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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913662
Clone id YMU001_000032_H03
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGACAAAAAATGGTTGTATTACTGTTGTTATGAAGGTTGATAGTATACATTTAAGGTGT
AAAAGGGAGAACAACTATTTAAAGAATACATGGATCGAGAGCCTAGAGGTTAAGAAAAGA
GGGAAGTGTCTAAATTAAGGGACAGGTGAGGCGGCAGGGGCGACGCGGCCGCGCTCGCCA
ATGGCGTTGTGGGCGAACTTAATGCTGGCGATGTGCATGCCCTTGTCCTGCTCTGCGGCT
GACCACTCCTTGCGGTAGTAGTCCTCCTCCAACACGCCCTTGGACGGCGGCAGCAGCATC
CCGCCCCACTGCGGGAAATGCACCGCCACTAGCGGCAGCGTGCAGCATATCACCATCACC
CCCATCAGCATTATCCCCTTCTCGTCCGAGTATGCCGAGGTAGAAAAGAAGATGAGCTGC
GTCAGCATCGACCCGAATGTCCCTCCC
■■Homology search results ■■ -
sp_hit_id Q9MTM5
Definition sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta OS=Oenothera elata subsp. hookeri
Align length 43
Score (bit) 30.8
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913662|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H03.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta OS...    31   2.8  
sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing prot...    30   6.0  
sp|P09803|CADH1_MOUSE Epithelial cadherin OS=Mus musculus GN=Cdh...    29   7.8  
sp|Q6R8F2|CADH1_BOVIN Epithelial cadherin OS=Bos taurus GN=CDH1 ...    29   7.8  

>sp|Q9MTM5|RPOB_OENEH DNA-directed RNA polymerase subunit beta
           OS=Oenothera elata subsp. hookeri GN=rpoB PE=3 SV=2
          Length = 1072

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 82  KNTWIESLEVKKRGKCLN*GTGEAAGATRPRSPMALWANLMLA 210
           KNTW+       RGKC+  G   A GA      +AL  N+++A
Sbjct: 617 KNTWMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVA 659


>sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing protein
            KIAA1305 OS=Homo sapiens GN=KIAA1305 PE=2 SV=3
          Length = 1898

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 245  WSAAEQDKGMHIASIKFAHNAIGERGRVAPAASPVP*FRHFPLF--LTSRLSIHV 87
            WS   QDKG     +      +GE   + PAAS    F+  P F  L++ + IH+
Sbjct: 1258 WSLLVQDKGKRALELALLQGLLGENRLLTPAASMPRFFQVLPPFSDLSTFVCIHM 1312


>sp|P09803|CADH1_MOUSE Epithelial cadherin OS=Mus musculus GN=Cdh1
           PE=1 SV=1
          Length = 884

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 296 LLPPSKGVLEEDYYRKEWSAAEQDKGMHIASIKFAHNAIGE--RGRVAPAASPVP*FRHF 123
           LLPP     +  YY  E    E+D+   ++ +    +A  E  R  VAP    VP +R  
Sbjct: 743 LLPPDDDTRDNVYYYDEEGGGEEDQDFDLSQLHRGLDARPEVTRNDVAPTLMSVPQYRPR 802

Query: 122 P 120
           P
Sbjct: 803 P 803


>sp|Q6R8F2|CADH1_BOVIN Epithelial cadherin OS=Bos taurus GN=CDH1
           PE=2 SV=1
          Length = 882

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 296 LLPPSKGVLEEDYYRKEWSAAEQDKGMHIASIKFAHNAIGE--RGRVAPAASPVP*FRHF 123
           LLPP     +  YY  E    E+D+   ++ +    +A  E  R  VAP    VP +R  
Sbjct: 741 LLPPEDDTRDNVYYYDEEGGGEEDQDFDLSQLHRGLDARPEVTRNDVAPTLMSVPQYRPR 800

