NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913728
Clone id YMU001_000033_F02
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACACACACAACTGCCCCTATATAGCTCAGGGTATTCACAGCACCCCTGTCCTCTCGAAA
ACACCTTCAAAAAAGACTATTCACACTAGGAGGGCCTCGCCTGCACTTCGCCCAACGCAC
ACACAACCTGCACAATTGCTAGAGAGCGATTACACCAATCTTGCCCGCTTCCAGCTCTTC
CACATCTCGACACCTCTCTCTCTTTCTCTCTCACACACACAGGGGCCCCGGGGGACGCAC
ACGCTCACACACACCGGCACCACACACCTTGGAGACGAGCAAAGAAGAAAGGGAGAAAGG
GAGGAAAGACGACGCCAAAATCGACAATGACAGCTTCTCTTTCAAACCAGAAACCATGTA
CAAACTCCATGAACCGTGCTCAAGGCTACGCCATGGCCATCGCCGCTTCATACAGAGGGG
CACACACCTCCCTCGACAAACCGAATCCGTCGACACACGCCTCGACGGGAAGATTCACCT
CTAGCTTCGCATCGACGACAACTTTGGCTCTTGATAGCTTTCTCTAGCTTCTTCTCCTGC
AGAGCTCGTGCCCTTCCAAGCTTTTTTACGGACCATGCATCGCGATGCCGAGCGCA
■■Homology search results ■■ -
sp_hit_id P21614
Definition sp|P21614|VTDB_MOUSE Vitamin D-binding protein OS=Mus musculus
Align length 44
Score (bit) 33.5
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913728|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F02.
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21614|VTDB_MOUSE Vitamin D-binding protein OS=Mus musculus G...    33   0.83 
sp|Q74Z37|SEF1_ASHGO Putative transcription factor SEF1 OS=Ashby...    33   1.1  
sp|P53789|VTDB_RABIT Vitamin D-binding protein OS=Oryctolagus cu...    32   3.2  
sp|Q8TGJ7|YL66B_YEAST Uncharacterized protein YLL066W-B OS=Sacch...    31   4.1  
sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicu...    31   5.4  
sp|O14960|LECT2_HUMAN Leukocyte cell-derived chemotaxin-2 OS=Hom...    30   7.1  
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryot...    30   9.2  
sp|Q9P7I3|MDV1_SCHPO Mitochondrial division protein 1 OS=Schizos...    30   9.2  
sp|A2QVS9|MCES_ASPNC mRNA cap guanine-N7 methyltransferase OS=As...    30   9.2  

>sp|P21614|VTDB_MOUSE Vitamin D-binding protein OS=Mus musculus
           GN=Gc PE=1 SV=2
          Length = 476

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +3

Query: 21  YSSGYSQHPCPLENTFKKDYSH*EGLACTSPNAHTTCTIARERL 152
           YSS Y Q P PL   + K+Y    G  CTS N  T C + +ERL
Sbjct: 163 YSSNYGQAPLPLLVAYTKNYLSMVGSCCTSANP-TVCFV-KERL 204


>sp|Q74Z37|SEF1_ASHGO Putative transcription factor SEF1 OS=Ashbya
           gossypii GN=SEF1 PE=3 SV=1
          Length = 1051

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 4   THNCPYIAQGIHSTPVLSKTPSKKTIHTRRASPALRPTHTQPAQLLESDYTNLARFQLFH 183
           +HN P      H+TP+LS    K  + T  A P           LL S Y N+  F L  
Sbjct: 265 SHNTPIDTPSSHTTPMLSPEVKKPVVATTNAMP-----------LLPSPYANIDEFVLGD 313

Query: 184 ISTPL 198
           +  P+
Sbjct: 314 VHIPI 318


>sp|P53789|VTDB_RABIT Vitamin D-binding protein OS=Oryctolagus
           cuniculus GN=GC PE=2 SV=1
          Length = 476

