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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913711
Clone id YMU001_000033_D09
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTGTTGAAAAACTACCTCAACTATTAGATTACAAAGATTACATGGAG
GACATGCTCTTGCAAGACTCTGTAGGCTTTTCTACAAATAGAACCCTGCATTGCAATGCT
GGTGGTCCTCCAAACCTTTTATACAATTGATTCTCAACCGTGTATGTGCTACTGCACGTA
TGTCGAGGAGATCTCTGTTTTAATAGATATCCTCCCTATAGAGCTCGGCCAAAATTGATG
GCAACAGTCATACATGAGTTGCTCACTTCTTCCATCCCGATGCATGGTCCTTATCAGGCA
ACCCCGCAACAAGTTCGAGGAGCTATAGACCAATATGAGGCCTTCACAGAAACCATGTCG
AAAGCATTACATTACAGCCCAAGTTGCTCAACATGCACAAGCTAAAAATCTGTCAACCAA
AACCGAATCCTTCGCTACCCTCATGGATCGCAAGCAGCAATCTCTCTTGTAACTGCTGCT
TTGATGAGTACTCCGGAAGATCAAGCTGGTTGAAGCA
■■Homology search results ■■ -
sp_hit_id Q8GY23
Definition sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana
Align length 33
Score (bit) 66.2
E-value 8.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913711|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D09.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabido...    66   8e-11
sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabido...    64   4e-10
sp|O13834|PTR1_SCHPO E3 ubiquitin-protein ligase ptr1 OS=Schizos...    54   3e-07
sp|Q756G2|TOM1_ASHGO Probable E3 ubiquitin-protein ligase TOM1 O...    48   3e-05
sp|P51593|HUWE1_RAT E3 ubiquitin-protein ligase HUWE1 (Fragment)...    47   5e-05
sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus m...    47   5e-05
sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo ...    47   5e-05
sp|Q03280|TOM1_YEAST E3 ubiquitin-protein ligase TOM1 OS=Sacchar...    46   1e-04
sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1...    44   3e-04
sp|Q9H0M0|WWP1_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP1...    44   3e-04
sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin-protein ligase TOM1-like OS=Ne...    44   3e-04
sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus mu...    44   3e-04
sp|Q96J02|ITCH_HUMAN E3 ubiquitin-protein ligase Itchy homolog O...    44   3e-04
sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2...    44   4e-04
sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2...    44   4e-04
sp|Q8CHG5|K0317_MOUSE Protein KIAA0317 OS=Mus musculus GN=Kiaa03...    42   0.002
sp|O15033|K0317_HUMAN Protein KIAA0317 OS=Homo sapiens GN=KIAA03...    42   0.002
sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenop...    42   0.002
sp|Q6DCL5|HACE1_XENLA E3 ubiquitin-protein ligase HACE1 OS=Xenop...    42   0.002
sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus m...    42   0.002
sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo ...    42   0.002
sp|Q9UTG2|PUB2_SCHPO E3 ubiquitin-protein ligase pub2 OS=Schizos...    41   0.003
sp|O14326|PUB3_SCHPO E3 ubiquitin-protein ligase pub3 OS=Schizos...    40   0.005
sp|Q05086|UBE3A_HUMAN Ubiquitin-protein ligase E3A OS=Homo sapie...    40   0.008
sp|Q5RD78|HECD2_PONAB Probable E3 ubiquitin-protein ligase HECTD...    39   0.010
sp|Q5U5R9|HECD2_HUMAN Probable E3 ubiquitin-protein ligase HECTD...    39   0.010
sp|Q9VVI3|NEDD4_DROME E3 ubiquitin-protein ligase Nedd-4 OS=Dros...    39   0.018
sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Droso...    38   0.023
sp|P40985|HUL4_YEAST Probable E3 ubiquitin-protein ligase HUL4 O...    38   0.023
sp|Q8CDU6|HECD2_MOUSE Probable E3 ubiquitin-protein ligase HECTD...    38   0.023

>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis
            thaliana GN=UPL1 PE=1 SV=3
          Length = 3681

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGF 401
            CFNQLDLPEY SK+QLQERLLLAIHE SEGFGF
Sbjct: 3648 CFNQLDLPEYQSKEQLQERLLLAIHEASEGFGF 3680


>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis
            thaliana GN=UPL2 PE=1 SV=2
          Length = 3658

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGF 401
            CFNQLDLPEY SK+Q+QERLLLAIHE +EGFGF
Sbjct: 3625 CFNQLDLPEYQSKEQVQERLLLAIHEANEGFGF 3657


>sp|O13834|PTR1_SCHPO E3 ubiquitin-protein ligase ptr1
            OS=Schizosaccharomyces pombe GN=ptr1 PE=1 SV=1
          Length = 3227

