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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913724
Clone id YMU001_000033_E10
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAATTGCGGGACAATACCTTACTGCTCAAACAAGAGGACCATTCTTTTGCCACACGCT
TTGTACAAACAGACCATGTATGGTAACCTCTACCGTCGCCACATGCACCAGCTCAGCGAT
ATTCCACAATCGTGATCAAGAAAATATGGATTAAAAAATCCATCATGCAAATCAATCCTA
AGCAATTGTGGATACCGAGAACGGACAAAACAATACAAGTCCACCTACATTGCCTCCATC
GCAAATCCGACCTCGCCAAATTGCCTACGGATTTTGTCAGACAACCTAGGCCAATGGAAC
AACACCCTTGCAAACCACACAATGTCAAGTGGGTATGGAAACCAAAACAAACCCGCTCAC
CAGAGGCCTCTTCTTGGAAATACATACACAAGCAATTTCATTGGCAACCAAAACAAAGCC
CTCAAGAAAAACAACCAGTAGCATCACAAATTCTACAGATCATAGTCAAACACAGGACGT
GTCTTCTACAATCACTACTGTTCGGACCACGTAGCTTCAATGTGACCTCGCCACCA
■■Homology search results ■■ -
sp_hit_id A6NE52
Definition sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=Homo sapiens
Align length 73
Score (bit) 33.9
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913724|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_E10.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=H...    34   0.51 
sp|P50090|KEL2_YEAST Kelch repeat-containing protein 2 OS=Saccha...    33   0.87 
sp|P13545|HMB1_STRPU Homeobox protein HB1 OS=Strongylocentrotus ...    32   1.9  
sp|Q60519|SEM5B_MOUSE Semaphorin-5B OS=Mus musculus GN=Sema5b PE...    30   5.7  
sp|Q9P283|SEM5B_HUMAN Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE...    30   7.4  
sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophi...    30   7.4  
sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabi...    30   7.4  
sp|P18948|VIT6_CAEEL Vitellogenin-6 OS=Caenorhabditis elegans GN...    30   9.7  
sp|Q6C1W9|TRM10_YARLI tRNA (guanine-N(1)-)-methyltransferase OS=...    30   9.7  
sp|P27508|PQQF_KLEPN Coenzyme PQQ synthesis protein F OS=Klebsie...    30   9.7  
sp|P09814|POLG_TVMV Genome polyprotein OS=Tobacco vein mottling ...    30   9.7  
sp|P92524|M880_ARATH Uncharacterized mitochondrial protein AtMg0...    30   9.7  

>sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=Homo
            sapiens GN=KIAA1875 PE=2 SV=2
          Length = 1622

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +3

Query: 210  TIQVHLHCLHRKSDLAKLPTDFVRQPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIH 389
            T+Q H HCL        +P   V Q   +   P    +  W+W+P+    P  + W+   
Sbjct: 1030 TVQPHKHCLRPICFPGYVPNSAVLQQMWLNAEPGASQDALWLWRPR----PSQTQWQ--R 1083

Query: 390  KQFHWQPKQSPQE 428
            K   W  ++  +E
Sbjct: 1084 KLLQWMGEKPGEE 1096


>sp|P50090|KEL2_YEAST Kelch repeat-containing protein 2
           OS=Saccharomyces cerevisiae GN=KEL2 PE=1 SV=1
          Length = 882

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 285 PRPMEQHPCKPHNVK-WVWKPKQTRSPEASSWKYIHKQFHWQPKQSPQEKQPVASQILQI 461
           P P+  H    ++ K WV+  +  ++    +++Y   Q  W   ++  EK P   +   +
Sbjct: 254 PPPLTNHTMVAYDNKLWVFGGETPKTISNDTYRYDPAQSEWSKVKTTGEKPPPIQEHASV 313

Query: 462 IVKHRTCLL 488
           + KH  C+L
Sbjct: 314 VYKHLMCVL 322


>sp|P13545|HMB1_STRPU Homeobox protein HB1 OS=Strongylocentrotus
           purpuratus PE=2 SV=2
          Length = 308

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 160 PSCKSILSNCGYRE--RTKQYKSTYIASIANPTSPNCLRILSDNLGQWNNTLANHTMSSG 333
           PS    LS+C + +  +T  Y S+   S+   + P C + L         TL+N + ++G
Sbjct: 27  PSGSYELSSCAFSKNPKTSSYSSSSSPSLVATSKPPCTQQLGAATFYGGGTLSNFSTTAG 86

Query: 334 YGNQN 348
           YG+ +
Sbjct: 87  YGDHS 91


>sp|Q60519|SEM5B_MOUSE Semaphorin-5B OS=Mus musculus GN=Sema5b PE=2
            SV=1
          Length = 1093

