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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913738
Clone id YMU001_000033_F12
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGACGCGTCTCGAGCAGCAATGTCTCTCTGCCTACAAATTACATAAAAAATGACACTTG
TCTGCTGCCTTTCCGTCGCCCCCATCCCTCTGCCCTCTTCCGCAAACCTTGCTTGCTTCT
CATACTTCTGAGTGACCTTCTTCGTCGTCGAGTAAGTGTTGCTTTCTTGTCTGCTTTGCT
GTATGTTAGGGTTAAAGTTGTAGGCTATGGACCCTCAAATACATTACCCTTCTTTAAATG
CCCCGGCCGAAACGCCTCTCTCTTCTGATCAGCAGTCGCGCCTGCGCTACCCAGACCCCG
TCTCCATAGATGCCATCACTGCAGATCTTTCCAAGAAGATCGAGGTCTCCCCTGTTGAGG
CATCCGAGACTCTGTTAGTCTCTGTGCCTGACGCCGTCGCTCACCTTGTCGATCGCGAGG
CTAGCCCTCACCTTGCAAGTGGCCCCTTCTCTATTGTTCGTCTTAACCAGGATGGCAACG
GCATTGCTGTCTTTGCACGTGTAGGCAAGGAGCTTCAATGGCCTCTCACAAAGGATCAAG
CAGCAGTAAAGCTCGATCCCTCCCA
■■Homology search results ■■ -
sp_hit_id Q01495
Definition sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor OS=Pichia angusta
Align length 54
Score (bit) 33.5
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913738|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F12.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor OS=Pi...    33   0.75 
sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debar...    32   2.8  
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or...    30   6.4  
sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2 O...    30   8.3  

>sp|Q01495|PEX5_PICAN Peroxisomal targeting signal receptor
           OS=Pichia angusta GN=PEX5 PE=3 SV=1
          Length = 569

 Score = 33.5 bits (75), Expect = 0.75
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 205 AYNFNPNIQQSRQESNTYSTTKKVTQKYEKQARFAEEGRGMGATERQQTSVIFY 44
           A N NP+IQ      + +S  K+VTQ + K A+ + EG  M +  +    V+FY
Sbjct: 378 ARNANPDIQAD----DRFSLNKRVTQLFIKAAQLSPEGANMDSEVQTGLGVLFY 427


>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16
           OS=Debaryomyces hansenii GN=SEC16 PE=3 SV=2
          Length = 2130

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 204 AMDPQIHYPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKK 338
           +M P++H PS+NA    P+ +++Q+ +    P+S    T  L KK
Sbjct: 620 SMPPKLHSPSMNAVGSVPVPNEKQATM--SQPLSAAVSTQGLQKK 662


>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza
           sativa subsp. japonica GN=U2AF65A PE=2 SV=2
          Length = 574

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 462 DEQ*RRGHLQGEG*PRDRQGERRRQAQRLTESRMPQQGRPRSS 334
           D   RRGH       RDR G RR +++    SR P +GR R S
Sbjct: 124 DRDRRRGHDSERRRDRDRDGHRRHRSR----SRSPSKGRDRRS 162


>sp|Q5ZQU2|NPAS2_CHICK Neuronal PAS domain-containing protein 2
           OS=Gallus gallus GN=NPAS2 PE=2 SV=1
          Length = 815