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 21  YSSGYSQHPCPLENTFKKDYSH*EGLACTSPNAHTTCTIARERL 152
           YSS Y Q P P+  ++ K Y    G  CTS  A  T    +ERL
Sbjct: 163 YSSNYGQAPLPILVSYTKSYLSMVGTCCTS--ASPTVCFLKERL 204


>sp|Q8TGJ7|YL66B_YEAST Uncharacterized protein YLL066W-B
           OS=Saccharomyces cerevisiae GN=YLL066W-B PE=4 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 216 HTGAPGDAHAHTHRHHTP 269
           HT  P   H HTH HHTP
Sbjct: 21  HTHTPHPHHTHTHTHHTP 38


>sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicus
           GN=Gc PE=1 SV=3
          Length = 476

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = +3

Query: 21  YSSGYSQHPCPLENTFKKDYSH*EGLACTSPNAHTTCTIARERL 152
           YSS Y Q P PL   + K Y    G  CTS  A  T    +ERL
Sbjct: 163 YSSNYGQAPLPLLVGYTKSYLSMVGSCCTS--AKPTVCFLKERL 204


>sp|O14960|LECT2_HUMAN Leukocyte cell-derived chemotaxin-2 OS=Homo
           sapiens GN=LECT2 PE=2 SV=1
          Length = 151

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = -2

Query: 244 ACASPGAPVCVREKEREVSRCGRAGSGQDWCNRSLAI---VQVVCALGEVQARP 92
           A A P A +C  +   E+  C R G GQ    RS      V V+C+ G     P
Sbjct: 16  ALAGPWANICAGKSSNEIRTCDRHGCGQYSAQRSQRPHQGVDVLCSAGSTVYAP 69


>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3
           OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3
           SV=1
          Length = 486

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 236 RTRSHTPAPHTLETSKEEREKGRKDDAKIDNDSFSFKP-ETMYKLHEPCSRLRHGHRRFI 412
           +  SHTP+P  +E +++ R     ++A+ D+   SFK    +  L E C  L  G++   
Sbjct: 27  KKESHTPSPEPIEDTEDNRVIEETEEAEEDDAPKSFKDLGIVDSLCEACDTL--GYK--- 81

Query: 413 QRGTHLPRQTESVDTRLDGK 472
                 P Q ES+   L G+
Sbjct: 82  ---APTPIQRESIPLALQGR 98


>sp|Q9P7I3|MDV1_SCHPO Mitochondrial division protein 1
           OS=Schizosaccharomyces pombe GN=mdv1 PE=2 SV=1
          Length = 651

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 251 TPAPHTLETSKEEREKGRKDDAKIDNDSFSFKPETMY--KLHEPCSRLR 391
           +P P T    KE ++     D  + +DS  FKP+++   KL + C++LR
Sbjct: 131 SPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQLR 179


>sp|A2QVS9|MCES_ASPNC mRNA cap guanine-N7 methyltransferase
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=abd1 PE=3 SV=1
          Length = 609

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
 Frame = +2

Query: 44  PLSSRKHLQKRLFTLG----GPRLHFAQRTHNLHNC*RAITPILPAXXXXXXXXXXXXXX 211
           P+S RK L++R   L      P   +++R  +      A  P  P+              
Sbjct: 152 PISKRKRLEERHQKLRKRGQAPPSAYSRRDGDETAARAAPRPRSPSPPLPPRSPSPEVQA 211

