NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913713
Clone id YMU001_000033_D11
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGAACTGCGCATTAAAAGAAACAACAACAGAAAGGTTGCTTAACCGGGGTGGCTCCCCAG
CTCAAGTGGTAAGCTGGAGAAGCTCTTACAACACTGCTCATTTATGAAACAGGCTGAAGA
CCTGCATACAACAGTGAGTATCTCACTTTGTTTTTAAGTGTAATGATGTTACAGTCCATT
GAGCAGCCAGATGAATAGTCAAAGCATTCTTTACCTTTGCCATCTTTGAAGGAGGCCACC
TACCCTTCTTCCGTAAGTGACGTTTCCTTACAAGCCTCTTTCTTCGCAACTCTGCACGTT
TTGCCTTCTTTTTCAAAAGGTCAGACTCAAGCTGTAACTTGGACAACTCATTCACAGGAG
CACCCTCTTCTGCTTTTCCAGAAGATTCTTCCCTCAATGCTTCTGCAACCGCATGGGTAA
CGATCAAGTTGCACTCCTTTCGTGACAGCACAGCTACGAGTCCAGATGACAAGCATGAAG
GCATAGTAGCTTCCCTCAAAGCGTCCATCTT
■■Homology search results ■■ -
sp_hit_id Q96SF2
Definition sp|Q96SF2|TCPQM_HUMAN Putative T-complex protein 1 subunit theta-like 2 OS=Homo sapiens
Align length 107
Score (bit) 37.4
E-value 0.041
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913713|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D11.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96SF2|TCPQM_HUMAN Putative T-complex protein 1 subunit theta...    37   0.041
sp|A6NM43|TCPQL_HUMAN Putative T-complex protein 1 subunit theta...    35   0.16 
sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus GN=Dcc P...    31   2.9  
sp|O79555|NU4M_DINSE NADH-ubiquinone oxidoreductase chain 4 OS=D...    30   8.5  
sp|Q66GP9|NOS1_ARATH Nitric oxide synthase 1 OS=Arabidopsis thal...    30   8.5  
sp|Q9L6N1|METE_SALTY 5-methyltetrahydropteroyltriglutamate--homo...    30   8.5  
sp|Q8Z3B6|METE_SALTI 5-methyltetrahydropteroyltriglutamate--homo...    30   8.5  
sp|A9MY90|METE_SALPB 5-methyltetrahydropteroyltriglutamate--homo...    30   8.5  
sp|Q5PKP9|METE_SALPA 5-methyltetrahydropteroyltriglutamate--homo...    30   8.5  
sp|Q57HP2|METE_SALCH 5-methyltetrahydropteroyltriglutamate--homo...    30   8.5  

>sp|Q96SF2|TCPQM_HUMAN Putative T-complex protein 1 subunit
           theta-like 2 OS=Homo sapiens GN=CCT8L2 PE=5 SV=1
          Length = 557

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 33/107 (30%), Positives = 49/107 (45%)
 Frame = +1

Query: 34  GCLTGVAPQLKW*AGEALTTLLIYETG*RPAYNSEYLTLFLSVMMLQSIEQPDE*SKHSL 213
           GC T +   L+    E     L+ E G   A NS   T F+ ++    +EQ ++  K  L
Sbjct: 71  GCATAILRALEL---EHPAAWLLREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGL 127

Query: 214 PLPSLKEATYPSSVSDVSLQASFFATLHVLPSFSKGQTQAVTWTTHS 354
           P P L+EA Y ++ ++V       ATL  L   S G  +  +W  HS
Sbjct: 128 PRPQLREA-YATATAEV------LATLPSLAIQSLGPLEDPSWALHS 167


>sp|A6NM43|TCPQL_HUMAN Putative T-complex protein 1 subunit
           theta-like 1 OS=Homo sapiens GN=CCT8L1 PE=5 SV=1
          Length = 557

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 32/107 (29%), Positives = 48/107 (44%)
 Frame = +1

Query: 34  GCLTGVAPQLKW*AGEALTTLLIYETG*RPAYNSEYLTLFLSVMMLQSIEQPDE*SKHSL 213
           GC T +   L+    E     L+ E     A NS   T F+ ++    +EQ ++  K  L
Sbjct: 71  GCATAILRALEL---EHPAAWLLREAAQTQAENSGDGTAFVVLLTEALLEQAEQLLKFGL 127

Query: 214 PLPSLKEATYPSSVSDVSLQASFFATLHVLPSFSKGQTQAVTWTTHS 354
           P P L+EA Y ++ ++V       ATL  L   S G  +  +W  HS
Sbjct: 128 PRPQLREA-YATATAEV------LATLPSLAIQSLGPLEDPSWALHS 167