Query: 122 P 120
           P
Sbjct: 801 P 801
tr_hit_id A9SR55
Definition tr|A9SR55|A9SR55_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 103
Score (bit) 134.0
E-value 3.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913662|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H03.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SR55|A9SR55_PHYPA Predicted protein OS=Physcomitrella paten...   134   3e-30
tr|A1ILJ1|A1ILJ1_PHYPA Nitrate transporter OS=Physcomitrella pat...   134   3e-30
tr|Q5K409|Q5K409_9ROSI Nitrate transporter OS=Populus tremula x ...   129   7e-29
tr|Q6PRP8|Q6PRP8_CUCSA High-affinity nitrate transporter OS=Cucu...   128   2e-28
tr|Q76IJ7|Q76IJ7_PRUPE High-affinity nitrate transporter (Nitrat...   127   2e-28
tr|Q76IH8|Q76IH8_PRUPE High-affinity nitrate transporter (Nitrat...   126   5e-28
tr|A7PQU2|A7PQU2_VITVI Chromosome chr6 scaffold_25, whole genome...   125   8e-28
tr|A5BMD0|A5BMD0_VITVI Putative uncharacterized protein OS=Vitis...   125   8e-28
tr|A7PQU1|A7PQU1_VITVI Chromosome chr6 scaffold_25, whole genome...   125   1e-27
tr|O64999|O64999_SOYBN Putative high affinity nitrate transporte...   124   2e-27
tr|A9RJD6|A9RJD6_PHYPA Predicted protein OS=Physcomitrella paten...   124   2e-27
tr|A1ILJ2|A1ILJ2_PHYPA Nitrate transporter OS=Physcomitrella pat...   124   2e-27
tr|Q84LK4|Q84LK4_PHRAU Putative high affinity nitrate transporte...   124   2e-27
tr|A7QP22|A7QP22_VITVI Chromosome chr1 scaffold_135, whole genom...   124   2e-27
tr|Q6ZH34|Q6ZH34_ORYSJ Os02g0112100 protein OS=Oryza sativa subs...   124   3e-27
tr|O82138|O82138_ORYSA High affinity nitrate transporter OS=Oryz...   124   3e-27
tr|B8AGH0|B8AGH0_ORYSI Putative uncharacterized protein OS=Oryza...   124   3e-27
tr|A9TKX5|A9TKX5_PHYPA Predicted protein OS=Physcomitrella paten...   124   3e-27
tr|A2X014|A2X014_ORYSI Putative uncharacterized protein OS=Oryza...   124   3e-27
tr|A2X013|A2X013_ORYSI Putative uncharacterized protein OS=Oryza...   124   3e-27
tr|A1ILJ3|A1ILJ3_PHYPA Nitrate transporter OS=Physcomitrella pat...   124   3e-27
tr|Q9FJH8|Q9FJH8_ARATH High affinity nitrate transporter OS=Arab...   123   5e-27
tr|A7PT65|A7PT65_VITVI Chromosome chr8 scaffold_29, whole genome...   123   5e-27
tr|A5JUX2|A5JUX2_9ROSI Nitrate transporter OS=Citrus sinensis x ...   121   2e-26
tr|Q0VH23|Q0VH23_MAIZE High affinity nitrate transporter (Fragme...   120   3e-26
tr|P93183|P93183_HORVU BCH2 OS=Hordeum vulgare PE=2 SV=1              120   4e-26
tr|Q9ARC5|Q9ARC5_LOTJA Membrane transporter OS=Lotus japonicus G...   119   7e-26
tr|Q8RVZ3|Q8RVZ3_MAIZE High affinity nitrate transporter (Fragme...   118   1e-25
tr|Q84VI9|Q84VI9_MAIZE Putative high affinity nitrate transporte...   118   1e-25
tr|Q53CL7|Q53CL7_MAIZE Putative high affinity nitrate transporte...   118   1e-25

>tr|A9SR55|A9SR55_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_133761 PE=4 SV=1
          Length = 515

 Score =  134 bits (336), Expect = 3e-30
 Identities = 59/103 (57%), Positives = 79/103 (76%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVLE 267
           GG  GS+LTQ +FF++S+Y  E G++ MGVM++CCTL ++AV+FPQWGGM  PPSK V E
Sbjct: 393 GGNVGSVLTQALFFTSSSYHTETGLIYMGVMILCCTLLIIAVYFPQWGGMFFPPSKSVSE 452

Query: 266 EDYYRKEWSAAEQDKGMHIASIKFAHNAIGERGRVAPAASPVP 138
           EDYY  EW+A EQ++G+H+AS+KFA NA  ERG    ++S  P
Sbjct: 453 EDYYVSEWTAQEQEQGLHLASLKFAVNARSERGGYCSSSSADP 495


>tr|A1ILJ1|A1ILJ1_PHYPA Nitrate transporter OS=Physcomitrella patens
           GN=NRT2;6 PE=4 SV=1
          Length = 519

 Score =  134 bits (336), Expect = 3e-30
 Identities = 59/103 (57%), Positives = 79/103 (76%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVLE 267
           GG  GS+LTQ +FF++S+Y  E G++ MGVM++CCTL ++AV+FPQWGGM  PPSK V E
Sbjct: 397 GGNVGSVLTQALFFTSSSYHTETGLIYMGVMILCCTLLIIAVYFPQWGGMFFPPSKSVSE 456

Query: 266 EDYYRKEWSAAEQDKGMHIASIKFAHNAIGERGRVAPAASPVP 138
           EDYY  EW+A EQ++G+H+AS+KFA NA  ERG    ++S  P
Sbjct: 457 EDYYVSEWTAQEQEQGLHLASLKFAVNARSERGGYCSSSSADP 499


>tr|Q5K409|Q5K409_9ROSI Nitrate transporter OS=Populus tremula x
           Populus tremuloides GN=tNit2.2 PE=2 SV=1
          Length = 508

 Score =  129 bits (324), Expect = 7e-29
 Identities = 59/96 (61%), Positives = 74/96 (77%), Gaps = 2/96 (2%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPS--KGV 273
           GG  G++LTQLIFF  S YS E+GIMLMGVM+ICCTLP+  +HFPQWGGM   PS  K  
Sbjct: 396 GGNVGAVLTQLIFFRGSKYSKERGIMLMGVMIICCTLPICLIHFPQWGGMFCGPSSTKIA 455