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGF 401
            CFNQLDLPEY + +QL+  LL AI+EGSEGFGF
Sbjct: 3194 CFNQLDLPEYDTYEQLRSMLLTAINEGSEGFGF 3226


>sp|Q756G2|TOM1_ASHGO Probable E3 ubiquitin-protein ligase TOM1
            OS=Ashbya gossypii GN=TOM1 PE=3 SV=1
          Length = 3258

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
            CFNQLDLP Y S + L+  LLLAI+EG EGFG
Sbjct: 3225 CFNQLDLPAYDSYETLRGSLLLAINEGHEGFG 3256


>sp|P51593|HUWE1_RAT E3 ubiquitin-protein ligase HUWE1 (Fragment)
           OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2
          Length = 322

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
           CFNQLDLP Y S ++L+  LLLAI E SEGFG
Sbjct: 289 CFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 320


>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus
            musculus GN=Huwe1 PE=1 SV=4
          Length = 4377

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
            CFNQLDLP Y S ++L+  LLLAI E SEGFG
Sbjct: 4344 CFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4375


>sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo
            sapiens GN=HUWE1 PE=1 SV=3
          Length = 4374

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
            CFNQLDLP Y S ++L+  LLLAI E SEGFG
Sbjct: 4341 CFNQLDLPAYESFEKLRHMLLLAIQECSEGFG 4372


>sp|Q03280|TOM1_YEAST E3 ubiquitin-protein ligase TOM1
            OS=Saccharomyces cerevisiae GN=TOM1 PE=1 SV=1
          Length = 3268

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
            CFNQL+LP Y S + L+  LLLAI+EG EGFG
Sbjct: 3235 CFNQLNLPPYESYETLRGSLLLAINEGHEGFG 3266


>sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1
           OS=Mus musculus GN=Wwp1 PE=1 SV=2
          Length = 918

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
           CFN+LDLP Y S +QL+E+LL AI E +EGFG
Sbjct: 886 CFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 916


>sp|Q9H0M0|WWP1_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP1
           OS=Homo sapiens GN=WWP1 PE=1 SV=1
          Length = 922

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFG 404
           CFN+LDLP Y S +QL+E+LL AI E +EGFG
Sbjct: 890 CFNRLDLPPYKSYEQLKEKLLFAIEE-TEGFG 920
tr_hit_id A7Q998
Definition tr|A7Q998|A7Q998_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera
Align length 34
Score (bit) 70.1
E-value 5.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913711|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D09.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q998|A7Q998_VITVI Chromosome chr19 scaffold_66, whole genom...    70   5e-11
tr|A5ATX6|A5ATX6_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|Q6K3Y7|Q6K3Y7_ORYSJ Putative ubiquitin-protein ligase 1 OS=Or...    69   1e-10
tr|A3BWI1|A3BWI1_ORYSJ Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|Q2QSH6|Q2QSH6_ORYSJ E3 ubiquitin protein ligase UPL1, putativ...    68   3e-10
tr|Q0INM5|Q0INM5_ORYSJ Os12g0428600 protein OS=Oryza sativa subs...    68   3e-10
tr|B8BPD0|B8BPD0_ORYSI Putative uncharacterized protein OS=Oryza...    68   3e-10
tr|A3CGV1|A3CGV1_ORYSJ Putative uncharacterized protein OS=Oryza...    68   3e-10
tr|A9SYT0|A9SYT0_PHYPA Predicted protein (Fragment) OS=Physcomit...    65   1e-09
tr|A7NUJ7|A7NUJ7_VITVI Chromosome chr18 scaffold_1, whole genome...    65   2e-09
tr|A5BAJ1|A5BAJ1_VITVI Putative uncharacterized protein OS=Vitis...    65   2e-09
tr|B8BDE1|B8BDE1_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|A8HPC8|A8HPC8_CHLRE Predicted protein OS=Chlamydomonas reinha...    57   5e-07
tr|B6K591|B6K591_SCHJP HECT domain containing protein OS=Schizos...    57   5e-07
tr|Q1JTI3|Q1JTI3_TOXGO Ubiquitin-protein ligase 1, putative OS=T...    56   8e-07
tr|B6KUI7|B6KUI7_TOXGO Ubiquitin-transferase domain-containing p...    56   8e-07
tr|A9UUJ4|A9UUJ4_MONBE Predicted protein OS=Monosiga brevicollis...    56   1e-06
tr|B6K2A3|B6K2A3_SCHJP HECT domain-containing protein OS=Schizos...    55   1e-06
tr|Q8IB94|Q8IB94_PLAF7 Ubiquitin-protein ligase 1, putative OS=P...    54   3e-06
tr|B3L128|B3L128_PLAKH Ubiquitin-protein ligase 1, putative OS=P...    54   3e-06
tr|A5K5J0|A5K5J0_PLAVI Putative uncharacterized protein OS=Plasm...    54   3e-06
tr|Q00WM5|Q00WM5_OSTTA E3 ubiquitin protein ligase UPL1 (ISS) OS...    54   4e-06
tr|A4S6X1|A4S6X1_OSTLU Predicted protein OS=Ostreococcus lucimar...    54   4e-06
tr|Q7RQR2|Q7RQR2_PLAYO HECT-domain, putative (Fragment) OS=Plasm...    54   4e-06
tr|Q4YSW6|Q4YSW6_PLABE Putative uncharacterized protein OS=Plasm...    54   4e-06
tr|Q4XCP3|Q4XCP3_PLACH Putative uncharacterized protein (Fragmen...    54   4e-06
tr|A8Q4D0|A8Q4D0_MALGO Putative uncharacterized protein OS=Malas...    53   7e-06
tr|A8N5V6|A8N5V6_COPC7 Putative uncharacterized protein OS=Copri...    53   9e-06
tr|A0CRK7|A0CRK7_PARTE Chromosome undetermined scaffold_25, whol...    52   2e-05
tr|A0C570|A0C570_PARTE Chromosome undetermined scaffold_15, whol...    52   2e-05