>sp|P70211|DCC_MOUSE Netrin receptor DCC OS=Mus musculus GN=Dcc PE=1
            SV=1
          Length = 1447

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
 Frame = +1

Query: 208  SLPLPSLKEATYPSSVSD---------VSLQASFFATLHVLPSFSKGQTQAVTWTTHSQE 360
            ++P+P+L+ A YP  +            +L+   F TL V   F  G+TQ+V+    +Q+
Sbjct: 1250 AIPVPTLESAQYPGILPSPTCGYPHPQFTLRPVPFPTLSVDRGFGAGRTQSVSEGPTTQQ 1309

Query: 361  HPLL 372
             P+L
Sbjct: 1310 QPML 1313


>sp|O79555|NU4M_DINSE NADH-ubiquinone oxidoreductase chain 4
           OS=Dinodon semicarinatus GN=MT-ND4 PE=3 SV=1
          Length = 445

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 289 TLHVLPSFSKGQT--QAVTWTTHSQEHPLLLFQKILPSMLL 405
           +LH+L S   G      VT+ THS+EH LL+   ILP ML+
Sbjct: 398 SLHMLLSTQTGTPTLNMVTYPTHSREH-LLMVLHILPLMLI 437


>sp|Q66GP9|NOS1_ARATH Nitric oxide synthase 1 OS=Arabidopsis
           thaliana GN=NOS1 PE=1 SV=1
          Length = 561

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 511 KMDALREATMPSCLSSGLVAVLSRKECNLIVTHAVAEALREESSGKAEE 365
           K+D L + T  +C+   +V V  RK+ N++  H  +    +  SG A E
Sbjct: 224 KIDLLPKGTDMNCIGDWVVEVTMRKKLNVLSVHLTSSKSLDGVSGVASE 272


>sp|Q9L6N1|METE_SALTY
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Salmonella typhimurium GN=metE PE=3
           SV=3
          Length = 754

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 HVLPSFSKGQTQAVTWTTHSQE--HPLLLFQKILPSML 402
           +++P FSKGQ   +TWT   +E    L L  KI P +L
Sbjct: 125 YIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPVLL 162


>sp|Q8Z3B6|METE_SALTI
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Salmonella typhi GN=metE PE=3 SV=3
          Length = 754

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 HVLPSFSKGQTQAVTWTTHSQE--HPLLLFQKILPSML 402
           +++P FSKGQ   +TWT   +E    L L  KI P +L
Sbjct: 125 YIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPVLL 162


>sp|A9MY90|METE_SALPB
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Salmonella paratyphi B (strain ATCC
           BAA-1250 / SPB7) GN=metE PE=3 SV=1
          Length = 754

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 HVLPSFSKGQTQAVTWTTHSQE--HPLLLFQKILPSML 402
           +++P FSKGQ   +TWT   +E    L L  KI P +L
Sbjct: 125 YIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPVLL 162


>sp|Q5PKP9|METE_SALPA
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Salmonella paratyphi A GN=metE PE=3
           SV=1
          Length = 754

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 HVLPSFSKGQTQAVTWTTHSQE--HPLLLFQKILPSML 402
           +++P FSKGQ   +TWT   +E    L L  KI P +L
Sbjct: 125 YIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPVLL 162


>sp|Q57HP2|METE_SALCH
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Salmonella choleraesuis GN=metE
           PE=3 SV=1
          Length = 754

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 295 HVLPSFSKGQTQAVTWTTHSQE--HPLLLFQKILPSML 402
           +++P FSKGQ   +TWT   +E    L L  KI P +L
Sbjct: 125 YIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPVLL 162
tr_hit_id B0DQH2
Definition tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 76
Score (bit) 35.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913713|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_D11.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.1  
tr|A8NGA9|A8NGA9_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.1  
tr|A8NWG8|A8NWG8_COPC7 Putative uncharacterized protein OS=Copri...    34   3.7  
tr|B0W8J1|B0W8J1_CULQU Putative uncharacterized protein OS=Culex...    33   8.0  
tr|Q2U2D2|Q2U2D2_ASPOR Ras1 guanine nucleotide exchange factor O...    33   8.1  
tr|B8NJZ4|B8NJZ4_ASPFL Guanine nucleotide exchange factor, putat...    33   8.1  

>tr|B0DQH2|B0DQH2_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_295321 PE=4 SV=1
          Length = 512

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 27/76 (35%), Positives = 36/76 (47%)
 Frame = +3

