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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913696
Clone id YMU001_000033_C04
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCGGCCGCAGGAATTTGTTTTTTTTTTTCAGTTTATCGATTTGCGAAA
ATTACAAGAAAAGTGTGGTACAAACTTTAGTTTGTCCAATTGTCATCCTCAATGCCAGGA
CTAAACCAAAAACATGGCCACCGCCCCAAAAACCAAGAGCCGTAAACGACGAAACTTTCA
ATGAGATCTCTTGTATTTACAAGGTTAATCTCCTAACCTCCGTCAAAACTGGGCATGACT
TAAAGCAGGTGGAAACTGCCATGATTATTATACAAACGAAGGCAGTTCCCTCTCCTGGCA
CGACTCCCCGCAAAAAAATAGATTCAAATTTGTACACAAAACTAAGAGAGAACCAAGTGG
GCGGCCTAATAGCTTCATCCATTCAAGCGCGCCACAAACTGGTCCAGATTATATTCCTCG
TTGTATTGTGACTGATCCCATAAATCCTCTAATCCATTTAAAACTGCTTTTAGACCTTTG
CCACCACTTACTCCGGCTGCTGCTAC
■■Homology search results ■■ -
sp_hit_id O14981
Definition sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens
Align length 40
Score (bit) 43.1
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913696|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C04.
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172...    43   6e-04
sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1...    40   0.005
sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyc...    38   0.025
sp|A7I1F0|LEPA_CAMHC GTP-binding protein lepA OS=Campylobacter h...    31   2.3  
sp|Q7ZXH1|DHCR7_XENLA 7-dehydrocholesterol reductase OS=Xenopus ...    31   3.1  
sp|Q6P4M0|DHCR7_XENTR 7-dehydrocholesterol reductase OS=Xenopus ...    30   4.0  
sp|Q9Z2Z8|DHCR7_RAT 7-dehydrocholesterol reductase OS=Rattus nor...    30   4.0  
sp|Q3Z0G5|HISX_SHISS Histidinol dehydrogenase OS=Shigella sonnei...    30   5.2  
sp|Q323J2|HISX_SHIBS Histidinol dehydrogenase OS=Shigella boydii...    30   5.2  
sp|P10370|HISX_SALTY Histidinol dehydrogenase OS=Salmonella typh...    30   5.2  
sp|Q8Z5K0|HISX_SALTI Histidinol dehydrogenase OS=Salmonella typh...    30   5.2  
sp|Q5PDP3|HISX_SALPA Histidinol dehydrogenase OS=Salmonella para...    30   5.2  
sp|Q57MS3|HISX_SALCH Histidinol dehydrogenase OS=Salmonella chol...    30   5.2  
sp|O88455|DHCR7_MOUSE 7-dehydrocholesterol reductase OS=Mus musc...    30   5.2  
sp|Q5IH13|SPP2_TOBAC Sucrose-phosphatase 2 OS=Nicotiana tabacum ...    29   8.9  
sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 OS=Sacch...    29   8.9  

>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172
            OS=Homo sapiens GN=BTAF1 PE=1 SV=2
          Length = 1849

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 463  AAAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            A    SG   +K++L  L DLWDQ QY+ EY+L+ F+  L
Sbjct: 1809 ADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSL 1848


>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1
            OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1
          Length = 1867

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = -1

Query: 430  KAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            K  L  L++LWD SQY EEYNLD F+  L
Sbjct: 1838 KEALGELKELWDPSQYEEEYNLDTFIKTL 1866


>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces
            pombe GN=mot1 PE=1 SV=4
          Length = 1953

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = -1

Query: 463  AAAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            A  G+SG    K  L GL ++WD+SQY +E+NLD F++ L
Sbjct: 1912 AGRGLSGTS--KKALEGLPEMWDESQY-DEFNLDGFISTL 1948


>sp|A7I1F0|LEPA_CAMHC GTP-binding protein lepA OS=Campylobacter
           hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
           CH001A) GN=lepA PE=3 SV=1
          Length = 596