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
 Frame = -2

Query: 505  PNSSDCRRHVLCLTMICRICDATGCFS*GLCFGCQ*NCLCMYFQEEAS--------GERV 350
            P   D   +  C    C +  A  C++      C  +C   ++Q   S        GE +
Sbjct: 833  PCVGDAAEYQDCNPQACPVRGAWSCWT--AWSQCSASCGGGHYQRTRSCTSPAPSPGEDI 890

Query: 349  CFGFHTHLTLCGLQGC 302
            C G HT   LC  Q C
Sbjct: 891  CLGLHTEEALCSTQAC 906


>sp|Q9P283|SEM5B_HUMAN Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2
            SV=4
          Length = 1151

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
 Frame = -2

Query: 505  PNSSDCRRHVLCLTMICRICDATGCFS*GLCFGCQ*NCLCMYFQEEAS--------GERV 350
            P   D   +  C    C +  A  C++      C  +C   ++Q   S        GE +
Sbjct: 891  PCVGDAAEYQDCNPQACPVRGAWSCWT--SWSPCSASCGGGHYQRTRSCTSPAPSPGEDI 948

Query: 349  CFGFHTHLTLCGLQGC 302
            C G HT   LC  Q C
Sbjct: 949  CLGLHTEEALCATQAC 964


>sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophila
           melanogaster GN=ems PE=2 SV=2
          Length = 497

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 2/140 (1%)
 Frame = +3

Query: 66  QTDHVW*PLPSPH-APAQRYSTXXXXXXXXXXXXXXXNPKQLWIPRTDKTIQVHLHCLHR 242
           Q  H+  P P PH +PAQ++                   +    P++ + IQ  L  LH 
Sbjct: 102 QQQHLQAPHPHPHLSPAQQH---------VLHQHLLMQHQHPGTPKSHQDIQELLQRLHH 152

Query: 243 KSDLAKLPTDFVRQPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIHKQFHWQPKQ-S 419
            + +A   +    +  P  + P    ++K    P      +A +     +  H  PK  S
Sbjct: 153 NAAMASGLSPLQTRLSPETEQPQMAVSLKRERSPAPPAMEQAENPAQRIQPPHTPPKSVS 212

Query: 420 PQEKQPVASQILQIIVKHRT 479
           PQ  QP +S  L I   H T
Sbjct: 213 PQSSQPSSSPTLLISSPHAT 232


>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein
           OS=Arabidopsis thaliana GN=ARP PE=2 SV=2
          Length = 536

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 205 TKQYKSTYIASIANPTSPNCLRILSDNLGQWNNTLANH 318
           T ++ S Y+ +   P S + L+ LS  + +W+ TL+NH
Sbjct: 377 TAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNH 414


>sp|P18948|VIT6_CAEEL Vitellogenin-6 OS=Caenorhabditis elegans
            GN=vit-6 PE=1 SV=5
          Length = 1651

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 393  QFHWQPKQSPQEKQPVASQILQIIVKHRTCLLQS 494
            Q H+QP+ S  E++PV  +I     K   C+++S
Sbjct: 1313 QIHYQPRNSRYEQKPVMEKIAHHASKQANCVVKS 1346


>sp|Q6C1W9|TRM10_YARLI tRNA (guanine-N(1)-)-methyltransferase
           OS=Yarrowia lipolytica GN=TRM10 PE=3 SV=1
          Length = 371

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
 Frame = +3

Query: 288 RPMEQHPCKPHNVKWVWKPKQTRSPEASS---WKYIHKQFHWQPKQS-----PQEKQPVA 443
           R  E HP  P NV   +  K    PE  S   WK   K+  W+ K+       +EK+  A
Sbjct: 29  RTSEPHPKNPQNVPAPYNTKTAVIPEGMSKNEWKKAQKKAIWESKKDEIAAVKKEKKKAA 88

Query: 444 SQILQIIV 467
            +  Q+ +
Sbjct: 89  RKRKQLAI 96


>sp|P27508|PQQF_KLEPN Coenzyme PQQ synthesis protein F OS=Klebsiella
           pneumoniae GN=pqqF PE=3 SV=1
          Length = 761

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +3

Query: 240 RKSDLAKLPTDFVRQPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIHKQFHWQPKQS 419
           R  +L +   DF+RQ  PM++   +P   +   + + +R PEA +   + +Q +  P+ +
Sbjct: 669 RAGELLRCGKDFLRQLAPMDEATFRPLQQRLAAQIRASRPPEARALSAL-RQEYGLPELT 727

