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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913737
Clone id YMU001_000033_F11
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCAATCGACCATGCTTGTTTCAGCTTTTGATGTGCAGAAGAAACGGCCAAAGTGCCTGCA
AATGTTGGCACTTTTGTATCACGTCATTTAAATCTACATCAGTAGAGCCTTAAAAAGCCC
TATTTCAATTTTGCCCTTGCAATCTGCTGAGATCTAATTAACACAATCGCCATACAGGCC
TGTTTGCTAGGCAATACAAATGAAGGGGGTAACGAATGCCCTTCCCCCACAACATTACTT
TACAAAAGTTATGTTCAGACAGGTGTTGCACCTCCCTAGTAAGGATTATATCGGCGGGAA
TTACCAGCTTGTTTTTGACAATGCGGTCCACGACCACCGGCTCTACCTTCTCTATCATAT
GCACTGACTGATGGCGCTACTGCAGTGCCTGATTGTTGCAGAACATAGCCAATACGCCCA
TCTGGTAGCATCATTGGCACCATGGCCATTCCAGCAGGTGTGGGCCCTCGGCCATAGATA
ACAGGCT
■■Homology search results ■■ -
sp_hit_id Q6T3U3
Definition sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus
Align length 63
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913737|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F11.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus nor...    31   3.4  
sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musc...    30   4.4  
sp|Q976K1|LYSK_SULTO Acetyl-lysine deacetylase OS=Sulfolobus tok...    29   9.8  

>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus
           norvegicus GN=Npc1l1 PE=1 SV=1
          Length = 1331

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
 Frame = +3

Query: 231 NITLQKLC-----------SDRCCTSLVRIISAGITSLFLTMRSTTTGSTFSIICTD*WR 377
           NI+LQ +C           SD C  SL++      T L LT   T  G T  +   D + 
Sbjct: 464 NISLQDICYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFL 523

Query: 378 YCS 386
           YC+
Sbjct: 524 YCA 526


>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus
           musculus GN=Npc1l1 PE=2 SV=1
          Length = 1333

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 225 PHNITLQKLCSDRCCTSLVRIISAGITSLFLTMRSTTTGSTFSIICTD*WRYCS 386
           PHN +L    +D C  SL++      T L LT   T  G T  +   D + YC+
Sbjct: 477 PHNTSL----TDCCVNSLLQYFQNNHTLLLLTANQTLNGQTSLVDWKDHFLYCA 526


>sp|Q976K1|LYSK_SULTO Acetyl-lysine deacetylase OS=Sulfolobus
           tokodaii GN=lysK PE=3 SV=1
          Length = 346

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -3

Query: 482 VIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAVAPSVSAYDREGRAGGRGPHCQKQAG 303
           VIYGRG   A   ++ M+L      Y+L + G  V  +  A D EG++ G     ++ A 
Sbjct: 83  VIYGRGAVDAKGPLIAMLLAT----YILNEKGYKVQFAALA-DEEGKSKG----ARELAN 133