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 4   TRLEQQCLSAYKLHKK*HLSAAFPSPPSLCPLPQTLL 114
           T   QQ LSA++L +   L A+ PS PS   LPQ LL
Sbjct: 443 TSSTQQDLSAHRLSQPTALQASLPSQPSCELLPQQLL 479
tr_hit_id A9TKT2
Definition tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 76
Score (bit) 92.0
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913738|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_F12.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella paten...    92   2e-17
tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella paten...    84   7e-15
tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia si...    83   1e-14
tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment) OS=Physcomit...    83   1e-14
tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   2e-14
tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome...    80   8e-14
tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome ...    78   4e-13
tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.11...    77   5e-13
tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   6e-13
tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.2...    74   4e-12
tr|Q94II1|Q94II1_ARATH ERD7 protein (Fragment) OS=Arabidopsis th...    67   5e-10
tr|Q8LA30|Q8LA30_ARATH Putative senescence-associated protein 12...    67   5e-10
tr|O48832|O48832_ARATH Putative senescence-related protein (Prob...    67   5e-10
tr|A9U2N3|A9U2N3_PHYPA Predicted protein OS=Physcomitrella paten...    67   5e-10
tr|B8LK66|B8LK66_PICSI Putative uncharacterized protein OS=Picea...    62   2e-08
tr|A9RJ80|A9RJ80_PHYPA Predicted protein OS=Physcomitrella paten...    61   4e-08
tr|A7PEH2|A7PEH2_VITVI Chromosome chr11 scaffold_13, whole genom...    61   4e-08
tr|B8A0G0|B8A0G0_MAIZE Putative uncharacterized protein OS=Zea m...    60   6e-08
tr|B6UCD3|B6UCD3_MAIZE Senescence-associated protein 12 OS=Zea m...    60   6e-08
tr|Q8SB36|Q8SB36_ORYSA Putative senescence-associated protein OS...    59   1e-07
tr|Q5Z9N6|Q5Z9N6_ORYSJ Os06g0717100 protein OS=Oryza sativa subs...    59   1e-07
tr|Q5JM97|Q5JM97_ORYSJ cDNA clone:001-022-B06, full insert seque...    59   1e-07
tr|B8A8R5|B8A8R5_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A2ZXD7|A2ZXD7_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A2YH10|A2YH10_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A9NV63|A9NV63_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|Q9LVE6|Q9LVE6_ARATH Similarity to senescence-associated prote...    59   2e-07
tr|Q3EB29|Q3EB29_ARATH Uncharacterized protein At3g21600.2 OS=Ar...    59   2e-07
tr|B4F8T3|B4F8T3_MAIZE Putative uncharacterized protein OS=Zea m...    57   9e-07
tr|Q10P99|Q10P99_ORYSJ Os03g0241900 protein OS=Oryza sativa subs...    56   1e-06

>tr|A9TKT2|A9TKT2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196034 PE=4 SV=1
          Length = 408

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 42/76 (55%), Positives = 55/76 (72%)
 Frame = +3

Query: 336 KIEVSPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKEL 515
           K + +P++  E  LV+VPDA+ HLVD + SPHLA+  FS+VR+ Q GNGI V  RVG++L
Sbjct: 9   KDDDTPLDPREECLVTVPDAIVHLVDDQQSPHLATAHFSVVRITQKGNGIVVLVRVGEDL 68

Query: 516 QWPLTKDQAAVKLDPS 563
            WPL KD   VKLDP+
Sbjct: 69  HWPLMKDMPTVKLDPT 84


>tr|A9U3E2|A9U3E2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200827 PE=4 SV=1
          Length = 430

 Score = 83.6 bits (205), Expect = 7e-15
 Identities = 52/114 (45%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
 Frame = +3

Query: 231 SLNAPAETPLSSDQQSRLRYPDPVS-----IDAITADLSKKIEVSPVEASETLLVSVPDA 395
           SL    ++P  S+  S L YP   S       A  AD++     SPV A E LLV++P A
Sbjct: 15  SLKIRPQSPFPSNASSSL-YPKIQSEGRPPAAAAAADMASGSANSPVGAFEELLVTIPGA 73

Query: 396 VAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAAVKLD 557
           + HLVD + S  LASG FSIVR+NQ    I V  R G  LQWPL  D+  VKLD
Sbjct: 74  LVHLVDDQESVLLASGDFSIVRINQQNQRIVVLVRAGDSLQWPLVSDEQVVKLD 127


>tr|B5TV63|B5TV63_CAMSI Senescence-related protein OS=Camellia
           sinensis PE=2 SV=1
          Length = 448

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 39/72 (54%), Positives = 52/72 (72%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           S +E+SE +L+ VP  + HL+D+E S  LA G  +IVRL Q GN +AV AR+  ++QWPL
Sbjct: 60  SQLESSEEILIRVPGTIVHLIDKEQSVELACGELTIVRLLQGGNVVAVLARIDDQIQWPL 119

Query: 528 TKDQAAVKLDPS 563
            KD+AAVKLD S
Sbjct: 120 AKDEAAVKLDES 131


>tr|A9RAW2|A9RAW2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23136 PE=4 SV=1
          Length = 366

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 41/69 (59%), Positives = 49/69 (71%)
 Frame = +3

Query: 357 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 536
           EASE +LV +  AV HLVD + SP L  G FSIV + Q GNG+  F RVG +L+WPLTKD
Sbjct: 1   EASEEVLVRIRGAVVHLVDDQKSPLLGDGDFSIVLIEQAGNGLVTFVRVGDKLRWPLTKD 60

Query: 537 QAAVKLDPS 563
           + AVKLD S
Sbjct: 61  EPAVKLDSS 69


>tr|A9RD05|A9RD05_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23114 PE=4 SV=1
          Length = 365