Query: 420 PQ 425
           PQ
Sbjct: 728 PQ 729
tr_hit_id A7TJ78
Definition tr|A7TJ78|A7TJ78_VANPO Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294)
Align length 69
Score (bit) 37.4
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913724|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_E10.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7TJ78|A7TJ78_VANPO Putative uncharacterized protein OS=Vande...    37   0.50 
tr|Q6MKE3|Q6MKE3_BDEBA Putative uncharacterized protein OS=Bdell...    36   1.4  
tr|A7ZFI8|A7ZFI8_CAMC1 Formate dehydrogenase, cytochrome B subun...    36   1.4  
tr|B7VP70|B7VP70_VIBSP Putative transcriptional regulator, LysR ...    36   1.4  
tr|A3Y1G5|A3Y1G5_9VIBR Transcriptional regulator, LysR family pr...    36   1.4  
tr|Q54NK4|Q54NK4_DICDI Putative uncharacterized protein OS=Dicty...    36   1.4  
tr|A8X8R2|A8X8R2_CAEBR CBR-CRM-1 protein OS=Caenorhabditis brigg...    35   1.9  
tr|O96859|O96859_HELER Hox-type homeodomain protein (Fragment) O...    35   2.5  
tr|A0DDS8|A0DDS8_PARTE Chromosome undetermined scaffold_47, whol...    35   2.5  
tr|A7V6C3|A7V6C3_BACUN Putative uncharacterized protein OS=Bacte...    34   4.2  
tr|A8HPW4|A8HPW4_CHLRE Predicted protein (Fragment) OS=Chlamydom...    34   5.5  
tr|Q9NTA2|Q9NTA2_HUMAN Putative uncharacterized protein DKFZp434...    34   5.5  
tr|A2U8G4|A2U8G4_BACCO Putative uncharacterized protein OS=Bacil...    33   7.2  
tr|B4IAR9|B4IAR9_DROSE GM22129 OS=Drosophila sechellia GN=GM2212...    33   7.2  
tr|A6CVJ7|A6CVJ7_9VIBR Probable LysR-family transcription regula...    33   9.3  
tr|Q17C39|Q17C39_AEDAE Cyclin-dependent kinase 5 activator OS=Ae...    33   9.3  
tr|B5VJH8|B5VJH8_YEAS6 YGR238Cp-like protein (Fragment) OS=Sacch...    33   9.3  
tr|B3LI02|B3LI02_YEAS1 Kelch repeat-containing protein 2 OS=Sacc...    33   9.3  
tr|A6ZUP6|A6ZUP6_YEAS7 Conserved protein OS=Saccharomyces cerevi...    33   9.3  

>tr|A7TJ78|A7TJ78_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1004p21 PE=4 SV=1
          Length = 755

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 26/69 (37%), Positives = 33/69 (47%)
 Frame = +1

Query: 118 DIPQS*SRKYGLKNPSCKSILSNCGYRERTKQYKSTYIASIANPTSPNCLRILSDNLGQW 297
           DIPQ  S K  L+NP    IL N  Y ER  + +S +     N   PN L +  +N G  
Sbjct: 222 DIPQDNSNKKDLRNP----ILINLEYNERNNKNESNF----QNEIQPNNLNVNYNNNGNS 273

Query: 298 NNTLANHTM 324
           NN  A+  M
Sbjct: 274 NNYSADEDM 282


>tr|Q6MKE3|Q6MKE3_BDEBA Putative uncharacterized protein
           OS=Bdellovibrio bacteriovorus GN=Bd2455 PE=4 SV=1
          Length = 214

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 396 FHWQPKQSPQEKQPVASQILQIIVKHRTCLLQSLLFGPR 512
           F W  KQSP+E++ V S  L+++ K +TC L  L F  R
Sbjct: 114 FEWNAKQSPEEQRFVYSHFLELVPKDQTCELVRLDFSWR 152


>tr|A7ZFI8|A7ZFI8_CAMC1 Formate dehydrogenase, cytochrome B subunit
           OS=Campylobacter concisus (strain 13826) GN=Ccon26_17090
           PE=4 SV=1
          Length = 315

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -2

Query: 193 IHNCLGLICMMDFLIHIFLITI 128
           IHNCLG++C + FL+HI++  I
Sbjct: 245 IHNCLGIVCAVFFLVHIYMAAI 266


>tr|B7VP70|B7VP70_VIBSP Putative transcriptional regulator, LysR
           family OS=Vibrio splendidus LGP32 GN=VS_1634 PE=4 SV=1
          Length = 311

