NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913666
Clone id YMU001_000032_H07
Library
Length 258
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000032_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCTCAGAGCTCATCCTGTTCGGCCTCTAGCTCGTCATCTCCTCCTCGTTCCTCCGGGT
CCGCTTGCGCTTTTGTACAAACCCTCCAATTCAGCAAATTATCCTAGGCACGCGAGCCCT
TTTCAACCTCATTGCACGTGAGCTCCTTCTGCTCTTCCTCAAGGAGTTGCAAGCACGTAC
GATGCTCACCTCGCTCGATGGCGCCTGACGAATAGAAAATGACCAGACGATCACCTCTTG
ATTTTCCCATTGAATGGG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913666|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H07.
         (258 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9PBZ2
Definition tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 21
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913666|Adiantum capillus-veneris mRNA, clone:
YMU001_000032_H07.
         (258 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul...    44   0.003
tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ...    42   0.012
tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz...    42   0.020
tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom...    42   0.020
tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p...    40   0.045
tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs...    40   0.045
tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.045
tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein At3g2450...    40   0.058
tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.100
tr|Q8LE64|Q8LE64_ARATH Putative uncharacterized protein OS=Arabi...    38   0.29 

>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 147

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 195 SMAPDE*KMTRRSPLDFPIEW 257
           SMAPDE K+TRRSPLDFPIEW
Sbjct: 65  SMAPDEEKLTRRSPLDFPIEW 85


>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1
          Length = 78

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 198 MAPDE*KMTRRSPLDFPIEW 257
           MAPDE KMTRRSPLDFPIEW
Sbjct: 1   MAPDEEKMTRRSPLDFPIEW 20


>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1
          Length = 79

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 198 MAPDE*KMTRRSPLDFPIEW 257
           MAPDE KMTRRSPLDFPIEW
Sbjct: 1   MAPDEEKMTRRSPLDFPIEW 20


>tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034399001
           PE=4 SV=1
          Length = 84

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +3

Query: 198 MAPDE*KMTRRSPLDFPIEW 257
           MAP+E KMTRRSPLDFPIEW
Sbjct: 1   MAPEEEKMTRRSPLDFPIEW 20


>tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacterized
           protein) (At2g17240/T23A1.10) OS=Arabidopsis thaliana
           GN=At2g17240 PE=2 SV=1
          Length = 140

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +3

Query: 195 SMAPDE*KMTRRSPLDFPIEW 257
           SMAP+E K+TRR+PLDFPIEW
Sbjct: 60  SMAPEEEKLTRRNPLDFPIEW 80


>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001
           PE=4 SV=1
          Length = 147

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +3

Query: 195 SMAPDE*KMTRRSPLDFPIEW 257
           SMAP+E K+TRR+PLDFPIEW
Sbjct: 64  SMAPEEEKLTRRNPLDFPIEW 84


>tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized
           protein At3g24506) (Putative uncharacterized protein
           At3g24506/MOB24.5) OS=Arabidopsis thaliana
           GN=At3g24506/MOB24.5 PE=2 SV=1
          Length = 149

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 195 SMAPDE*KMTRRSPLDFPIEW 257
           +MAP+E K+TRR+PLDFPIEW
Sbjct: 68  AMAPEEEKLTRRNPLDFPIEW 88


>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp.
           japonica GN=OJ2055_H10.18 PE=2 SV=1
          Length = 144

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 201 APDE*KMTRRSPLDFPIEW 257
           APDE K+TRRSPLDFPIEW
Sbjct: 57  APDEEKITRRSPLDFPIEW 75


>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08059 PE=4 SV=1
          Length = 144

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 201 APDE*KMTRRSPLDFPIEW 257
           APDE K+TRRSPLDFPIEW
Sbjct: 57  APDEEKITRRSPLDFPIEW 75


>tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein
           At3g24506/MOB24.5 OS=Arabidopsis thaliana
           GN=At3g24506/MOB24.5 PE=4 SV=1
          Length = 81

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +3

Query: 198 MAPDE*KMTRRSPLDFPIEW 257
           MAP+E K+TRR+PLDFPIEW
Sbjct: 1   MAPEEEKLTRRNPLDFPIEW 20