BP913707
Clone id YMU001_000033_D04
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGCAGTTTTCTACTCCATCATGATATAAAAAGAGACAAAAATACACAGACAAAATAAAG
TGTTGATGCACAAATACAAAAAGTGTGCTACACCCAAACTGCAAAAAGCAAAAACTGCTT
TTTACGTTTCAGACCGCACAGTTTGGACCGTTCGAGTGCTACAAGAATAGTAGGTACCTA
CACAACCTAAATCACATTATTTACTGAACTAATCAAGCAGCCAATGTACAAGGGTACCTT
GCTGCAGTCCCATTTGAGCCACAAGGTAGCGTTGTAGCGTTAAATACGTTATACAACCCT
CTAGTGCACAAGAAGGGTTTCTGTACAGCTACTAGTGTGTTAGAGGCACCTGATTCCTCA
CACATCAAAAGCTTTGTATTGTAGCCCACTCTACATCATACAAGGTGACAGAAAATATAA
ACCCAGAAAATTTCCGCATAGATCGCCACTGATACTTCGCAGCAACCATCACTTCTTCAT
ATTGCTTGGCAGCCTGATCCCAACTCAGATCTTGCGTCATGCCTCTTTCTTGGATGCCCT
TCCAACTGTCTTTAAAATCGCGAAATGTCCACATCGCA
■■Homology search results ■■ -
sp_hit_id Q43093
Definition sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum
Align length 48
Score (bit) 78.2
E-value 3.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913707|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D04.
(578 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplasti... 78 3e-14
sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplas... 70 6e-12
sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic... 70 8e-12
sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic... 69 1e-11
sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic... 69 1e-11
sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic... 69 2e-11
sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplast... 53 1e-06
sp|Q0DEC8|SSY1_ORYSJ Soluble starch synthase 1, chloroplastic/am... 50 6e-06
sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1, chloroplastic/am... 50 6e-06
sp|Q9FNF2|SSY1_ARATH Soluble starch synthase, chloroplastic/amyl... 50 8e-06
sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/am... 45 2e-04
sp|A3CM04|GLGA_STRSV Glycogen synthase OS=Streptococcus sanguini... 42 0.003
sp|Q7V8F0|GLGA_PROMM Glycogen synthase OS=Prochlorococcus marinu... 41 0.004
sp|Q3AVF9|GLGA_SYNS9 Glycogen synthase OS=Synechococcus sp. (str... 40 0.008
sp|Q7U7I2|GLGA_SYNPX Glycogen synthase OS=Synechococcus sp. (str... 40 0.011
sp|Q8YVU5|GLGA1_ANASP Glycogen synthase 1 OS=Anabaena sp. (strai... 40 0.011
sp|Q3AKK1|GLGA_SYNSC Glycogen synthase OS=Synechococcus sp. (str... 39 0.014
sp|A5GBI7|GLGA_GEOUR Glycogen synthase OS=Geobacter uraniireduce... 39 0.014
sp|Q3M3R4|GLGA2_ANAVT Glycogen synthase 2 OS=Anabaena variabilis... 39 0.014
sp|Q5N1P1|GLGA_SYNP6 Glycogen synthase OS=Synechococcus sp. (str... 39 0.019
sp|Q935Y7|GLGA_SYNE7 Glycogen synthase OS=Synechococcus elongatu... 39 0.019
sp|Q7V275|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinu... 39 0.019
sp|Q0I9Y8|GLGA_SYNS3 Glycogen synthase OS=Synechococcus sp. (str... 39 0.025
sp|A8G3X5|GLGA_PROM2 Glycogen synthase OS=Prochlorococcus marinu... 39 0.025
sp|A3PBY3|GLGA_PROM0 Glycogen synthase OS=Prochlorococcus marinu... 39 0.025
sp|Q2IM81|GLGA_ANADE Glycogen synthase OS=Anaeromyxobacter dehal... 39 0.025
sp|Q113E3|GLGA_TRIEI Glycogen synthase OS=Trichodesmium erythrae... 38 0.042
sp|A2CAW5|GLGA_PROM3 Glycogen synthase OS=Prochlorococcus marinu... 38 0.042
sp|A8AYH0|GLGA_STRGC Glycogen synthase OS=Streptococcus gordonii... 37 0.055
sp|Q8E079|GLGA_STRA5 Glycogen synthase OS=Streptococcus agalacti... 37 0.055

