis...    69   1e-11
tr|A2YR00|A2YR00_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-10
tr|A3BPF0|A3BPF0_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-10
tr|B8AZJ7|B8AZJ7_ORYSI Putative uncharacterized protein OS=Oryza...    57   9e-10
tr|B6SYE3|B6SYE3_MAIZE Zinc finger C-x8-C-x5-C-x3-H type family ...    55   3e-09
tr|Q84VG7|Q84VG7_ARATH Putative uncharacterized protein At2g3383...    55   1e-08
tr|Q7FS92|Q7FS92_SORBI Putative uncharacterized protein OS=Sorgh...    45   3e-07
tr|A7QPT4|A7QPT4_VITVI Chromosome chr10 scaffold_138, whole geno...    52   2e-05
tr|A5BEH4|A5BEH4_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|Q10I08|Q10I08_ORYSJ Expressed protein (Putative uncharacteriz...    39   0.014
tr|Q0DQR0|Q0DQR0_ORYSJ Os03g0569000 protein OS=Oryza sativa subs...    39   0.014
tr|A8JD77|A8JD77_CHLRE Predicted protein OS=Chlamydomonas reinha...    30   0.19 
tr|B4N6H9|B4N6H9_DROWI GK12319 OS=Drosophila willistoni GN=GK123...    34   6.4  
tr|A0CUN8|A0CUN8_PARTE Chromosome undetermined scaffold_28, whol...    33   8.3  

>tr|A9NXI7|A9NXI7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 488

 Score = 80.5 bits (197), Expect(2) = 8e-17
 Identities = 36/59 (61%), Positives = 50/59 (84%)
 Frame = -3

Query: 516 YMSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLKL 340
           +MSKEAFKTI KKAV+KV G + +H IPKS+ ++DQY+ +S  K++KLVQGYVDKY+++
Sbjct: 430 HMSKEAFKTIVKKAVDKVAGAMQNHQIPKSRGRIDQYVASSERKLTKLVQGYVDKYVRV 488



 Score = 30.0 bits (66), Expect(2) = 8e-17
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+A+ VKE LKP+W+EG
Sbjct: 413 ALAEFVKEALKPSWREG 429


>tr|Q10Q04|Q10Q04_ORYSJ Os03g0214900 protein OS=Oryza sativa subsp.
            japonica GN=Os03g0214900 PE=4 SV=1
          Length = 979

 Score = 76.3 bits (186), Expect(2) = 2e-16
 Identities = 33/58 (56%), Positives = 49/58 (84%)
 Frame = -3

Query: 513  MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLKL 340
            +S+EAFKTI KK V+KV  ++P++HIPK+  K+ QY+++S+ K++KLV GYVDKY+KL
Sbjct: 922  ISREAFKTIVKKTVDKVSSSVPNNHIPKTPAKIKQYVQSSQKKVTKLVMGYVDKYVKL 979



 Score = 32.7 bits (73), Expect(2) = 2e-16
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           AIAD VKEVLKP+W++G
Sbjct: 904 AIADFVKEVLKPSWRQG 920


>tr|A7QHZ5|A7QHZ5_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000033001
           PE=4 SV=1
          Length = 632

 Score = 77.0 bits (188), Expect(2) = 2e-16
 Identities = 36/57 (63%), Positives = 46/57 (80%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLK 343
           MSKEAFKTI KK V+KV G + SH IPKSQ K++ Y+ +S+ K++KLV GYVDKY+K
Sbjct: 575 MSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINHYIDSSQRKLTKLVMGYVDKYVK 631



 Score = 32.0 bits (71), Expect(2) = 2e-16
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+AD VKEVLKP+W++G
Sbjct: 557 ALADFVKEVLKPSWRQG 573


>tr|B8AQT1|B8AQT1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10522 PE=4 SV=1
          Length = 357

 Score = 76.3 bits (186), Expect(2) = 2e-16
 Identities = 33/58 (56%), Positives = 49/58 (84%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLKL 340
           +S+EAFKTI KK V+KV  ++P++HIPK+  K+ QY+++S+ K++KLV GYVDKY+KL
Sbjct: 300 ISREAFKTIVKKTVDKVSSSVPNNHIPKTPAKIKQYVQSSQKKVTKLVMGYVDKYVKL 357



 Score = 32.7 bits (73), Expect(2) = 2e-16
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           AIAD VKEVLKP+W++G
Sbjct: 282 AIADFVKEVLKPSWRQG 298


>tr|A5BL82|A5BL82_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_013331 PE=4 SV=1
          Length = 913

 Score = 75.1 bits (183), Expect(2) = 7e-16
 Identities = 32/57 (56%), Positives = 44/57 (77%)
 Frame = -3