Query: 302 NSRRYN 285
           +  RYN
Sbjct: 134 SGIRYN 139
tr_hit_id Q2HTD6
Definition tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand OS=Medicago truncatula
Align length 71
Score (bit) 79.3
E-value 8.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913737|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F11.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1 (RNA recognition...    79   8e-14
tr|A7QFA8|A7QFA8_VITVI Chromosome undetermined scaffold_87, whol...    78   2e-13
tr|B4F9N8|B4F9N8_MAIZE Putative uncharacterized protein OS=Zea m...    77   4e-13
tr|A9NVU4|A9NVU4_PICSI Putative uncharacterized protein OS=Picea...    77   4e-13
tr|A7PXS3|A7PXS3_VITVI Chromosome chr15 scaffold_37, whole genom...    75   2e-12
tr|Q53JL6|Q53JL6_ORYSJ RNA recognition motif family protein, exp...    73   6e-12
tr|Q0ITI7|Q0ITI7_ORYSJ Os11g0250000 protein OS=Oryza sativa subs...    73   6e-12
tr|A2ZD39|A2ZD39_ORYSI Putative uncharacterized protein OS=Oryza...    73   6e-12
tr|Q8W2R4|Q8W2R4_ORYSA Putative RNA-binding protein OS=Oryza sat...    72   1e-11
tr|Q7XGR3|Q7XGR3_ORYSJ Os10g0151800 protein OS=Oryza sativa subs...    72   1e-11
tr|B8BFR8|B8BFR8_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|A9T0W7|A9T0W7_PHYPA Predicted protein OS=Physcomitrella paten...    71   2e-11
tr|Q9ASP6|Q9ASP6_ARATH AT4g00830/A_TM018A10_14 (Putative unchara...    68   2e-10
tr|O23093|O23093_ARATH A_TM018A10.14 protein (Putative uncharact...    68   2e-10
tr|A7PPC6|A7PPC6_VITVI Chromosome chr8 scaffold_23, whole genome...    67   6e-10
tr|Q3E8X6|Q3E8X6_ARATH Uncharacterized protein At5g28390.1 OS=Ar...    59   1e-07
tr|Q9LXJ8|Q9LXJ8_ARATH Putative RNA binding protein (At3g52660) ...    57   3e-07
tr|A3C2L7|A3C2L7_ORYSJ Putative uncharacterized protein OS=Oryza...    57   3e-07
tr|Q9LKV2|Q9LKV2_ARATH F21B23.7 protein OS=Arabidopsis thaliana ...    55   1e-06
tr|Q2RAS7|Q2RAS7_ORYSJ RNA recognition motif family protein, exp...    45   0.001
tr|Q0IUR5|Q0IUR5_ORYSJ Os11g0139500 protein (Fragment) OS=Oryza ...    45   0.001
tr|B7F699|B7F699_ORYSJ cDNA clone:J023003B09, full insert sequen...    45   0.001
tr|A3C8G5|A3C8G5_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.001
tr|Q84VA8|Q84VA8_ORYSJ Putative RNA-binding protein (Fragment) O...    45   0.002
tr|Q2QY16|Q2QY16_ORYSJ RNA recognition motif family protein, exp...    45   0.002
tr|Q2HS59|Q2HS59_MEDTR RNA-binding region RNP-1 (RNA recognition...    45   0.002
tr|Q0IQ94|Q0IQ94_ORYSJ Os12g0136200 protein (Fragment) OS=Oryza ...    45   0.002
tr|A3CER4|A3CER4_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2ZHW4|A2ZHW4_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A2ZB89|A2ZB89_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005

>tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1 (RNA recognition
           motif); Calcium-binding EF-hand OS=Medicago truncatula
           GN=MtrDRAFT_AC150443g37v2 PE=4 SV=2
          Length = 559

 Score = 79.3 bits (194), Expect = 8e-14
 Identities = 43/71 (60%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAV-APSVSAYDREGRAGGRGPHCQKQ 309
           P+IYGRGP PAGM MVPM+LPDGRIGYVLQQ G  V  P     DR    GGRG      
Sbjct: 489 PMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGGGND 548

Query: 308 AGN-SRRYNPY 279
            GN +RRY PY
Sbjct: 549 DGNRNRRYRPY 559


>tr|A7QFA8|A7QFA8_VITVI Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037346001 PE=4 SV=1
          Length = 459

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 42/80 (52%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAVAPSVSAYDREGRAG---------- 336
           P+IYGRGPTPAGMAM+PM+LPDGRIGYVLQQ G       S     GR G          
Sbjct: 381 PLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPSHQRSSGRGGSGSGSKSGGS 440

Query: 335 -GRGPHCQKQAGNSRRYNPY 279
             RG H     G+ RRY+PY
Sbjct: 441 SSRGRH-NNDGGHGRRYHPY 459


>tr|B4F9N8|B4F9N8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 467

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 39/69 (56%), Positives = 44/69 (63%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAVAPSVSAYDREGRAGGRGPHCQKQA 306
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ G    P       + R  GRG       
Sbjct: 404 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPPPPPPRRGSDRRDSGRGGE----- 458

