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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913674
Clone id YMU001_000033_A05
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTGTTGAAGTTTACCAGATCAAAAGATCAATTTCATCTCAGAAAGCG
AGTAACTTTCTGATGTACATTTGTAAATTTTGAGTGCTTTCTCACTCAATTGACAACCCA
ATACAACCTTACAATGAGCCATGCTCCCAAGCTAACTGCTCTCATTAAGCTGACTAAGAG
CTACAAGCAGTTGGAGAGCTGCCTGGTCTTTGGCTAGATTTTTTCGAGGTATCGGCTCGC
TTGTGGCGGTGACAAGCCCATGAGGCCCATCAACCTCAACGGTGAAGATAAATTTTTCGA
CATGCATATCCCATTGCTCTACGCACGTATATTAGGGTAGTGGCCACTTTTTCTTGAGGC
ATAATTCATTCAATTTTGATCGCCCACTGCCTTTTCCTATCACATTGATGGACAGCTCCA
TGGGCTCACCAAGGACCATCAATTGAGCCCTGAAAAGATCATTGACTTCTAC
■■Homology search results ■■ -
sp_hit_id Q9SP32
Definition sp|Q9SP32|DICER_ARATH Endoribonuclease Dicer homolog OS=Arabidopsis thaliana
Align length 39
Score (bit) 41.6
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913674|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A05.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SP32|DICER_ARATH Endoribonuclease Dicer homolog OS=Arabidop...    42   0.002
sp|Q32NQ7|CS051_XENLA UPF0470 protein C19orf51 homolog OS=Xenopu...    29   8.4  

>sp|Q9SP32|DICER_ARATH Endoribonuclease Dicer homolog OS=Arabidopsis
            thaliana GN=CAF PE=1 SV=2
          Length = 1909

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL+K WP+P Y CV E    H ++F F V V+
Sbjct: 1833 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVN 1871


>sp|Q32NQ7|CS051_XENLA UPF0470 protein C19orf51 homolog OS=Xenopus
           laevis PE=2 SV=1
          Length = 485

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 400 ELSINVIGKGSGRSKLNELCLKKKWP 323
           EL+I ++G G GR  L  +C   +WP
Sbjct: 42  ELNILLVGGGDGRHLLKTICQASRWP 67
tr_hit_id B3SRP9
Definition tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens
Align length 38
Score (bit) 44.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913674|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A05.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens GN=...    45   0.002
tr|A9S9V6|A9S9V6_PHYPA DsRNA-specific nuclease dicer and related...    45   0.002
tr|A9RV91|A9RV91_PHYPA DsRNA-specific nuclease dicer and related...    45   0.002
tr|Q8LMR2|Q8LMR2_ORYSJ Os03g0121800 protein OS=Oryza sativa subs...    42   0.012
tr|A7IYQ4|A7IYQ4_PHYPA Dicer-like 1b protein OS=Physcomitrella p...    42   0.012
tr|A3ADL0|A3ADL0_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.012
tr|A2XBW0|A2XBW0_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.012
tr|Q56Y50|Q56Y50_ARATH CAF protein OS=Arabidopsis thaliana GN=At...    42   0.020
tr|Q2HTA7|Q2HTA7_MEDTR Helicase, C-terminal; Argonaute and Dicer...    41   0.026
tr|A7PXV4|A7PXV4_VITVI Chromosome chr15 scaffold_37, whole genom...    41   0.026
tr|Q9LTQ0|Q9LTQ0_ARATH Similarity to CAF protein OS=Arabidopsis ...    39   0.17 
tr|Q94B67|Q94B67_ARATH Putative uncharacterized protein MQC12.19...    39   0.17 
tr|B8LN71|B8LN71_PICSI Putative uncharacterized protein OS=Picea...    37   0.38 
tr|A7P0L3|A7P0L3_VITVI Chromosome chr19 scaffold_4, whole genome...    35   1.4  
tr|A8XED6|A8XED6_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|A7SVV0|A7SVV0_NEMVE Predicted protein OS=Nematostella vectens...    35   1.9  
tr|A9T140|A9T140_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|Q9FKF0|Q9FKF0_ARATH Emb|CAB88120.1 OS=Arabidopsis thaliana GN...    34   4.2  
tr|Q9TYS1|Q9TYS1_CAEEL Putative uncharacterized protein D1037.1 ...    33   5.4  
tr|Q17BU1|Q17BU1_AEDAE Putative uncharacterized protein OS=Aedes...    33   7.1  