>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2,
chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1
Length = 752

Score = 78.2 bits (191), Expect = 3e-14
Identities = 34/48 (70%), Positives = 42/48 (87%), Gaps = 4/48 (8%)
Frame = -2

Query: 577 AMW----TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
A+W T++D+K SW+GIQERGM+QDLSWD AA+QYEEV+VAAKYQW
Sbjct: 705 ALWNCLLTYKDYKKSWEGIQERGMSQDLSWDNAAQQYEEVLVAAKYQW 752


>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2,
chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2
PE=1 SV=3
Length = 767

Score = 70.5 bits (171), Expect = 6e-12
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K SW+GIQ R MTQDLSWD AA+ YEEV++AAKYQW
Sbjct: 727 TYREYKKSWEGIQTRCMTQDLSWDNAAQNYEEVLIAAKYQW 767


>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1,
chloroplastic/amyloplastic OS=Oryza sativa subsp.
japonica GN=SSII-1 PE=2 SV=2
Length = 749

Score = 70.1 bits (170), Expect = 8e-12
Identities = 28/41 (68%), Positives = 37/41 (90%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R+++ SW+G+Q+RGM QDLSWD AAK YEEV++AAKYQW
Sbjct: 709 TYRNYRTSWEGLQKRGMMQDLSWDNAAKLYEEVLLAAKYQW 749


>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3,
chloroplastic/amyloplastic OS=Oryza sativa subsp.
japonica GN=SSII-3 PE=1 SV=1
Length = 810

Score = 69.3 bits (168), Expect = 1e-11
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R +K+SW+G+Q RGM+QDLSWD AA+ YEEV+V AKYQW
Sbjct: 770 TYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW 810


>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3,
chloroplastic/amyloplastic OS=Oryza sativa subsp. indica
GN=SSII-3 PE=1 SV=1
Length = 810

Score = 69.3 bits (168), Expect = 1e-11
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R +K+SW+G+Q RGM+QDLSWD AA+ YEEV+V AKYQW
Sbjct: 770 TYRKYKESWRGLQVRGMSQDLSWDHAAELYEEVLVKAKYQW 810


>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2,
chloroplastic/amyloplastic OS=Oryza sativa subsp.
japonica GN=SSII-2 PE=2 SV=2
Length = 694

Score = 68.9 bits (167), Expect = 2e-11
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K+SW+G+Q RGM QDLSWD AA+ YE+V+V AKYQW
Sbjct: 654 TYRNYKESWRGLQARGMAQDLSWDHAAELYEDVLVKAKYQW 694


>sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplastic
OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2
Length = 647

Score = 53.1 bits (126), Expect = 1e-06
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEV 470
AM TFR+ K SW+G+ +RGMT+D +WD AA+QYE++
Sbjct: 600 AMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQI 635


>sp|Q0DEC8|SSY1_ORYSJ Soluble starch synthase 1,
chloroplastic/amyloplastic OS=Oryza sativa subsp.
japonica GN=Os06g0160700 PE=1 SV=1
Length = 641

Score = 50.4 bits (119), Expect = 6e-06
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQWRSM 437
A+ T+R+ K SW+G+ +RGM+ D +WD AA QYE++ ++W M
Sbjct: 594 AISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQI-----FEWAFM 635


>sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1,
chloroplastic/amyloplastic OS=Oryza sativa subsp. indica
GN=OsI_021017 PE=2 SV=1
Length = 641

Score = 50.4 bits (119), Expect = 6e-06
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQWRSM 437
A+ T+R+ K SW+G+ +RGM+ D +WD AA QYE++ ++W M
Sbjct: 594 AISTYREHKSSWEGLMKRGMSSDFTWDHAASQYEQI-----FEWAFM 635


>sp|Q9FNF2|SSY1_ARATH Soluble starch synthase,
chloroplastic/amyloplastic OS=Arabidopsis thaliana
GN=At5g24300 PE=2 SV=1
Length = 652

