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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913675
Clone id YMU001_000033_A06
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTAAAACAATCCATGATTGTATATATCAAAAAGAGTAACACATAGGCCA
TACAAGAGGATTTCTCTATATTTACAATGACATTAAATCAGTCAAAGATCCCATTCACTT
TTGTCTGATAATCTGTGTGGATGTAACCAACTTCAAGATGGGTGACTTCGGACCTTGAAA
TGGAAAAAACGACAAACATGTCCACACCCAAAATGAGAATGACATCCAAAATCCCTCTGT
TCTATTGATGGTCATCCAAATATCAGTATAAAGACTTCAGAAAAAAAATCACCCATAGAT
GAAGAACACTTCTGTATTTCCCTTAATGGTGGGCCAATGCTGCTGCAGCTTCTTGGATTA
GTGGCCCTGTTGCATGCACAAATGACTCACTTGCACGATGCTTCTCTTGCCACTCGTTTA
CTGACGAGTGCCCCTCTGCC
■■Homology search results ■■ -
sp_hit_id Q12001
Definition sp|Q12001|ALG6_YEAST Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Saccharomyces cerevisiae
Align length 38
Score (bit) 30.0
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913675|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A06.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12001|ALG6_YEAST Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,...    30   4.0  
sp|P98131|LYAM1_BOVIN L-selectin OS=Bos taurus GN=SELL PE=2 SV=1       30   5.2  
sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul...    29   9.1  

>sp|Q12001|ALG6_YEAST Dolichyl pyrophosphate Man9GlcNAc2
           alpha-1,3-glucosyltransferase OS=Saccharomyces
           cerevisiae GN=ALG6 PE=1 SV=1
          Length = 544

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 263 SLYTDIWMTINRTEGFWMSFSFWVWTCLSFFPFQGPKS 150
           S Y D+W+ +N   GF     FW+W+    F   G KS
Sbjct: 504 SKYPDLWVLLNCAVGFICFSIFWLWSYYKIFT-SGSKS 540


>sp|P98131|LYAM1_BOVIN L-selectin OS=Bos taurus GN=SELL PE=2 SV=1
          Length = 370

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
 Frame = -3

Query: 245 WMTINRTEGFWMSFSFWVW--TCLSFFPFQG 159
           W   N   G W  F  WVW   C  FF   G
Sbjct: 5   WKCQNAQRGLWNVFKLWVWIMLCCDFFAHHG 35


>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus
            GN=Ranbp2 PE=1 SV=1
          Length = 3053

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 76   DIKSVKDPIHFCLIICVDVTNFKMGDFGP*NGKNDKHVHTQNEND 210
            + KS+KD   FC+ +  D   F + + G    K++KH+    END
Sbjct: 1716 EFKSIKDGFSFCIPVSADGFKFGIQEKGNQEKKSEKHL----END 1756
tr_hit_id A9SR20
Definition tr|A9SR20|A9SR20_PHYPA Beta-amylase OS=Physcomitrella patens subsp. patens
Align length 28
Score (bit) 40.0
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913675|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_A06.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SR20|A9SR20_PHYPA Beta-amylase OS=Physcomitrella patens sub...    40   0.059
tr|Q9LIR6|Q9LIR6_ARATH Beta-amylase OS=Arabidopsis thaliana GN=A...    39   0.17 
tr|Q8W2D8|Q8W2D8_BRANA Beta-amylase OS=Brassica napus GN=bmy PE=...    39   0.17 
tr|A9THN6|A9THN6_PHYPA Beta-amylase OS=Physcomitrella patens sub...    37   0.38 
tr|A9TTT8|A9TTT8_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  

>tr|A9SR20|A9SR20_PHYPA Beta-amylase OS=Physcomitrella patens subsp.
           patens GN=PHYPADRAFT_187470 PE=3 SV=1
          Length = 505

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = -2

Query: 399 WQEKHRASESFVHATGPLIQEAAAALAH 316
           W+E+H+ +E+ V ATGPL+QEAA+ + H
Sbjct: 478 WEEEHQRTETHVKATGPLVQEAASLMLH 505


>tr|Q9LIR6|Q9LIR6_ARATH Beta-amylase OS=Arabidopsis thaliana
           GN=At3g23920 PE=2 SV=1
          Length = 575

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 EGHSSVNEWQEKHRASESFVHATGPLIQEAAAALAH 316
           EG  S    +E  R +E FVH T PL+QEAA AL H
Sbjct: 540 EGRDSHRCREEVEREAEHFVHVTQPLVQEAAVALTH 575


>tr|Q8W2D8|Q8W2D8_BRANA Beta-amylase OS=Brassica napus GN=bmy PE=2
           SV=1
          Length = 569

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -2

Query: 423 EGHSSVNEWQEKHRASESFVHATGPLIQEAAAALAH 316
           EG  S    +E  R +E FVH T PL+QEAA AL H
Sbjct: 534 EGRDSDRCREEVEREAEHFVHVTQPLVQEAAVALTH 569


>tr|A9THN6|A9THN6_PHYPA Beta-amylase OS=Physcomitrella patens subsp.
           patens GN=PHYPADRAFT_222395 PE=3 SV=1
          Length = 507

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 399 WQEKHRASESFVHATGPLIQEAAAAL 322
           W+E+H  +E+ VHAT PL+QEAA+ +
Sbjct: 481 WEEEHHRTETHVHATRPLVQEAASLM 506


>tr|A9TTT8|A9TTT8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97038 PE=3 SV=1
          Length = 465

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -2

Query: 399 WQEKHRASESFVHATGPLIQEAAAALAH 316
           W+E+   +++ +HAT PL+QEAA+ + H
Sbjct: 438 WEEESHRTQNDMHATQPLVQEAASLMYH 465