BP913707 |
Clone id |
YMU001_000033_D04 |
Library |
YMU01 |
Length |
578 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000033_D04. |
Accession |
BP913707 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CAGCAGTTTTCTACTCCATCATGATATAAAAAGAGACAAAAATACACAGACAAAATAAAG TGTTGATGCACAAATACAAAAAGTGTGCTACACCCAAACTGCAAAAAGCAAAAACTGCTT TTTACGTTTCAGACCGCACAGTTTGGACCGTTCGAGTGCTACAAGAATAGTAGGTACCTA CACAACCTAAATCACATTATTTACTGAACTAATCAAGCAGCCAATGTACAAGGGTACCTT GCTGCAGTCCCATTTGAGCCACAAGGTAGCGTTGTAGCGTTAAATACGTTATACAACCCT CTAGTGCACAAGAAGGGTTTCTGTACAGCTACTAGTGTGTTAGAGGCACCTGATTCCTCA CACATCAAAAGCTTTGTATTGTAGCCCACTCTACATCATACAAGGTGACAGAAAATATAA ACCCAGAAAATTTCCGCATAGATCGCCACTGATACTTCGCAGCAACCATCACTTCTTCAT ATTGCTTGGCAGCCTGATCCCAACTCAGATCTTGCGTCATGCCTCTTTCTTGGATGCCCT TCCAACTGTCTTTAAAATCGCGAAATGTCCACATCGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43093 |
Definition |
sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum |
Align length |
48 |
Score (bit) |
78.2 |
E-value |
3.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP913707|Adiantum capillus-veneris mRNA, clone: YMU001_000033_D04. (578 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplasti... 78 3e-14 sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplas... 70 6e-12 sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic... 70 8e-12 sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic... 69 1e-11 sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic... 69 1e-11 sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic... 69 2e-11 sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplast... 53 1e-06 sp|Q0DEC8|SSY1_ORYSJ Soluble starch synthase 1, chloroplastic/am... 50 6e-06 sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1, chloroplastic/am... 50 6e-06 sp|Q9FNF2|SSY1_ARATH Soluble starch synthase, chloroplastic/amyl... 50 8e-06 sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/am... 45 2e-04 sp|A3CM04|GLGA_STRSV Glycogen synthase OS=Streptococcus sanguini... 42 0.003 sp|Q7V8F0|GLGA_PROMM Glycogen synthase OS=Prochlorococcus marinu... 41 0.004 sp|Q3AVF9|GLGA_SYNS9 Glycogen synthase OS=Synechococcus sp. (str... 40 0.008 sp|Q7U7I2|GLGA_SYNPX Glycogen synthase OS=Synechococcus sp. (str... 40 0.011 sp|Q8YVU5|GLGA1_ANASP Glycogen synthase 1 OS=Anabaena sp. (strai... 40 0.011 sp|Q3AKK1|GLGA_SYNSC Glycogen synthase OS=Synechococcus sp. (str... 39 0.014 sp|A5GBI7|GLGA_GEOUR Glycogen synthase OS=Geobacter uraniireduce... 39 0.014 sp|Q3M3R4|GLGA2_ANAVT Glycogen synthase 2 OS=Anabaena variabilis... 39 0.014 sp|Q5N1P1|GLGA_SYNP6 Glycogen synthase OS=Synechococcus sp. (str... 39 0.019 sp|Q935Y7|GLGA_SYNE7 Glycogen synthase OS=Synechococcus elongatu... 39 0.019 sp|Q7V275|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinu... 39 0.019 sp|Q0I9Y8|GLGA_SYNS3 Glycogen synthase OS=Synechococcus sp. (str... 39 0.025 sp|A8G3X5|GLGA_PROM2 Glycogen synthase OS=Prochlorococcus marinu... 39 0.025 sp|A3PBY3|GLGA_PROM0 Glycogen synthase OS=Prochlorococcus marinu... 39 0.025 sp|Q2IM81|GLGA_ANADE Glycogen synthase OS=Anaeromyxobacter dehal... 39 0.025 sp|Q113E3|GLGA_TRIEI Glycogen synthase OS=Trichodesmium erythrae... 38 0.042 sp|A2CAW5|GLGA_PROM3 Glycogen synthase OS=Prochlorococcus marinu... 38 0.042 sp|A8AYH0|GLGA_STRGC Glycogen synthase OS=Streptococcus gordonii... 37 0.055 sp|Q8E079|GLGA_STRA5 Glycogen synthase OS=Streptococcus agalacti... 37 0.055
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Length = 752
Score = 78.2 bits (191), Expect = 3e-14 Identities = 34/48 (70%), Positives = 42/48 (87%), Gaps = 4/48 (8%) Frame = -2