Query: 305 GNSRRYNPY 279
           G+SRRY PY
Sbjct: 459 GHSRRYRPY 467


>tr|A9NVU4|A9NVU4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 506

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 44/87 (50%), Positives = 49/87 (56%), Gaps = 18/87 (20%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAVAPSVSAYDREGRA----------- 339
           PVIYGRGPTP GM MVPM+LPDGR+GYVLQQ G AV  S + Y  EG A           
Sbjct: 421 PVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPGNAVGGS-APYRSEGSASYGGGSASYRS 479

Query: 338 -------GGRGPHCQKQAGNSRRYNPY 279
                  G +G      +G SRRY PY
Sbjct: 480 SRTSSGSGRQGGGRNSGSGGSRRYRPY 506


>tr|A7PXS3|A7PXS3_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026153001
           PE=4 SV=1
          Length = 476

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 41/77 (53%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQSGTAVAP--------SVSAYDREGRAGGR 330
           PVIYGRGP PAGM MVPM+LPDGRIGYVLQQ G  + P        S  +  ++GR G  
Sbjct: 403 PVIYGRGPMPAGMHMVPMVLPDGRIGYVLQQPGVQMPPPRPRRNERSNGSSGQQGRGGSS 462

Query: 329 GPHCQKQAGNSRRYNPY 279
           G         SRRY PY
Sbjct: 463 G---SGDDNRSRRYRPY 476


>tr|Q53JL6|Q53JL6_ORYSJ RNA recognition motif family protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g14430 PE=4 SV=1
          Length = 465

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 40/72 (55%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQ-SGTAVAPSVSAYDRE--GRAGGRGPHCQ 315
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ  G    P +   DR   G  GG G H  
Sbjct: 401 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRRGDRRDGGSRGGEGSH-- 458

Query: 314 KQAGNSRRYNPY 279
                 RRY PY
Sbjct: 459 -----GRRYRPY 465


>tr|Q0ITI7|Q0ITI7_ORYSJ Os11g0250000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0250000 PE=4 SV=1
          Length = 500

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 40/72 (55%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQ-SGTAVAPSVSAYDRE--GRAGGRGPHCQ 315
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ  G    P +   DR   G  GG G H  
Sbjct: 436 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRRGDRRDGGSRGGEGSH-- 493

Query: 314 KQAGNSRRYNPY 279
                 RRY PY
Sbjct: 494 -----GRRYRPY 500


>tr|A2ZD39|A2ZD39_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35702 PE=4 SV=1
          Length = 468

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 40/72 (55%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQ-SGTAVAPSVSAYDRE--GRAGGRGPHCQ 315
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ  G    P +   DR   G  GG G H  
Sbjct: 404 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPMRRGDRRDGGSRGGEGSH-- 461

Query: 314 KQAGNSRRYNPY 279
                 RRY PY
Sbjct: 462 -----GRRYRPY 468


>tr|Q8W2R4|Q8W2R4_ORYSA Putative RNA-binding protein OS=Oryza sativa
           GN=OSJNBa0028C16.8 PE=4 SV=1
          Length = 472

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 40/72 (55%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQ-SGTAVAPSVSAYDRE--GRAGGRGPHCQ 315
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ  G    P     DR   G  GG G H  
Sbjct: 408 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPPRRGDRRDGGSRGGEGSH-- 465

Query: 314 KQAGNSRRYNPY 279
                 RRY PY
Sbjct: 466 -----GRRYRPY 472


>tr|Q7XGR3|Q7XGR3_ORYSJ Os10g0151800 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0151800 PE=4 SV=1
          Length = 472

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 40/72 (55%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
 Frame = -3

Query: 485 PVIYGRGPTPAGMAMVPMMLPDGRIGYVLQQ-SGTAVAPSVSAYDRE--GRAGGRGPHCQ 315
           P+IYGRGP PAGM MVPM+LPDGR+GYVLQQ  G    P     DR   G  GG G H  
Sbjct: 408 PMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIPPPPPPRRGDRRDGGSRGGEGSH-- 465

Query: 314 KQAGNSRRYNPY 279
                 RRY PY
Sbjct: 466 -----GRRYRPY 472