>tr|A7Q998|A7Q998_VITVI Chromosome chr19 scaffold_66, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033390001
           PE=4 SV=1
          Length = 464

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
           CFNQLDLPEYSSK+QLQERLLLAIHE SEGFGFG
Sbjct: 431 CFNQLDLPEYSSKEQLQERLLLAIHEASEGFGFG 464


>tr|A5ATX6|A5ATX6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042363 PE=4 SV=1
          Length = 342

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
           CFNQLDLPEYSSK+QLQERLLLAIHE SEGFGFG
Sbjct: 309 CFNQLDLPEYSSKEQLQERLLLAIHEASEGFGFG 342


>tr|Q6K3Y7|Q6K3Y7_ORYSJ Putative ubiquitin-protein ligase 1 OS=Oryza
            sativa subsp. japonica GN=P0574F11.30 PE=4 SV=1
          Length = 3716

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLPEYSSK+QL+ERLLLAIHE SEGFGFG
Sbjct: 3683 CFNQLDLPEYSSKEQLEERLLLAIHEASEGFGFG 3716


>tr|A3BWI1|A3BWI1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_027403 PE=4 SV=1
          Length = 3647

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLPEYSSK+QL+ERLLLAIHE SEGFGFG
Sbjct: 3614 CFNQLDLPEYSSKEQLEERLLLAIHEASEGFGFG 3647


>tr|Q2QSH6|Q2QSH6_ORYSJ E3 ubiquitin protein ligase UPL1, putative,
            expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g24080 PE=4 SV=2
          Length = 1000

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLPEY+SK+QLQERLLLAIHE +EGFGFG
Sbjct: 967  CFNQLDLPEYTSKEQLQERLLLAIHEANEGFGFG 1000


>tr|Q0INM5|Q0INM5_ORYSJ Os12g0428600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0428600 PE=4 SV=1
          Length = 761

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
           CFNQLDLPEY+SK+QLQERLLLAIHE +EGFGFG
Sbjct: 728 CFNQLDLPEYTSKEQLQERLLLAIHEANEGFGFG 761


>tr|B8BPD0|B8BPD0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38149 PE=4 SV=1
          Length = 3619

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLPEY+SK+QLQERLLLAIHE +EGFGFG
Sbjct: 3586 CFNQLDLPEYTSKEQLQERLLLAIHEANEGFGFG 3619


>tr|A3CGV1|A3CGV1_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_034523 PE=4 SV=1
          Length = 3788

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLPEY+SK+QLQERLLLAIHE +EGFGFG
Sbjct: 3755 CFNQLDLPEYTSKEQLQERLLLAIHEANEGFGFG 3788


>tr|A9SYT0|A9SYT0_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_137606 PE=4 SV=1
          Length = 3732

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 28/34 (82%), Positives = 33/34 (97%)
 Frame = -1

Query: 499  CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
            CFNQLDLP+Y++K+QLQ+RLLLAIHE SEGFGFG
Sbjct: 3699 CFNQLDLPDYATKEQLQDRLLLAIHEASEGFGFG 3732


>tr|A7NUJ7|A7NUJ7_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015074001
           PE=4 SV=1
          Length = 472

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/34 (85%), Positives = 31/34 (91%)
 Frame = -1

Query: 499 CFNQLDLPEYSSKQQLQERLLLAIHEGSEGFGFG 398
           CFNQLDLPEY SKQ L+ERLLLAIHE +EGFGFG
Sbjct: 439 CFNQLDLPEYPSKQHLEERLLLAIHEANEGFGFG 472