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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913702
Clone id YMU001_000033_C11
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTAATCTAGAGATAACTGTCCTTATGGGTGGCATGGACAGTGTTACATTTCACTCACGTT
GCCCCATGAAAGGCTAAGCGATGCTGATATTGCCATTGGAAGAAATGGAAGGGCCAATCT
GGAACATCAACATTTTGGGAATTTGTCAAAGTGCTTCAACTCAGTTGCTGAGGACATGAA
AGGTCTTCTAAAAGAAAGTTTGTGAATTCCCTGGCAGATAACAGCATTACTTCATTGCAT
AGTGCGTGCATATGATTTTGGATGCTCAGTGTCAAGGTGGGGTTGTTTACGAGCATAGGG
GAAGTGGTTGATCACAATAGAGGTTTGGCCTTTACTGCTAAACTCCTCAATGGTCCCCTG
TTGAAGGGTGATATGGTTGGGTGGTATCTCTGAACCAAGCAAGGGGCGGACGTGGTAACT
ACAAAATGTCTTGCATTTTTCTGCATAGGACAAAGACCTGCATGACAGAGGTTACAAAAT
GTCCTTGTGATGGGTATGTATGACAATAA
■■Homology search results ■■ -
sp_hit_id A5IHA2
Definition sp|A5IHA2|ARLY_LEGPC Argininosuccinate lyase OS=Legionella pneumophila (strain Corby)
Align length 49
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913702|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C11.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5IHA2|ARLY_LEGPC Argininosuccinate lyase OS=Legionella pneum...    31   2.9  
sp|Q5X7P8|ARLY_LEGPA Argininosuccinate lyase OS=Legionella pneum...    31   2.9  
sp|A7HC45|MUTL_ANADF DNA mismatch repair protein mutL OS=Anaerom...    30   6.6  
sp|Q5WZ49|ARLY_LEGPL Argininosuccinate lyase OS=Legionella pneum...    30   6.6  
sp|Q5ZY77|ARLY_LEGPH Argininosuccinate lyase OS=Legionella pneum...    30   6.6  
sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 O...    30   8.6  

>sp|A5IHA2|ARLY_LEGPC Argininosuccinate lyase OS=Legionella
           pneumophila (strain Corby) GN=argH PE=3 SV=1
          Length = 411

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 263 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 117
           I  H+  LC +++L S +EF   +L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVILDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q5X7P8|ARLY_LEGPA Argininosuccinate lyase OS=Legionella
           pneumophila (strain Paris) GN=argH PE=3 SV=1
          Length = 411

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 263 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 117
           I  H+  LC +++L S +EF   +L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVILDDAFATGS---SLMPNKKNPDVPE 292


>sp|A7HC45|MUTL_ANADF DNA mismatch repair protein mutL
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mutL PE=3
           SV=1
          Length = 601

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   EITVLMGGMDSVTFHSRCPMKG*AMLILPLEEME 110
           E   L+ G+D++ F +RCP     +  LPL E+E
Sbjct: 562 EARALLDGLDAIDFKARCPHGRPVVFELPLAELE 595


>sp|Q5WZ49|ARLY_LEGPL Argininosuccinate lyase OS=Legionella
           pneumophila (strain Lens) GN=argH PE=3 SV=1
          Length = 411

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 263 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 117
           I  H+  LC +++L S +EF    L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVTLDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q5ZY77|ARLY_LEGPH Argininosuccinate lyase OS=Legionella
           pneumophila subsp. pneumophila (strain Philadelphia 1 /
           ATCC 33152 / DSM 7513) GN=argH PE=3 SV=2
          Length = 411

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 263 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 117
           I  H+  LC +++L S +EF    L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVTLDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4
           OS=Homo sapiens GN=LRRC4 PE=1 SV=2
          Length = 653

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = -1

Query: 509 LLSYIPITRTFCNLCHAGLCPMQKNARHFV------VTTSAPCLVQRYHPTISPFNRGPL 348
           L  YIP   T C  CHA   PM    R+ V         SAP ++    P     + G +
Sbjct: 315 LREYIPTNSTCCGRCHA---PMHMRGRYLVEVDQASFQCSAPFIMDA--PRDLNISEGRM 369