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 210 TIQVHLHCLHRKSDLAKLPTDFVRQPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIH 389
           +I + L   +   D+A+        P P  Q   K  N+     PK  RSP    + Y H
Sbjct: 231 SIPIQLSNFNVAPDMAEATDIIFHLPTPFAQQAAKQRNLVCKRVPKAIRSPSEDVYLYWH 290

Query: 390 KQFHWQP 410
           K+FH  P
Sbjct: 291 KRFHNDP 297


>tr|A3Y1G5|A3Y1G5_9VIBR Transcriptional regulator, LysR family
           protein OS=Vibrio sp. MED222 GN=MED222_15327 PE=4 SV=1
          Length = 306

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 210 TIQVHLHCLHRKSDLAKLPTDFVRQPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIH 389
           +I + L   +   D+A+        P P  Q   K  N+     PK  RSP    + Y H
Sbjct: 226 SIPIQLSNFNVAPDMAEATDIIFHLPTPFAQQAAKQRNLVCKRVPKAIRSPSEDVYLYWH 285

Query: 390 KQFHWQP 410
           K+FH  P
Sbjct: 286 KRFHNDP 292


>tr|Q54NK4|Q54NK4_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0186385 PE=4 SV=1
          Length = 1177

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 282 QPRPMEQHPCKPHNVKWVWKPKQTRSPEASSWKYIHKQFHWQPKQSPQEKQPVASQ 449
           QP+P  Q P +P   +   +P+Q++ P+ S       Q   QP+QS Q +QP   Q
Sbjct: 626 QPQPQPQQPQQPQQSQQPQQPQQSQQPQQSQQSQ-QSQQPQQPQQSQQSQQPQPQQ 680


>tr|A8X8R2|A8X8R2_CAEBR CBR-CRM-1 protein OS=Caenorhabditis briggsae
           GN=Cbr-crm-1 PE=4 SV=2
          Length = 884

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 304 CCSIGLGCLTKSVGNLARSDLRWRQCRWTCIVLSVLGIHNCLGLICMMD 158
           CC + LGC T++   L R D  W++   T    S LG H C   +C  D
Sbjct: 223 CCPVCLGCQTENQTKLERGD-TWQKDDCTSCTCSELGAHMCEKYMCKTD 270


>tr|O96859|O96859_HELER Hox-type homeodomain protein (Fragment)
           OS=Heliocidaris erythrogramma GN=HeHbox1 PE=4 SV=1
          Length = 181

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 178 LSNCGYRE--RTKQYKSTYIASIANPTSPNCLRILSDNLGQWNNTLANHTMSSGYGNQN 348
           LS+C + +  +T  Y S+   S+A  T P+C + L         TL+N + ++GYG+ +
Sbjct: 33  LSSCAFTKNPKTSSYSSSSSPSLAATTKPSCTQQLGAATFYGGGTLSNFSTTAGYGDHS 91


>tr|A0DDS8|A0DDS8_PARTE Chromosome undetermined scaffold_47, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00016036001 PE=4 SV=1
          Length = 2697

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
 Frame = -2

Query: 457  CRICDATGCFS*GLCFGCQ---*NCLC---------MYFQEEASGERVCFGFHTHLTLCG 314
            C+ CDATGC S   C G +    +C+C         MY  + A     C G     T C 
Sbjct: 1172 CKTCDATGCTS---CLGDRITVPSCVCPDGYFDSYQMYCTQCAKKCITCNGSAELCTACS 1228

Query: 313  LQGCCSIGLGCLTKSVGNLARSDLRWRQCRWTCIVLSVLGIHNCLG 176
                 S   GC     G    SDL  +QC  TC   +  G  +C G
Sbjct: 1229 GIRVSSPICGCPN---GYFENSDLDCQQCDSTCKDCNQYGCLSCFG 1271


>tr|A7V6C3|A7V6C3_BACUN Putative uncharacterized protein
            OS=Bacteroides uniformis ATCC 8492 GN=BACUNI_03136 PE=3
            SV=1
          Length = 1079

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 24/86 (27%), Positives = 37/86 (43%)
 Frame = +1

Query: 148  GLKNPSCKSILSNCGYRERTKQYKSTYIASIANPTSPNCLRILSDNLGQWNNTLANHTMS 327
            G KNPS    +SN      T  YK+ Y++ + N T      +   N+G W+  L N+  +
Sbjct: 926  GSKNPSFLMSMSN------TLTYKNFYLSFLLNGTFKVTRELNEANIGSWSYNLYNYLHN 979

Query: 328  SGYGNQNKPAHQRPLLGNTYTSNFIG 405
            + Y     P H      +   +NF G
Sbjct: 980  ADYWT---PEHTNSKYASPAYNNFDG 1002