Score = 50.1 bits (118), Expect = 8e-06
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K SW+G+ RGMT++ SW+ AA QYE+V +QW
Sbjct: 608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQV-----FQW 643


tr_hit_id A9RTL3
Definition tr|A9RTL3|A9RTL3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 83.2
E-value 1.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913707|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D04.
(578 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RTL3|A9RTL3_PHYPA Predicted protein OS=Physcomitrella paten... 83 1e-14
tr|A9THX7|A9THX7_PHYPA Predicted protein OS=Physcomitrella paten... 81 4e-14
tr|A9RJB5|A9RJB5_PHYPA Predicted protein OS=Physcomitrella paten... 80 1e-13
tr|Q75T41|Q75T41_PHAVU Starch synthase II-2 OS=Phaseolus vulgari... 75 2e-12
tr|Q9MAC8|Q9MAC8_ARATH Putative glycogen synthase OS=Arabidopsis... 74 8e-12
tr|Q1L5V9|Q1L5V9_NICLS Starch synthase isoform 2 (Fragment) OS=N... 74 8e-12
tr|Q0H7E2|Q0H7E2_AMACR Starch synthase II OS=Amaranthus cruentus... 73 1e-11
tr|Q75T79|Q75T79_PHAVU Starch synthase II OS=Phaseolus vulgaris ... 72 2e-11
tr|Q9LEE2|Q9LEE2_WHEAT Starch synthase IIa-3 (Starch synthase II... 72 2e-11
tr|A9YWU0|A9YWU0_SORBI Starch synthase IIc OS=Sorghum bicolor PE... 72 2e-11
tr|O65365|O65365_IPOBA Starch synthase OS=Ipomoea batatas PE=2 SV=1 72 3e-11
tr|A9YWT9|A9YWT9_WHEAT Starch synthase IIc OS=Triticum aestivum ... 72 3e-11
tr|O64926|O64926_CHLRE Soluble starch synthase OS=Chlamydomonas ... 71 4e-11
tr|B2Z9Y0|B2Z9Y0_SORBI Starch synthase IIb OS=Sorghum bicolor PE... 71 4e-11
tr|A8JJB6|A8JJB6_CHLRE Predicted protein (Fragment) OS=Chlamydom... 71 4e-11
tr|A8IRJ0|A8IRJ0_CHLRE Soluble starch synthase II OS=Chlamydomon... 71 4e-11
tr|A7PMX5|A7PMX5_VITVI Chromosome chr14 scaffold_21, whole genom... 71 4e-11
tr|Q9SPM9|Q9SPM9_WHEAT Starch synthase IIA OS=Triticum aestivum ... 71 5e-11
tr|Q9M466|Q9M466_WHEAT Starch synthase IIa-1 OS=Triticum aestivu... 71 5e-11
tr|Q9LEE3|Q9LEE3_WHEAT Starch synthase IIa-2 (Starch synthase II... 71 5e-11
tr|Q8H1Y9|Q8H1Y9_AEGTA Starch synthase II OS=Aegilops tauschii P... 71 5e-11
tr|Q2WGB1|Q2WGB1_WHEAT Starch synthase II-D OS=Triticum aestivum... 71 5e-11
tr|O24398|O24398_WHEAT Starch synthase (Fragment) OS=Triticum ae... 71 5e-11
tr|B3SRP3|B3SRP3_MANES Starch synthase isoform II OS=Manihot esc... 71 5e-11
tr|Q8H1Y8|Q8H1Y8_HORVD Starch synthase II OS=Hordeum vulgare var... 70 6e-11
tr|Q8H1Y7|Q8H1Y7_HORVD Starch synthase II OS=Hordeum vulgare var... 70 6e-11
tr|B8BH25|B8BH25_ORYSI Putative uncharacterized protein OS=Oryza... 70 8e-11
tr|Q6XLL0|Q6XLL0_COLES Soluble starch synthase II OS=Colocasia e... 70 1e-10
tr|B7ESH5|B7ESH5_ORYSJ cDNA clone:J033076P09, full insert sequen... 69 1e-10
tr|Q0DXM0|Q0DXM0_ORYSJ Os02g0744700 protein (Fragment) OS=Oryza ... 69 2e-10

>tr|A9RTL3|A9RTL3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_177976 PE=4 SV=1
Length = 492

Score = 83.2 bits (204), Expect = 1e-14
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
A+WT+RDFK SWKGIQ+RGM+QDLSWD AA+QYEEV++AAKY W
Sbjct: 449 AIWTYRDFKSSWKGIQQRGMSQDLSWDHAAQQYEEVLLAAKYTW 492


>tr|A9THX7|A9THX7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_222462 PE=4 SV=1
Length = 492