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +2

Query: 128 DETFNEISCIYKVN----LLTSVKTGHDLKQVETAMIIIQTKAVPSPGTTPRKKIDSNLY 295
           D   NEI  I  ++    +  S KTG  +K +  A+I    K +P+P   P+K + + +Y
Sbjct: 140 DRVKNEIEHIIGIDCTDAIEVSAKTGIGIKDLIEAII----KRIPAPKIEPKKPLKAIIY 195

Query: 296 TKLRENQVGGL 328
               +N +G L
Sbjct: 196 DSWFDNYLGAL 206


>sp|Q7ZXH1|DHCR7_XENLA 7-dehydrocholesterol reductase OS=Xenopus
           laevis GN=dhcr7 PE=2 SV=1
          Length = 473

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
 Frame = -1

Query: 196 MPSFDGG*EINLVNTRDLIESFVVYGS---------WFLGRWPCFWFSPGIEDDNW 56
           +P ++GG +        LI  + V G          WF   +   WFSP I  DNW
Sbjct: 120 VPGYEGGVQEGARTPAGLINKYQVNGLQAWTITHLLWFANAYHFHWFSPTIVIDNW 175


>sp|Q6P4M0|DHCR7_XENTR 7-dehydrocholesterol reductase OS=Xenopus
           tropicalis GN=dhcr7 PE=2 SV=1
          Length = 473

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
 Frame = -1

Query: 196 MPSFDGG*EINLVNTRDLIESFVVYGS---------WFLGRWPCFWFSPGIEDDNW 56
           +P ++GG +        LI  + V G          WF   +   WFSP I  DNW
Sbjct: 120 VPGYEGGVQEGARTPAGLINKYQVNGLQAWTITHLLWFANAYHFHWFSPTIIIDNW 175


>sp|Q9Z2Z8|DHCR7_RAT 7-dehydrocholesterol reductase OS=Rattus
           norvegicus GN=Dhcr7 PE=2 SV=1
          Length = 471

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
 Frame = -1

Query: 196 MPSFDGG*EINLVNTRDLIESFVVYGS---------WFLGRWPCFWFSPGIEDDNW 56
           +P + GG +   +    ++  + V G          WF+  +   WFSP I  DNW
Sbjct: 118 LPGYVGGVQEGAITPAGIVNKYEVNGLQAWLITHFLWFVNAYLLSWFSPTIIFDNW 173


>sp|Q3Z0G5|HISX_SHISS Histidinol dehydrogenase OS=Shigella sonnei
           (strain Ss046) GN=hisD PE=3 SV=1
          Length = 434

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 244 CLRLYNNHGSFHLL*VMPSFDGG*EINLVNTRDLIESFVVYGSWFLGRW 98
           C+ + N +G  HL+           I   N RDL++     GS FLG W
Sbjct: 316 CVEISNQYGPEHLI-----------IQTRNARDLVDGITSAGSVFLGDW 353


>sp|Q323J2|HISX_SHIBS Histidinol dehydrogenase OS=Shigella boydii
           serotype 4 (strain Sb227) GN=hisD PE=3 SV=1
          Length = 434

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 244 CLRLYNNHGSFHLL*VMPSFDGG*EINLVNTRDLIESFVVYGSWFLGRW 98
           C+ + N +G  HL+           I   N RDL++     GS FLG W
Sbjct: 316 CVEISNQYGPEHLI-----------IQTRNARDLVDGITSAGSVFLGDW 353


>sp|P10370|HISX_SALTY Histidinol dehydrogenase OS=Salmonella
           typhimurium GN=hisD PE=1 SV=3
          Length = 434