Query: 212 XXXXGPGGRTRSHTPAPHTLETSKEEREKGRKDDAKIDNDS 334
                PGG  R     P TL   +EERE+  ++DA  ++ S
Sbjct: 212 RQRKRPGGGARRGLVDPQTLRRRQEERERALEEDAMRNSQS 252
tr_hit_id B1VSX3
Definition tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
Align length 38
Score (bit) 28.5
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913728|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F02.
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein OS=Strep...    28   0.49 
tr|B5WHW3|B5WHW3_9BURK Metallophosphoesterase OS=Burkholderia sp...    36   1.5  
tr|Q4S509|Q4S509_TETNG Chromosome 6 SCAF14737, whole genome shot...    35   2.5  
tr|A7QHU4|A7QHU4_VITVI Uricase OS=Vitis vinifera GN=GSVIVT000137...    35   3.3  
tr|B0CVF4|B0CVF4_LACBS Predicted protein OS=Laccaria bicolor (st...    35   3.3  
tr|A2CEB9|A2CEB9_DANRE Novel protein (Fragment) OS=Danio rerio G...    35   4.3  
tr|Q3T9P7|Q3T9P7_MOUSE Putative uncharacterized protein OS=Mus m...    35   4.3  
tr|Q4YFP1|Q4YFP1_PLABE Putative uncharacterized protein (Fragmen...    35   4.3  
tr|A8XF46|A8XF46_CAEBR Putative uncharacterized protein OS=Caeno...    34   7.3  
tr|A8QHG3|A8QHG3_BRUMA Putative uncharacterized protein OS=Brugi...    34   7.3  
tr|B4L7N8|B4L7N8_DROMO GI10907 OS=Drosophila mojavensis GN=GI109...    26   9.3  
tr|A6S6W3|A6S6W3_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   9.5  
tr|A6S093|A6S093_BOTFB Putative uncharacterized protein OS=Botry...    33   9.5  

>tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein
           OS=Streptomyces griseus subsp. griseus (strain JCM 4626
           / NBRC 13350) GN=SGR_848 PE=4 SV=1
          Length = 348

 Score = 28.5 bits (62), Expect(2) = 0.49
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 388 TPWPSPLHTEGHTPPS-TNRIRRHTPRREDSPLASHRR 498
           T  P   HT  HT P+  N  R H    +  P ++HRR
Sbjct: 295 THGPGDAHTHAHTHPACENPARGHPQPHDHGPASAHRR 332



 Score = 27.7 bits (60), Expect(2) = 0.49
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 216 HTGAPGDAHAHTHRH-HTP 269
           HT  PGDAH  TH H H P
Sbjct: 256 HTHGPGDAHTLTHAHTHGP 274


>tr|B5WHW3|B5WHW3_9BURK Metallophosphoesterase OS=Burkholderia sp.
           H160 GN=BH160DRAFT_2664 PE=4 SV=1
          Length = 313

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 153 HQSCPLPALPHLDTSLSFSLTHTGAPGDAHAHTHRHHTPW 272
           H   PLPA P LD        H   P D+HA  HR+ T W
Sbjct: 31  HHGLPLPATPSLDA-------HADHPDDSHADPHRYRTIW 63


>tr|Q4S509|Q4S509_TETNG Chromosome 6 SCAF14737, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00023941001
           PE=4 SV=1
          Length = 168

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 25/64 (39%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
 Frame = +3

Query: 93  GLAC--TSPNAHTTCTIARERLHQSC------PLPALPHLDTSLSFSLTHTGAPGDAHAH 248
           GL C  T PN    C  A    H S       P P  P    SLS S THT      H H
Sbjct: 98  GLGCNLTCPNYARVCRYAYRSRHTSTRRCTDSPPPRSPSHSLSLSLSYTHT----HTHTH 153

Query: 249 THRH 260
           TH H
Sbjct: 154 THTH 157


>tr|A7QHU4|A7QHU4_VITVI Uricase OS=Vitis vinifera
           GN=GSVIVT00013798001 PE=3 SV=1
          Length = 295

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = +3

Query: 108 SPNAHTTC-----TIARERLHQSCPLPALPHLDT---SLSFSLTHTGAPGDAHAHTHRH 260
           SP+  +T      T+    L  S PLP  P L     SLS SLTHT      H HTH H
Sbjct: 234 SPSVQSTLYQMAKTVLNRSLSLSLPLPPSPSLSPFSLSLSLSLTHT----HTHTHTHMH 288


