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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913709
Clone id YMU001_000033_D06
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTGATTGTGTGTATTTCTTTGCACACAAATTAGCCAACTTGGTATTGCAGGTCG
AGACATAGCTGGCAAAGCCACTCTTGTACTACAATTTGCCCTGGGATCGATAAATAATCC
TGTTGAGACATGAAAAATCCTCAATTACAAATGACATCATGGGAATACTCGCCCCAAAAG
GCCGGTAAAGTTCCTTGACCAAACCAATCCCGCACTTCTACATCTACGCCTACTCTGCAG
GCTTACAAAACTTGATGGAATACCATGCCGCGGTTATACAGAGACAACTCTCAAGGCATG
TCACGATTTTTTCGCACAGCTCCCACTTATTGTTATAAAAATGAACTCTACAAGTCACTA
TATAACCCTATCGTAGGCCCTAGCCTTGAAGCTTCAGTTCTGAAAAGCCAGGCACATCAC
CATTGGAATTCAGGATTGCAGGAGCATAGGCCAGCTTCAACTTTTGGCAGTAAGCATGGT
TCGCACTCCCTTGCGAAGAAGAGCT
■■Homology search results ■■ -
sp_hit_id Q3YVF5
Definition sp|Q3YVF5|XERC_SHISS Tyrosine recombinase xerC OS=Shigella sonnei (strain Ss046)
Align length 33
Score (bit) 30.8
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913709|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D06.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3YVF5|XERC_SHISS Tyrosine recombinase xerC OS=Shigella sonne...    31   3.8  
sp|Q7ZAL9|XERC_SHIFL Tyrosine recombinase xerC OS=Shigella flexn...    31   3.8  
sp|Q0SZ02|XERC_SHIF8 Tyrosine recombinase xerC OS=Shigella flexn...    31   3.8  
sp|Q329Y7|XERC_SHIDS Tyrosine recombinase xerC OS=Shigella dysen...    31   3.8  
sp|Q31UH7|XERC_SHIBS Tyrosine recombinase xerC OS=Shigella boydi...    31   3.8  
sp|Q1R4C3|XERC_ECOUT Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|P0A8P6|XERC_ECOLI Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|B1IW93|XERC_ECOLC Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|P0A8P7|XERC_ECOL6 Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|Q0TAR4|XERC_ECOL5 Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|A1AHX9|XERC_ECOK1 Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|A8A6R9|XERC_ECOHS Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|Q8X4T6|XERC_ECO57 Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|A7ZU16|XERC_ECO24 Tyrosine recombinase xerC OS=Escherichia co...    31   3.8  
sp|Q7L7V1|DHX32_HUMAN Putative pre-mRNA-splicing factor ATP-depe...    30   8.3  
sp|P05475|YKP9_KLULA Uncharacterized killer plasmid pGKl-2 prote...    30   8.4  

>sp|Q3YVF5|XERC_SHISS Tyrosine recombinase xerC OS=Shigella sonnei
           (strain Ss046) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q7ZAL9|XERC_SHIFL Tyrosine recombinase xerC OS=Shigella flexneri
           GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q0SZ02|XERC_SHIF8 Tyrosine recombinase xerC OS=Shigella flexneri
           serotype 5b (strain 8401) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q329Y7|XERC_SHIDS Tyrosine recombinase xerC OS=Shigella
           dysenteriae serotype 1 (strain Sd197) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q31UH7|XERC_SHIBS Tyrosine recombinase xerC OS=Shigella boydii
           serotype 4 (strain Sb227) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q1R4C3|XERC_ECOUT Tyrosine recombinase xerC OS=Escherichia coli
           (strain UTI89 / UPEC) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|P0A8P6|XERC_ECOLI Tyrosine recombinase xerC OS=Escherichia coli
           (strain K12) GN=xerC PE=1 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|B1IW93|XERC_ECOLC Tyrosine recombinase xerC OS=Escherichia coli
           (strain ATCC 8739 / DSM 1576 / Crooks) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|P0A8P7|XERC_ECOL6 Tyrosine recombinase xerC OS=Escherichia coli
           O6 GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263


>sp|Q0TAR4|XERC_ECOL5 Tyrosine recombinase xerC OS=Escherichia coli
           O6:K15:H31 (strain 536 / UPEC) GN=xerC PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 493 QGSANHAYCQKLKLAYAPAILNSNGDVPGFSEL 395
           QG  NH +  KL+ ++A  +L S+GD+ G  EL
Sbjct: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263
tr_hit_id A6R8Y2
Definition tr|A6R8Y2|A6R8Y2_AJECN Predicted protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 104
Score (bit) 36.6
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913709|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D06.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6R8Y2|A6R8Y2_AJECN Predicted protein OS=Ajellomyces capsulat...    37   0.71 

>tr|A6R8Y2|A6R8Y2_AJECN Predicted protein OS=Ajellomyces capsulata
           (strain NAm1 / WU24) GN=HCAG_06773 PE=4 SV=1
          Length = 1913

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
 Frame = +1

Query: 193 P*PNQSRTSTSTPTLQAYKT*WNTMPRLYRDNSQGMSRFFRTAPTYCYKNELYKSLYNPI 372
           P P  +RT+ + PT+ AYK    T+    R    G+++ FRT P    + ++  S+ N +
Sbjct: 130 PVPQSARTTKTQPTVTAYKDRAVTV----RLKDHGIAQRFRTLPAIKIRQQVETSIKNHV 185

Query: 373 VGPSL-------------------EASVLKSQAHHHWNSGLQEH 447
           V  S+                    A  +K + +  W SGL EH
Sbjct: 186 VTKSVAVVAAHQLKSGDIQIFTSSTAEAVKLKQNREWVSGLGEH 229