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 244 CLRLYNNHGSFHLL*VMPSFDGG*EINLVNTRDLIESFVVYGSWFLGRW 98
           C+ + N +G  HL+           I   N RDL+++    GS FLG W
Sbjct: 316 CVAISNQYGPEHLI-----------IQTRNARDLVDAITSAGSVFLGDW 353
tr_hit_id A9SFY1
Definition tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 67.4
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913696|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C04.
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling pro...    67   3e-10
tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein O...    67   4e-10
tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza...    67   4e-10
tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza...    67   4e-10
tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome...    61   2e-08
tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated...    60   4e-08
tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis tha...    60   4e-08
tr|A4S4D1|A4S4D1_OSTLU Predicted protein OS=Ostreococcus lucimar...    50   6e-05
tr|Q00ZA8|Q00ZA8_OSTTA Putative SNF2 domain-containing protein (...    48   2e-04
tr|Q7PUQ9|Q7PUQ9_ANOGA AGAP001820-PA (Fragment) OS=Anopheles gam...    47   4e-04
tr|Q54M42|Q54M42_DICDI SNF2-related domain-containing protein OS...    44   0.003
tr|Q4T5Z8|Q4T5Z8_TETNG Chromosome undetermined SCAF9015, whole g...    44   0.004
tr|B6KZG7|B6KZG7_BRAFL Putative uncharacterized protein OS=Branc...    44   0.004
tr|Q4WJI7|Q4WJI7_ASPFU TBP associated factor (Mot1), putative OS...    44   0.004
tr|Q1E0N5|Q1E0N5_COCIM Putative uncharacterized protein OS=Cocci...    44   0.004
tr|B8M870|B8M870_9EURO TBP associated factor (Mot1), putative OS...    44   0.004
tr|B6Q674|B6Q674_PENMA TBP associated factor (Mot1), putative OS...    44   0.004
tr|B0XPE7|B0XPE7_ASPFC TBP associated factor (Mot1), putative OS...    44   0.004
tr|A6QS31|A6QS31_AJECN Putative uncharacterized protein OS=Ajell...    44   0.004
tr|A1D445|A1D445_NEOFI TBP associated factor (Mot1), putative OS...    44   0.004
tr|Q8BTS9|Q8BTS9_MOUSE Putative uncharacterized protein (Fragmen...    44   0.005
tr|Q52KH4|Q52KH4_MOUSE Btaf1 protein (Fragment) OS=Mus musculus ...    44   0.005
tr|A0ZVB6|A0ZVB6_MOUSE TBP-associated factor 170 OS=Mus musculus...    44   0.005
tr|B6PIK3|B6PIK3_BRAFL Putative uncharacterized protein OS=Branc...    44   0.005
tr|B8A5E7|B8A5E7_DANRE Novel protein similar to H.sapiens BTAF1,...    43   0.007
tr|Q8N6J1|Q8N6J1_HUMAN BTAF1 protein (Fragment) OS=Homo sapiens ...    43   0.007
tr|Q5VXE8|Q5VXE8_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri...    43   0.007
tr|Q59HB6|Q59HB6_HUMAN BTAF1 RNA polymerase II, B-TFIID transcri...    43   0.007
tr|B4E0W6|B4E0W6_HUMAN cDNA FLJ54397, highly similar to TATA-bin...    43   0.007
tr|A7TGL6|A7TGL6_VANPO Putative uncharacterized protein OS=Vande...    43   0.007

>tr|A9SFY1|A9SFY1_PHYPA SNF2 superfamily chromatin remodeling protein
            OS=Physcomitrella patens subsp. patens GN=CHR1532 PE=4
            SV=1
          Length = 2041

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = -1

Query: 463  AAAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            AAA V   KGLKA+LN LE+LWDQSQY+EEYNL QFV+RLNG
Sbjct: 2000 AAASVGVNKGLKAMLNNLEELWDQSQYSEEYNLVQFVSRLNG 2041


>tr|Q6H7U1|Q6H7U1_ORYSJ Putative SNF2 domain-containing protein
            OS=Oryza sativa subsp. japonica GN=OJ9003_G05.21 PE=4
            SV=1
          Length = 2057

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 28/39 (71%), Positives = 37/39 (94%)
 Frame = -1