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 41/67 (61%), Positives = 47/67 (70%)
 Frame = +3

Query: 357 EASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKD 536
           E SE +LV V  AV HLVD E SP LA G FS+V + Q+GNGI  F +VG  L+WPLTKD
Sbjct: 1   ETSEEVLVRVRGAVVHLVDDEESPLLAEGSFSVVLIEQEGNGIVAFVKVGDNLRWPLTKD 60

Query: 537 QAAVKLD 557
             AVKLD
Sbjct: 61  ALAVKLD 67


>tr|A7QDV5|A7QDV5_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036757001
           PE=4 SV=1
          Length = 395

 Score = 80.1 bits (196), Expect = 8e-14
 Identities = 38/72 (52%), Positives = 53/72 (73%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           +P E+ E +LV +P  + HL+D++ S  LASG  SI+RL Q  N +AV ARVG+E+QWPL
Sbjct: 59  APPESLEEVLVMLPGVILHLIDKQYSVELASGDLSIIRLWQGNNIVAVLARVGQEIQWPL 118

Query: 528 TKDQAAVKLDPS 563
            KD+A+VK+D S
Sbjct: 119 AKDEASVKVDGS 130


>tr|A7P8A4|A7P8A4_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036107001
           PE=4 SV=1
          Length = 410

 Score = 77.8 bits (190), Expect = 4e-13
 Identities = 38/66 (57%), Positives = 48/66 (72%)
 Frame = +3

Query: 366 ETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAA 545
           E +LV V  A+ HL+D++ S  LASG  +IVRL Q  N +AV AR+G E+QWPL KD+AA
Sbjct: 70  EEVLVRVSGAIVHLIDKQHSVELASGVLTIVRLRQGENVVAVLARIGDEIQWPLAKDEAA 129

Query: 546 VKLDPS 563
           VKLD S
Sbjct: 130 VKLDES 135


>tr|O65635|O65635_ARATH Putative uncharacterized protein T19K4.110
           (Putative uncharacterized protein AT4g35980)
           OS=Arabidopsis thaliana GN=T19K4.110 PE=2 SV=1
          Length = 512

 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 45/113 (39%), Positives = 67/113 (59%)
 Frame = +3

Query: 225 YPSLNAPAETPLSSDQQSRLRYPDPVSIDAITADLSKKIEVSPVEASETLLVSVPDAVAH 404
           YPS+N        +D  + + +PDP + D+ +A         P  A+E +++++  A+ H
Sbjct: 39  YPSINV-------NDLVNNI-FPDPTASDSASA---------PPLATEEVILTIHGAMVH 81

Query: 405 LVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLTKDQAAVKLDPS 563
           L+D+  S  LA G   I+RL Q    +AVFARVG E+QWPLTKD+ AVK+D S
Sbjct: 82  LIDKSYSVELACGDLEILRLVQGDITVAVFARVGDEIQWPLTKDEPAVKVDES 134


>tr|A9RSE9|A9RSE9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22416 PE=4 SV=1
          Length = 371

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 37/71 (52%), Positives = 46/71 (64%)
 Frame = +3

Query: 351 PVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPLT 530
           P+   E  L S P A+ +LVD + SPHLA+  FSIVR+ Q GN   V  RVG++L WPL 
Sbjct: 7   PLNPREECLFSTPVAIVYLVDEQQSPHLATDYFSIVRITQKGNDSVVIVRVGEDLHWPLM 66

Query: 531 KDQAAVKLDPS 563
           KD   VKLDP+
Sbjct: 67  KDVPTVKLDPT 77


>tr|Q9SD22|Q9SD22_ARATH Putative uncharacterized protein F24M12.290
           (AT3g51250/F24M12_290) OS=Arabidopsis thaliana
           GN=F24M12.290 PE=2 SV=1
          Length = 463

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 35/72 (48%), Positives = 51/72 (70%)
 Frame = +3

Query: 348 SPVEASETLLVSVPDAVAHLVDREASPHLASGPFSIVRLNQDGNGIAVFARVGKELQWPL 527
           +P +A+E +L+ VP A+ +L+D+  S  LA G F+IVR+ Q  N +AV A VG E+QWPL
Sbjct: 69  APPQATEEVLIRVPGAILNLIDKSYSVELACGDFTIVRIIQGQNIVAVLANVGNEIQWPL 128

Query: 528 TKDQAAVKLDPS 563
           TK++ A K+D S
Sbjct: 129 TKNEVAAKVDGS 140