>tr|B3SRP9|B3SRP9_PHYPA Dicer-like 1 OS=Physcomitrella patens GN=DCL1a
            PE=2 SV=1
          Length = 1662

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEV 254
            R  LN+LCLK++WP+P Y CV E    H +KF F+V V
Sbjct: 1588 RQTLNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625


>tr|A9S9V6|A9S9V6_PHYPA DsRNA-specific nuclease dicer and related
           ribonuclease OS=Physcomitrella patens subsp. patens
           GN=PpDCL1b PE=4 SV=1
          Length = 961

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 364 RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEV 254
           R  +N+LCLK++WP+P Y CV E    H +KF F+V V
Sbjct: 776 RKTINDLCLKRQWPMPQYKCVLESGPAHAKKFTFSVRV 813


>tr|A9RV91|A9RV91_PHYPA DsRNA-specific nuclease dicer and related
            ribonuclease OS=Physcomitrella patens subsp. patens
            GN=PpDCL1a PE=4 SV=1
          Length = 1662

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEV 254
            R  LN+LCLK++WP+P Y CV E    H +KF F+V V
Sbjct: 1588 RQTLNDLCLKRQWPMPQYRCVLEGGPAHAKKFTFSVRV 1625


>tr|Q8LMR2|Q8LMR2_ORYSJ Os03g0121800 protein OS=Oryza sativa subsp.
            japonica GN=OJ1705B08.11 PE=4 SV=1
          Length = 1883

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL+++WP+P Y CV E    H ++F+++V V+
Sbjct: 1799 RQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837


>tr|A7IYQ4|A7IYQ4_PHYPA Dicer-like 1b protein OS=Physcomitrella patens
            GN=DCL1b PE=2 SV=1
          Length = 1695

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEV 254
            R  +N+LCLK++WP+P Y CV E    H +KF  +V V
Sbjct: 1611 RKTINDLCLKRQWPMPQYKCVLESGPAHAKKFTLSVRV 1648


>tr|A3ADL0|A3ADL0_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_008882 PE=4 SV=1
          Length = 1883

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL+++WP+P Y CV E    H ++F+++V V+
Sbjct: 1799 RQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837


>tr|A2XBW0|A2XBW0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_09779 PE=4 SV=1
          Length = 1883

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL+++WP+P Y CV E    H ++F+++V V+
Sbjct: 1799 RQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVN 1837


>tr|Q56Y50|Q56Y50_ARATH CAF protein OS=Arabidopsis thaliana
           GN=At1g01040 PE=2 SV=1
          Length = 690

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364 RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
           R  LN++CL+K WP+P Y CV E    H ++F F V V+
Sbjct: 614 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVN 652


>tr|Q2HTA7|Q2HTA7_MEDTR Helicase, C-terminal; Argonaute and Dicer
            protein, PAZ; Ribonuclease III, bacterial OS=Medicago
            truncatula GN=MtrDRAFT_AC150443g32v2 PE=4 SV=1
          Length = 1939

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL++ WP+P Y CV E    H ++F F V V+
Sbjct: 1862 RQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVN 1900


>tr|A7PXV4|A7PXV4_VITVI Chromosome chr15 scaffold_37, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00026189001
            PE=4 SV=1
          Length = 1961

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 364  RSKLNELCLKKKWPLP*YTCV-EQWDMHVEKFIFTVEVD 251
            R  LN++CL++ WP+P Y CV E    H ++F F V V+
Sbjct: 1885 RQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVN 1923