Query: 454  GVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            G SGGKGLK++LNGL++LWDQSQY +EY+L+QF+A+LNG
Sbjct: 2019 GKSGGKGLKSILNGLDELWDQSQYADEYDLNQFLAKLNG 2057


>tr|A3A3E1|A3A3E1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_005313 PE=4 SV=1
          Length = 2514

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 28/39 (71%), Positives = 37/39 (94%)
 Frame = -1

Query: 454  GVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            G SGGKGLK++LNGL++LWDQSQY +EY+L+QF+A+LNG
Sbjct: 2476 GKSGGKGLKSILNGLDELWDQSQYADEYDLNQFLAKLNG 2514


>tr|A2X169|A2X169_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_05951 PE=4 SV=1
          Length = 936

 Score = 67.0 bits (162), Expect = 4e-10
 Identities = 28/39 (71%), Positives = 37/39 (94%)
 Frame = -1

Query: 454  GVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            G SGGKGLK++LNGL++LWDQSQY +EY+L+QF+A+LNG
Sbjct: 898  GKSGGKGLKSILNGLDELWDQSQYADEYDLNQFLAKLNG 936


>tr|A7PSP4|A7PSP4_VITVI Chromosome chr6 scaffold_28, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00023017001
            PE=4 SV=1
          Length = 1592

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 26/38 (68%), Positives = 30/38 (78%)
 Frame = -1

Query: 451  VSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            V  GKGLKA+L GLE+LWD SQY EEYNL  F+ +LNG
Sbjct: 1555 VGSGKGLKAILGGLEELWDHSQYTEEYNLSNFLTKLNG 1592


>tr|Q9M378|Q9M378_ARATH TATA box binding protein (TBP) associated
            factor (TAF)-like protein OS=Arabidopsis thaliana
            GN=F24B22.240 PE=4 SV=1
          Length = 2049

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -1

Query: 442  GKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            GKG+KA+L  LE+LWDQSQY EEYNL QF+ +LNG
Sbjct: 2015 GKGMKAILGNLEELWDQSQYTEEYNLSQFLTKLNG 2049


>tr|B5BT18|B5BT18_ARATH Homolog of human BTAF1 OS=Arabidopsis thaliana
            GN=AtBTAF1 PE=2 SV=1
          Length = 2045

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -1

Query: 442  GKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARLNG 338
            GKG+KA+L  LE+LWDQSQY EEYNL QF+ +LNG
Sbjct: 2011 GKGMKAILGNLEELWDQSQYTEEYNLSQFLTKLNG 2045


>tr|A4S4D1|A4S4D1_OSTLU Predicted protein OS=Ostreococcus lucimarinus
            (strain CCE9901) GN=CHR3510 PE=4 SV=1
          Length = 1769

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 21/40 (52%), Positives = 33/40 (82%)
 Frame = -1

Query: 463  AAAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            AAAG + G GL  ++NGLE++WD++QY EE+++D FV++L
Sbjct: 1728 AAAGAASG-GLSNIVNGLEEMWDEAQYAEEFSVDDFVSKL 1766


>tr|Q00ZA8|Q00ZA8_OSTTA Putative SNF2 domain-containing protein (ISS)
            OS=Ostreococcus tauri GN=Ot11g00460 PE=4 SV=1
          Length = 1782

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 32/40 (80%)
 Frame = -1

Query: 463  AAAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            AA G + G GL  ++NGLE++WD++QY EE+++D FV++L
Sbjct: 1741 AAVGAASG-GLANIVNGLEEMWDEAQYAEEFDVDDFVSKL 1779


>tr|Q7PUQ9|Q7PUQ9_ANOGA AGAP001820-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP001820 PE=4 SV=4
          Length = 1987

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 21/39 (53%), Positives = 27/39 (69%)
 Frame = -1

Query: 460  AAGVSGGKGLKAVLNGLEDLWDQSQYNEEYNLDQFVARL 344
            A G +GG  +K VL  L +LWD SQY+EEY+L QF+  L
Sbjct: 1943 ANGSNGGAAIKTVLENLPELWDDSQYHEEYDLSQFLEGL 1981