Query: 237 HLPFFRK*RFLTSLFLRNSARFAFFFKRSDSSCNLDNSFTGAPSSAFPEDSSLNASATAW 416
           HLP     R + SL + +  R+   F R+DSS    NSF    SS+    S+  AS TA 
Sbjct: 34  HLP-----RQVVSLNITSGTRYTTNFYRADSSSAPSNSFLELSSSSLTPSSTSEASNTAS 88

Query: 417 VTIKLHSFRDSTATSP 464
            T +L +   ST   P
Sbjct: 89  STFQLLTDTVSTTQIP 104


>tr|A8NGA9|A8NGA9_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_05092 PE=4
           SV=1
          Length = 333

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 345 NSFTGAPSSAFPEDSSLNASATAWVTIKLHSFRDSTATSPDDKHEGIVASLKA 503
           + FTG+ S       S   SAT  V I L  +RD T T P D ++G+   +++
Sbjct: 248 SQFTGSASQHSYIPGSGTRSATGGVNIALRKYRDPTYTGPSDVYDGVKVQVRS 300


>tr|A8NWG8|A8NWG8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_00024 PE=4 SV=1
          Length = 1231

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 26/97 (26%), Positives = 44/97 (45%)
 Frame = +1

Query: 136 EYLTLFLSVMMLQSIEQPDE*SKHSLPLPSLKEATYPSSVSDVSLQASFFATLHVLPSFS 315
           +++  +L VM++     P + S  + PL      + P + +D ++Q S F       S  
Sbjct: 496 DFIPRYLGVMLVSYRRVPKQDSDPTSPLQLASRPSLPHATTDPTIQPSVFRR----QSSG 551

Query: 316 KGQTQAVTWTTHSQEHPLLLFQKILPSMLLQPHG*RS 426
           +  + AV   T   E  L   + I+P  LLQ HG R+
Sbjct: 552 QDDSSAVLDDTELPEVVLDRNRHIIPEWLLQGHGKRN 588


>tr|B0W8J1|B0W8J1_CULQU Putative uncharacterized protein OS=Culex
            quinquefasciatus GN=CpipJ_CPIJ003299 PE=4 SV=1
          Length = 1451

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +3

Query: 300  FAFFFKRSDSSCNLDNSFTGAPSSAFPEDSSLNASATAWVTIKLHSFRDSTATSPDDKHE 479
            +A +  R  SS N  N+ T A  ++     +L++SATA    K +  RDST T      E
Sbjct: 1351 YATYNPRRRSSFNTSNTATAANLASSSSSIALDSSATAPSVAKEYHRRDSTVTDASTSSE 1410

Query: 480  G 482
            G
Sbjct: 1411 G 1411


>tr|Q2U2D2|Q2U2D2_ASPOR Ras1 guanine nucleotide exchange factor
           OS=Aspergillus oryzae GN=AO090038000499 PE=4 SV=1
          Length = 299

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 29/102 (28%), Positives = 40/102 (39%)
 Frame = +1

Query: 97  LIYETG*RPAYNSEYLTLFLSVMMLQSIEQPDE*SKHSLPLPSLKEATYPSSVSDVSLQA 276
           ++YET  RP   S  LT          +EQ     +  L        TYP+ VS  +L  
Sbjct: 31  VVYETTDRPLLKSGSLTGL--------VEQLTRHDRLDLTFNETFLITYPTFVSAANLFD 82

Query: 277 SFFATLHVLPSFSKGQTQAVTWTTHSQEHPLLLFQKILPSML 402
           +     HV P     Q++   WT H Q+   L    IL + L
Sbjct: 83  ALLQRFHVDPPGQLTQSEMQLWTQHKQKAIRLRVVNILKTWL 124


>tr|B8NJZ4|B8NJZ4_ASPFL Guanine nucleotide exchange factor, putative
           OS=Aspergillus flavus NRRL3357 GN=AFLA_070430 PE=4 SV=1
          Length = 471

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 29/102 (28%), Positives = 40/102 (39%)
 Frame = +1

Query: 97  LIYETG*RPAYNSEYLTLFLSVMMLQSIEQPDE*SKHSLPLPSLKEATYPSSVSDVSLQA 276
           ++YET  RP   S  LT          +EQ     +  L        TYP+ VS  +L  
Sbjct: 31  VVYETTDRPLLKSGSLTGL--------VEQLTRHDRLDLTFNETFLITYPTFVSAANLFD 82

Query: 277 SFFATLHVLPSFSKGQTQAVTWTTHSQEHPLLLFQKILPSML 402
           +     HV P     Q++   WT H Q+   L    IL + L
Sbjct: 83  ALLQRFHVDPPGQLTQSEMQLWTQHKQKAIRLRVVNILKTWL 124