Score = 81.3 bits (199), Expect = 4e-14
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
AMWT+ DFK SW+GIQ+RGM+QDLSWD AA+QYEEV++AAKY W
Sbjct: 449 AMWTYHDFKTSWRGIQQRGMSQDLSWDHAAQQYEEVLLAAKYTW 492


>tr|A9RJB5|A9RJB5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_202950 PE=4 SV=1
Length = 492

Score = 79.7 bits (195), Expect = 1e-13
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = -2

Query: 577 AMWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
AMWT+ DFK SWKGIQ+RGM+Q+LSWD AA+QYEEV++AAKY W
Sbjct: 449 AMWTYLDFKTSWKGIQQRGMSQNLSWDHAAQQYEEVLLAAKYTW 492


>tr|Q75T41|Q75T41_PHAVU Starch synthase II-2 OS=Phaseolus vulgaris
GN=pvss22 PE=2 SV=1
Length = 738

Score = 75.5 bits (184), Expect = 2e-12
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = -2

Query: 574 MWTFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
+ TF+ FK SW+GIQ RGM QDLSWD AA+QYEEV+VAAKYQW
Sbjct: 696 LMTFKQFKQSWEGIQRRGMMQDLSWDNAAQQYEEVLVAAKYQW 738


>tr|Q9MAC8|Q9MAC8_ARATH Putative glycogen synthase OS=Arabidopsis
thaliana GN=At3g01180/T4P13.13 PE=2 SV=1
Length = 792

Score = 73.6 bits (179), Expect = 8e-12
Identities = 29/41 (70%), Positives = 38/41 (92%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K+SW+G+Q RGMTQDLSWD AA++YEEV+VAAKY W
Sbjct: 752 TYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAKYHW 792


>tr|Q1L5V9|Q1L5V9_NICLS Starch synthase isoform 2 (Fragment)
OS=Nicotiana langsdorffii x Nicotiana sanderae GN=SS2
PE=2 SV=1
Length = 207

Score = 73.6 bits (179), Expect = 8e-12
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K SW+G+Q RGMTQDLSWD AA YEEV+VAAKYQW
Sbjct: 167 TYREYKQSWEGLQRRGMTQDLSWDNAAHNYEEVLVAAKYQW 207


>tr|Q0H7E2|Q0H7E2_AMACR Starch synthase II OS=Amaranthus cruentus
GN=SsII PE=2 SV=1
Length = 809

Score = 72.8 bits (177), Expect = 1e-11
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R +K+SW+G+Q RGMTQDLSWD AA+ YEEV+VAAKYQW
Sbjct: 769 TYRQYKESWEGLQTRGMTQDLSWDHAAEIYEEVLVAAKYQW 809


>tr|Q75T79|Q75T79_PHAVU Starch synthase II OS=Phaseolus vulgaris
GN=pvss2 PE=2 SV=1
Length = 724

Score = 72.4 bits (176), Expect = 2e-11
Identities = 29/41 (70%), Positives = 38/41 (92%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+R++K SW+G+Q+RGMT DLSWD AA+QYEEV++AAKYQW
Sbjct: 684 TYREYKKSWEGLQKRGMTLDLSWDSAAQQYEEVLLAAKYQW 724


>tr|Q9LEE2|Q9LEE2_WHEAT Starch synthase IIa-3 (Starch synthase II-B)
OS=Triticum aestivum GN=wSs2a-3 PE=2 SV=1
Length = 798

Score = 72.0 bits (175), Expect = 2e-11
Identities = 28/41 (68%), Positives = 37/41 (90%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
T+RD+K+SW+G+QERGM+QD SW+ AAK YE+V+V AKYQW
Sbjct: 758 TYRDYKESWRGLQERGMSQDFSWEHAAKLYEDVLVKAKYQW 798


>tr|A9YWU0|A9YWU0_SORBI Starch synthase IIc OS=Sorghum bicolor PE=2
SV=1
Length = 765

Score = 72.0 bits (175), Expect = 2e-11
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2

Query: 568 TFRDFKDSWKGIQERGMTQDLSWDQAAKQYEEVMVAAKYQW 446
TFR+++ SW+GIQ RGM QDLSWD AAK YEEV++AAKYQW
Sbjct: 725 TFRNYRSSWEGIQRRGMMQDLSWDNAAKLYEEVLLAAKYQW 765