BP913695
Clone id YMU001_000033_C03
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTTTTGAGGAAACCTAATGTTATATCGCCGCAATGGCCAATTTTTG
TAAAAGATTTGTAAGTTTCGAAGATAATGAATTGAGTGTCCGTACTTCTGCCTATCTGCA
TGCTTATCTGTCAGTCCCTCCTAAAGTGCTCACCTCAAAAGACTGTCATCAAGCTGCAGC
CCTTAGGCCAATTCTTATGGGAATAACTAGCAAGGGGCCAAATTGCTTCCTTCAAATTCA
CCGCTACCACAACACTGAACAATGAATACCTATCCTAACTACACTATCCCGATAGAGCTC
ATGTGCTACACAAAATTATGCTCTCGGTCAATGACTCTTGAATCAAATCAATACATTGAT
TGCATGAATGACCATCTATGTCCTCCACAACGGTTCAAAAAACATGGGGCTTCAATTTTC
TAGCAGCATTCCATTTTGCCAAGCTTTTTAATCTTTCCACACTACCAAGCTTCAAAAGCC
ACTACACAGACCAGCCATGACATTGATCTGAGACTGTCTGAGTATACTGTCAATTC
■■Homology search results ■■ -
sp_hit_id Q9Y5J1
Definition sp|Q9Y5J1|UTP18_HUMAN U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens
Align length 64
Score (bit) 30.4
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913695|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C03.
(517 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9Y5J1|UTP18_HUMAN U3 small nucleolar RNA-associated protein ... 30 5.2
sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium ... 30 8.7

>sp|Q9Y5J1|UTP18_HUMAN U3 small nucleolar RNA-associated protein 18
homolog OS=Homo sapiens GN=UTP18 PE=1 SV=3
Length = 556

Score = 30.4 bits (67), Expect = 5.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +1

Query: 19 IAAMANFCKRFVSFED------NELSVRTSAYLHAYLSVPPKVLTSKDCHQAAALRPILM 180
+ A A KR S +D ++L RT ++ S+P +L K+C A A RP +
Sbjct: 193 VPAWAETTKRKTSSDDESEEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVA 252

Query: 181 GITS 192
I+S
Sbjct: 253 RISS 256


>sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium
discoideum GN=kif4 PE=2 SV=1
Length = 1922

Score = 29.6 bits (65), Expect = 8.7
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3

Query: 303 SRSMTLESNQYIDCMNDHLCPPQRFKKHGASI 398
+ TL+ ++Y+D + D++C + F+K AS+
Sbjct: 1715 TEQFTLKESEYLDTITDYVCKEKEFEKSKASL 1746


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913695|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C03.
(517 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******