Query: 272 LEEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERGR 165
            EEDYY  EW++ E++KG+H++S+KFA N+  ERGR
Sbjct: 456 TEEDYYLSEWNSEEKEKGLHLSSLKFADNSRSERGR 491


>tr|Q6PRP8|Q6PRP8_CUCSA High-affinity nitrate transporter OS=Cucumis
           sativus GN=NRT2 PE=2 SV=2
          Length = 530

 Score =  128 bits (321), Expect = 2e-28
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGV-- 273
           GG FGS LTQL+FFST+ YS + G+ LMG+M++CCTLP+  VHFPQWG M LPP+K V  
Sbjct: 418 GGNFGSGLTQLVFFSTTKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEK 477

Query: 272 -LEEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KG+H  SIKFA N+  ERG RVA A +P
Sbjct: 478 STEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRRVASAPTP 522


>tr|Q76IJ7|Q76IJ7_PRUPE High-affinity nitrate transporter (Nitrate
           transporter) OS=Prunus persica GN=PpNRT2;1 PE=2 SV=1
          Length = 530

 Score =  127 bits (320), Expect = 2e-28
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVL- 270
           GG FGS LTQL+FFS+SA+S   G+ LMGVM++CCTLP+  VHFPQWG M LPPSK V+ 
Sbjct: 418 GGNFGSGLTQLVFFSSSAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVK 477

Query: 269 --EEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KG+H  S++FA N+  ERG RVA A +P
Sbjct: 478 STEEFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTP 522


>tr|Q76IH8|Q76IH8_PRUPE High-affinity nitrate transporter (Nitrate
           transporter) OS=Prunus persica GN=PpNRT2;2 PE=2 SV=1
          Length = 530

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/105 (58%), Positives = 77/105 (73%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVL- 270
           GG FGS LTQL+FFS++A+S   G+ LMGVM++CCTLP+  VHFPQWG M LPPSK V+ 
Sbjct: 418 GGNFGSGLTQLVFFSSAAFSTATGLSLMGVMIVCCTLPVTLVHFPQWGSMFLPPSKDVVK 477

Query: 269 --EEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KG+H  S++FA N+  ERG RVA A +P
Sbjct: 478 STEEFYYGAEWNEEEKQKGLHQQSLRFAENSRSERGRRVASAPTP 522


>tr|A7PQU2|A7PQU2_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022199001
           PE=4 SV=1
          Length = 525

 Score =  125 bits (315), Expect = 8e-28
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVL- 270
           GG FGS LTQL+FFS+S +S   G+ LMG M++ CTLP+  VHFPQWG M LPPSK V+ 
Sbjct: 413 GGNFGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVIK 472

Query: 269 --EEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KGMH  S+KFA N+  ERG RVA A +P
Sbjct: 473 GTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGKRVASAPTP 517


>tr|A5BMD0|A5BMD0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002248 PE=4 SV=1
          Length = 523

 Score =  125 bits (315), Expect = 8e-28
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVL- 270
           GG FGS LTQL+FFS+S +S   G+ LMG M++ CTLP+  VHFPQWG M LPPSK V+ 
Sbjct: 411 GGNFGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVIK 470

Query: 269 --EEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KGMH  S+KFA N+  ERG RVA A +P
Sbjct: 471 GTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGKRVASAPTP 515


>tr|A7PQU1|A7PQU1_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022197001
           PE=4 SV=1
          Length = 530

 Score =  125 bits (314), Expect = 1e-27
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGVL- 270
           GG FGS LTQL+FFS+S +S   G+ LMG M++ CTLP+  VHFPQWG M LPPSK V+ 
Sbjct: 418 GGNFGSGLTQLVFFSSSKFSTATGLSLMGAMIVACTLPVTLVHFPQWGSMFLPPSKDVVK 477

Query: 269 --EEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KGMH  S+KFA N+  ERG RVA A +P
Sbjct: 478 GTEEHYYESEWNEEEKQKGMHQGSLKFAENSRSERGQRVASAPTP 522


>tr|O64999|O64999_SOYBN Putative high affinity nitrate transporter
           OS=Glycine max GN=NRT2 PE=2 SV=1
          Length = 530

 Score =  124 bits (312), Expect = 2e-27
 Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
 Frame = -2

Query: 446 GGTFGSMLTQLIFFSTSAYSDEKGIMLMGVMVICCTLPLVAVHFPQWGGMLLPPSKGV-- 273
           GG FGS LTQL+FFSTS +S   G+ LMGVM++ CTLP+  VHFPQWG M LPPSK V  
Sbjct: 418 GGNFGSGLTQLVFFSTSKFSTATGLSLMGVMIVACTLPVSVVHFPQWGSMFLPPSKDVSK 477

Query: 272 -LEEDYYRKEWSAAEQDKGMHIASIKFAHNAIGERG-RVAPAASP 144
             EE YY  EW+  E+ KG+H  S+KFA N+  ERG RVA A +P
Sbjct: 478 STEEFYYTSEWNEEEKQKGLHQQSLKFAENSRSERGKRVASAPTP 522