>tr|B0CVF4|B0CVF4_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322879 PE=4 SV=1
          Length = 656

 Score = 35.0 bits (79), Expect = 3.3
 Identities = 25/93 (26%), Positives = 32/93 (34%)
 Frame = +3

Query: 105 TSPNAHTTCTIARERLHQSCPLPALPHLDTSLSFSLTHTGAPGDAHAHTHRHHTPWXXXX 284
           T+P  H T    R R H +  L A   L        T +    D HAH  RH +P     
Sbjct: 13  TTPQRHVTSLSKRARQHVATSLSATCLLTPGTRRGTTTSTHDHDHHAHRRRHASPRQRRA 72

Query: 285 XXXXXXXXTTPKSTMTASLSNQKPCTNSMNRAQ 383
                   TTP     A+ ++     N   R Q
Sbjct: 73  TPTNDTPTTTPPPRQRATTASTDAHVNGRRRRQ 105


>tr|A2CEB9|A2CEB9_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=CH211-169K21.2-001 PE=4 SV=1
          Length = 518

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 1   HTHNCPYIAQGIHSTPVLSKTPSKKTIHTRRASPALRPTHTQPAQLLES 147
           H+H C   A  +HS+PV S  PS    H   ++PA + THT     L+S
Sbjct: 118 HSHGCSSPALSLHSSPVSSPCPSPIQQHYTSSTPA-QKTHTDLQSRLQS 165


>tr|Q3T9P7|Q3T9P7_MOUSE Putative uncharacterized protein OS=Mus
           musculus PE=4 SV=1
          Length = 101

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 PNAHTTCTIAR-ERLHQSCPLPALPHLDTSLSFSLTHTGAPGDAHAHTHRH 260
           PN ++T  + + E +H S  L     L  SLS SL+HT      H HTH H
Sbjct: 51  PNMYSTLGLTQSEHMHTSLSLSL--SLSLSLSLSLSHTHTHTHTHTHTHTH 99


>tr|Q4YFP1|Q4YFP1_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB404290.00.0 PE=4 SV=1
          Length = 149

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +3

Query: 3   HTQLPLYSSGYSQ-HPCPLENTFKKDYSH*EGLACTSPNAHT-TCTIARERLHQSCPLPA 176
           HT   +YS  ++  H     +T  + +SH      T  + HT T T      H    +  
Sbjct: 31  HTHSHIYSHTHTHTHSHTHTHTHTQTHSHIYSHTHTHIHTHTHTLTYTHSHTHSHTHIHT 90

Query: 177 LPH-LDTSLSFSLTHTGAPGDAHAHTHRH-HT 266
           L + L  +L+++LTH       H HTH H HT
Sbjct: 91  LTYTLTHTLTYTLTHIFTHTHTHTHTHTHTHT 122


>tr|A8XF46|A8XF46_CAEBR Putative uncharacterized protein
            OS=Caenorhabditis briggsae GN=CBG12265 PE=4 SV=2
          Length = 1901

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 135  IARERLHQSCPLPALPHLDTSLSFSLTHTGAPGDAHAHTHRHHTP 269
            I RE +H   P PA     T +S + T T  P   H H H HH P
Sbjct: 1065 IVRETVH---PTPARAASPTQISVTFTATAHPIHHHHHHHHHHPP 1106


>tr|A8QHG3|A8QHG3_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_56950 PE=4 SV=1
          Length = 214

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 242 RSHTPAPHTLETSKEEREKGRKDDAKIDNDSFSFKPETMYKLHEPCSRLRHGHR 403
           RSHTP  H    +   R   R +    D+D ++  P T  K  E CS    G R
Sbjct: 93  RSHTPTYHERSPTPISRNNKRPNSDLSDDDDYAIGPTTRRKWQEYCSTKTKGQR 146