Query: 347 RSLAVKAKPLL*STTSPMLVNNPTLTLSIQNHMHALCNEVMLLSAREFTNFLLED 183
             L  +  P+  S+   +L N   L+ + ++   ++ N+  L     F++ LL D
Sbjct: 370 AELKCRTPPM--SSVKWLLPNGTVLSHASRHPRISVLNDGTL----NFSHVLLSD 418
tr_hit_id B7YQF4
Definition tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein OS=Variovorax paradoxus S110
Align length 62
Score (bit) 34.3
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913702|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_C11.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein OS=Variov...    34   3.6  
tr|A7HCT3|A7HCT3_ANADF Cell surface receptor IPT/TIG domain prot...    34   4.7  
tr|A4HUR2|A4HUR2_LEIIN Chromosome 10 (Fragment) OS=Leishmania in...    33   6.1  
tr|Q8ZTY2|Q8ZTY2_PYRAE Putative uncharacterized protein PAE3035 ...    33   8.0  

>tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein
           OS=Variovorax paradoxus S110 GN=VaparDRAFT_3329 PE=4
           SV=1
          Length = 613

 Score = 34.3 bits (77), Expect = 3.6
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 175 HERSSKRKFVNSLADNSITSLHSACI*FWMLSVKVGLFTSIGEVVDHNRGLAFTAKLLNG 354
           ++R   R  V++LA      L   CI FW+ S +  L  + G ++DH    A    +LN 
Sbjct: 63  YDRVLSRSGVSTLAALVCGILFFLCIEFWLRSGRSRLLRNAGAIIDHGVSGALLHSMLNR 122

Query: 355 PL 360
           PL
Sbjct: 123 PL 124


>tr|A7HCT3|A7HCT3_ANADF Cell surface receptor IPT/TIG domain protein
             OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2327
             PE=4 SV=1
          Length = 12684

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = -3

Query: 465   SCRSLSYAEKCKTFCSYHVRPLLGSEIPPNHITLQQGTIEEFSSKGQTSIVINHFPYARK 286
             SCR+    + C++FC+ +V P  G      ++ +    ++ F + G +S   +++PYA +
Sbjct: 10048 SCRTSYSNDDCQSFCAEYVVPASG------NVLVSAEALDVFGASGTSS--YSYYPYANQ 10099

Query: 285   QPHLDTEHPKSY 250
              P +     + Y
Sbjct: 10100 PPSVSMSERRDY 10111


>tr|A4HUR2|A4HUR2_LEIIN Chromosome 10 (Fragment) OS=Leishmania
           infantum GN=LinJ10.1830 PE=4 SV=1
          Length = 1224

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 381 PNHITLQQGTIEEFSSKGQTSIVINHFPYARKQPHLDTEHPKSYARTMQ*SNAVICQGIH 202
           P  ++   G   E   +G  ++   H   A K P LD  H  + + ++  S  V    +H
Sbjct: 215 PQRVSAAGGGRLELRMRGLVALPCLHLSAAPKSPSLDARHESTTSSSVHGSGDVAAGRLH 274

Query: 201 KLSFRRPFMSS 169
            +SFR+  +SS
Sbjct: 275 AVSFRQNAISS 285


>tr|Q8ZTY2|Q8ZTY2_PYRAE Putative uncharacterized protein PAE3035
           OS=Pyrobaculum aerophilum GN=PAE3035 PE=4 SV=1
          Length = 160

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 491 ITRTFCNLCHAGLCPMQKNARHFVVT---TSAPCLVQRYHPTISPFNRGPLRSLAVK 330
           + R    + HAG+   +K A+H+VV    TS P +V      I PF+RG L  L ++
Sbjct: 89  LIRPIVKIRHAGV--QKKRAQHYVVVQFLTSHPAIVTEDFVQIGPFSRGDLAKLPLR 143