Query: 577 AMW----TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 A+W T++D+K SW+GIQERGM+QDLSWD AA+QYEEV+VAAKYQW Sbjct: 705 ALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLVAAKYQW 752
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Length = 767
Score = 70.5 bits (171), Expect = 6e-12 Identities = 29/41 (70%), Positives = 36/41 (87%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R++K SW+GIQ R MTQDLSWD AA+ YEEV++AAKYQW Sbjct: 727 TYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW 767
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Length = 749
Score = 70.1 bits (170), Expect = 8e-12 Identities = 28/41 (68%), Positives = 37/41 (90%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R+++ SW+G+Q+RGM QDLSWD AAK YEEV++AAKYQW Sbjct: 709 TYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW 749
>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1 Length = 810
Score = 69.3 bits (168), Expect = 1e-11 Identities = 28/41 (68%), Positives = 36/41 (87%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R +K+SW+G+Q RGM+QDLSWD AA+ YEEV+V AKYQW Sbjct: 770 TYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW 810
>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1 Length = 810
Score = 69.3 bits (168), Expect = 1e-11 Identities = 28/41 (68%), Positives = 36/41 (87%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R +K+SW+G+Q RGM+QDLSWD AA+ YEEV+V AKYQW Sbjct: 770 TYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW 810
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Length = 694
Score = 68.9 bits (167), Expect = 2e-11 Identities = 27/41 (65%), Positives = 36/41 (87%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R++K+SW+G+Q RGM QDLSWD AA+ YE+V+V AKYQW Sbjct: 654 TYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQW 694
>sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2 Length = 647
Score = 53.1 bits (126), Expect = 1e-06 Identities = 21/36 (58%), Positives = 30/36 (83%) Frame = -2
Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEV 470 AM TFR+ K SW+G+ +RGMT+D +WD AA+QYE++ Sbjct: 600 AMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQI 635
>sp|Q0DEC8|SSY1_ORYSJ Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1 Length = 641
Score = 50.4 bits (119), Expect = 6e-06 Identities = 20/47 (42%), Positives = 32/47 (68%) Frame = -2
Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQWRSM 437 A+ T+R+ K SW+G+ +RGM+ D +WD AA QYE++ ++W M Sbjct: 594 AISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQI-----FEWAFM 635
>sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1 Length = 641
Score = 50.4 bits (119), Expect = 6e-06 Identities = 20/47 (42%), Positives = 32/47 (68%) Frame = -2
Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQWRSM 437 A+ T+R+ K SW+G+ +RGM+ D +WD AA QYE++ ++W M Sbjct: 594 AISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQI-----FEWAFM 635
>sp|Q9FNF2|SSY1_ARATH Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1 Length = 652
Score = 50.1 bits (118), Expect = 8e-06 Identities = 20/41 (48%), Positives = 30/41 (73%) Frame = -2
Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446 T+R++K SW+G+ RGMT++ SW+ AA QYE+V +QW Sbjct: 608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQV-----FQW 643
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTL3 |
Definition |
tr|A9RTL3|A9RTL3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
44 |
Score (bit) |
83.2 |
E-value |
1.0e-14 |
Report |
|