Query: 513  MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLK 343
            MS+E  KTI KK V+KV G +   H+PK+QEK+D Y+  S+PK++KLVQ YV+K+LK
Sbjct: 856  MSREVHKTIVKKVVDKVTGTIQGEHVPKTQEKIDHYLSYSKPKLTKLVQAYVEKFLK 912



 Score = 32.3 bits (72), Expect(2) = 7e-16
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+ + VKE+LKPTWKEG
Sbjct: 838 ALVEFVKEILKPTWKEG 854


>tr|A9RJZ2|A9RJZ2_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_159541 PE=4 SV=1
          Length = 1268

 Score = 68.6 bits (166), Expect(2) = 7e-15
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = -3

Query: 513  MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLK 343
            MSKEAFKTIAKKAV+KV+  +  H +P ++EKV+ YM  +RPKISKLVQ    + +K
Sbjct: 1141 MSKEAFKTIAKKAVDKVLSAIKPHQVPTTEEKVEAYMMIARPKISKLVQFLKSRVVK 1197



 Score = 35.4 bits (80), Expect(2) = 7e-15
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -1

Query: 566  AIADHVKEVLKPTWKEG 516
            A+A+HVKE LKPTW+EG
Sbjct: 1123 AVAEHVKETLKPTWREG 1139


>tr|A9TJR0|A9TJR0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8683 PE=4 SV=1
          Length = 100

 Score = 63.9 bits (154), Expect(2) = 6e-14
 Identities = 30/49 (61%), Positives = 38/49 (77%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQ 367
           MSKEAFKTIAKKAV+KV+  +  H +P + EKV  YM  +RPKI+KLV+
Sbjct: 50  MSKEAFKTIAKKAVDKVLSVIKPHQVPNTDEKVAVYMENARPKITKLVE 98



 Score = 37.0 bits (84), Expect(2) = 6e-14
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+ADHVKE LKPTW+EG
Sbjct: 32  AVADHVKETLKPTWREG 48


>tr|A7NSJ8|A7NSJ8_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014290001
           PE=4 SV=1
          Length = 614

 Score = 65.5 bits (158), Expect(2) = 5e-13
 Identities = 28/49 (57%), Positives = 38/49 (77%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQ 367
           MS+E  KTI KK V+KV G +   H+PK+QEK+DQY+  S+PK++KLVQ
Sbjct: 524 MSREVHKTIVKKVVDKVTGTIQGEHVPKTQEKIDQYLSYSKPKLTKLVQ 572



 Score = 32.3 bits (72), Expect(2) = 5e-13
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           A+ + VKE+LKPTWKEG
Sbjct: 506 ALVEFVKEILKPTWKEG 522


>tr|A3AFG7|A3AFG7_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_009539 PE=4 SV=1
          Length = 998

 Score = 63.9 bits (154), Expect(2) = 1e-12
 Identities = 31/83 (37%), Positives = 53/83 (63%)
 Frame = -3

Query: 513  MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLKL*Q 334
            +S+EAFKTI KK V+KV  ++P++HIPK+  K+ QY+++S+ K++KLV  +  K  ++  
Sbjct: 872  ISREAFKTIVKKTVDKVSSSVPNNHIPKTPAKIKQYVQSSQKKVTKLVMSFSSKGFRV-- 929

Query: 333  DEGIFGLCVLLWRWQYGSPYIDF 265
                    ++L +W Y S   +F
Sbjct: 930  --------IVLQKWMYLSENHEF 944



 Score = 32.7 bits (73), Expect(2) = 1e-12
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -1

Query: 566 AIADHVKEVLKPTWKEG 516
           AIAD VKEVLKP+W++G
Sbjct: 854 AIADFVKEVLKPSWRQG 870


>tr|Q9LW25|Q9LW25_ARATH Genomic DNA, chromosome 3, P1 clone: MDJ14
           (At3g26850) (Putative uncharacterized protein At3g26850)
           OS=Arabidopsis thaliana GN=At3g26850 PE=2 SV=1
          Length = 265

 Score = 71.2 bits (173), Expect(2) = 3e-12
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = -3

Query: 513 MSKEAFKTIAKKAVEKVIGNLPSHHIPKSQEKVDQYMRTSRPKISKLVQGYVDKYLK 343
           MSKEAFKTI K+ V+KV  ++    IPKS+ K+D+Y+ +S+ K++KLV GYVDKY+K
Sbjct: 208 MSKEAFKTIVKRVVDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLVMGYVDKYVK 264



 Score = 23.9 bits (50), Expect(2) = 3e-12
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = -1

Query: 551 VKEVLKPTWKEG 516
           VK++LKP+W++G
Sbjct: 195 VKDLLKPSWRQG 206