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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913663
Clone id YMU001_000032_H04
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCCCAGGAACAAATTGCAGCAACCAACAAGCTGATAAGTCGGT
ACATAGAAAGGCCGAAGTCTCCAGTTAAAAAGAATGCCATGGTACCACAATGCCAAACAA
ACTTTCAGTGAACCCCTACAGACGGCTGCACGAGCTGTGACAAGACTGCCACCTCATCCA
TCATGGTTTTTTCAGAGCCTCAGCAGTTGGAAGATTACCCACTTAACGCAAAGGCACAGC
GATGAGGGCCAACAACTTCAAACTAAAACCTGCCAGCATTGCTTGAAGGGGGATAAAGCA
GCACCTCACATAAAAGGTTGCCATCATGCGAGAGAGTGACCACTCAGCTGTTTCCACGAC
AATATTTGACTGAAAACCCTTGCTCTCACTTGGCCTAATAAAAAGTCCATGTAAACCCGA
CCAGCTTTAAGCCTTCACCTTGACTGACCACTTTTTTCCAAGCTGTTAAGACACCATGTC
CCTAGACCAGTATTAACATTCAATGCTATGTTCTCTCCCCTCATATCCTAGGATAAT
■■Homology search results ■■ -
sp_hit_id Q03185
Definition sp|Q03185|TS11_GIALA Major surface trophozoite antigen 11 OS=Giardia lamblia
Align length 36
Score (bit) 27.7
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913663|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H04.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03185|TS11_GIALA Major surface trophozoite antigen 11 OS=Gia...    28   0.19 
sp|A3DKS1|SYL_STAMF Leucyl-tRNA synthetase OS=Staphylothermus ma...    31   4.0  
sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2       30   8.8  
sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=FER1L3 PE=1 SV=1     30   8.8  

>sp|Q03185|TS11_GIALA Major surface trophozoite antigen 11
           OS=Giardia lamblia GN=TSP11 PE=3 SV=1
          Length = 667

 Score = 27.7 bits (60), Expect(2) = 0.19
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 52  PKSPVKKN----AMVPQCQTNFQ*TPTDGCTSCDKT 147
           PK+P + N    A   +C   F  TP++G +SC++T
Sbjct: 144 PKAPGEDNTPKAATCTKCAAGFLHTPSEGLSSCEET 179



 Score = 26.2 bits (56), Expect(2) = 0.19
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 245 KTCQHCLKGDKAAPHIKG 298
           KTC+ C  G   AP++KG
Sbjct: 195 KTCKSCTGGSSEAPNVKG 212


>sp|A3DKS1|SYL_STAMF Leucyl-tRNA synthetase OS=Staphylothermus
           marinus (strain ATCC 43588 / DSM 3639 / F1) GN=leuS PE=3
           SV=1
          Length = 969

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +2

Query: 140 TRLPPHPSWFFQSLSS-------WKITHLTQRHSDEGQQLQTKTCQHCLKG 271
           TRLP  P W  +SLS        + I HL ++H+ + +QL+ +   +   G
Sbjct: 522 TRLPFDPEWVIESLSDSTIYMAFYTIAHLIRKHNIKPEQLKPQVFDYVFLG 572


>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2
          Length = 2048

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 95   KQTFSEPLQTAARAVTRLPPHPSWFFQSLSSWKITHLTQRHSD 223
            K+  ++   + ARA+  L     W + SL  WK  H  QR SD
Sbjct: 1015 KKDLTQTASSTARAMEELEDREGWEYASLIGWKF-HWKQRSSD 1056


>sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=FER1L3 PE=1 SV=1
          Length = 2061

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 95   KQTFSEPLQTAARAVTRLPPHPSWFFQSLSSWKITHLTQRHSD 223
            K+  ++   + ARA+  L     W + SL  WK  H  QR SD
Sbjct: 1028 KKDLTQTASSTARAMEELQDQEGWEYASLIGWKF-HWKQRSSD 1069
tr_hit_id A8BC41
Definition tr|A8BC41|A8BC41_GIALA VSP with INR OS=Giardia lamblia ATCC 50803
Align length 36
Score (bit) 27.7
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913663|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H04.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8BC41|A8BC41_GIALA VSP with INR OS=Giardia lamblia ATCC 5080...    28   2.0  

>tr|A8BC41|A8BC41_GIALA VSP with INR OS=Giardia lamblia ATCC 50803
           GN=GL50803_115797 PE=4 SV=1
          Length = 682

 Score = 27.7 bits (60), Expect(2) = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 52  PKSPVKKN----AMVPQCQTNFQ*TPTDGCTSCDKT 147
           PK+P + N    A   +C   F  TP++G +SC++T
Sbjct: 159 PKAPGEDNTPKAATCTKCAAGFLHTPSEGLSSCEET 194



 Score = 26.2 bits (56), Expect(2) = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 245 KTCQHCLKGDKAAPHIKG 298
           KTC+ C  G   AP++KG
Sbjct: 210 KTCKSCTGGSSEAPNVKG 227