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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913741
Clone id YMU001_000033_G03
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACGTAGTGAGAATGACTTTTGACAACAGCTGAAATTTGCAAGCTTATGAGAAGTAGCCC
ATTGTCTGTCTATAAGAAGACTTAAAGCTCAGCAATTACAGTGTACATCTGAACAGGTGA
AGCTCATATCATCGCTGACTCGCTAAAAAGGATCACAAAAAGATGAATATCATGAATGAC
TGTAAAAAAGAAGCCCAGTCAACTCTTGCCATTCCAGACTACTAATTTGAGCAATCGGCA
GCCACTCTTGCCATTCCAGACGCTCCAATTGCAGGCTTCAATCATGGATCATTACAAAGG
CCTTCAAGAAACAAATCATAAAAAGAAAAAACCCAGTAACATCATTATCATCTTCGTTGC
CCTACGAATCCTGGATCTCCTCTACGGCCTCATTATCCACAACCCATCTCGATACAAGAG
GGAATAGGGCTGAACGGCCACCATCACGCTATACCACCTTCAACAGGCAAGTATACTCTC
CAC
■■Homology search results ■■ -
sp_hit_id P50105
Definition sp|P50105|TAF4_YEAST Transcription initiation factor TFIID subunit 4 OS=Saccharomyces cerevisiae
Align length 29
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913741|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G03.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50105|TAF4_YEAST Transcription initiation factor TFIID subun...    32   1.5  
sp|A6ZM67|TAF4_YEAS7 Transcription initiation factor TFIID subun...    32   1.5  
sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=...    31   3.4  
sp|Q9C073|F117A_HUMAN Protein FAM117A OS=Homo sapiens GN=FAM117A...    30   4.4  
sp|Q2VWA4|CORL2_HUMAN Ladybird homeobox corepressor 1-like prote...    30   4.4  
sp|P13709|FSH_DROME Homeotic protein female sterile OS=Drosophil...    30   5.7  
sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus lae...    29   9.8  

>sp|P50105|TAF4_YEAST Transcription initiation factor TFIID subunit
           4 OS=Saccharomyces cerevisiae GN=TAF4 PE=1 SV=1
          Length = 388

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 339 TSLSSSLPYESWISSTASLSTTHLDTRGN 425
           + LS SLP  S I STA +S+TH D  GN
Sbjct: 41  SELSHSLPSPSQIKSTAHVSSTHNDAAGN 69


>sp|A6ZM67|TAF4_YEAS7 Transcription initiation factor TFIID subunit
           4 OS=Saccharomyces cerevisiae (strain YJM789) GN=TAF4
           PE=3 SV=1
          Length = 388

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 339 TSLSSSLPYESWISSTASLSTTHLDTRGN 425
           + LS SLP  S I STA +S+TH D  GN
Sbjct: 41  SELSHSLPSPSQIKSTAHVSSTHNDAAGN 69


>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
            PE=1 SV=2
          Length = 3584

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +1

Query: 280  NHGSLQRPSRNKS*KEKTQ*HHYHLRCPTNPGSPLRPHYPQPISIQEGIGLNGHHHAIPP 459
            +H  L +  + +  +++ Q  HYH         P +PHY      Q+   LNG H+A   
Sbjct: 2104 SHRQLHKQQQQQQQQQQQQQPHYH---------PHQPHYGLINGHQQHPQLNGKHYAENG 2154

Query: 460  STGKYTLH 483
            ST  Y  H
Sbjct: 2155 STAGYHPH 2162


>sp|Q9C073|F117A_HUMAN Protein FAM117A OS=Homo sapiens GN=FAM117A
           PE=2 SV=1
          Length = 453

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 358 CPTNPGSPLRPHYPQP 405
           CP+NPGSPL P  P+P
Sbjct: 401 CPSNPGSPLPPASPRP 416


>sp|Q2VWA4|CORL2_HUMAN Ladybird homeobox corepressor 1-like protein
           OS=Homo sapiens GN=CORL2 PE=1 SV=2
          Length = 1001

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 340 HHYHLRCPTNPGSPLRPHYPQPISIQEGIGLNGHHHAIPP 459
           HH+H   P  P SPL    PQP    +  G   HH A PP
Sbjct: 662 HHHHHHHPPQPPSPLLLLPPQP----DEPGSERHHPAPPP 697


>sp|P13709|FSH_DROME Homeotic protein female sterile OS=Drosophila
            melanogaster GN=fs(1)h PE=1 SV=2
          Length = 2038

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 306  KKQIIKRKNPVTSLSSSLPYESWISSTASLSTTHLDTRGNRAERPPSR 449
            K + ++  NPV+S SSS    S  SS +S S +     G+  ERPP +
Sbjct: 1068 KVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRK 1115


>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis
           GN=rax-A PE=2 SV=1
          Length = 322

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 336 VTSLSSSLPYESWISSTASLSTTHLDTRGNRAERPPS 446
           +++LSSSLP +SW++ T S ST  L +       PPS
Sbjct: 215 MSALSSSLPLDSWLTPTLSNSTA-LQSLPGFVTTPPS 250
tr_hit_id B0WUA0
Definition tr|B0WUA0|B0WUA0_CULQU Microtubule-associated serine/threonine-protein kinase 1 OS=Culex quinquefasciatus
Align length 48
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913741|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G03.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0WUA0|B0WUA0_CULQU Microtubule-associated serine/threonine-p...    36   1.1  
tr|B0S1E9|B0S1E9_FINM2 Putative uncharacterized protein OS=Fineg...    34   3.1  
tr|Q2H166|Q2H166_CHAGB Predicted protein OS=Chaetomium globosum ...    33   5.3  
tr|B4JKH6|B4JKH6_DROGR GH12663 OS=Drosophila grimshawi GN=GH1266...    33   9.1  

>tr|B0WUA0|B0WUA0_CULQU Microtubule-associated
           serine/threonine-protein kinase 1 OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ011012 PE=4 SV=1
          Length = 1972

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 334 Q*HHYHLRCPTNPGSPLRPHY---PQPISIQEGIGLNGHHHAIPPSTG 468
           Q HH+H      P SPL PHY   PQP+S+Q         H++   TG
Sbjct: 448 QQHHHHSLQHNPPVSPLAPHYQHSPQPLSLQSHATHCNSPHSVKSGTG 495


>tr|B0S1E9|B0S1E9_FINM2 Putative uncharacterized protein
           OS=Finegoldia magna (strain ATCC 29328) GN=FMG_0771 PE=4
           SV=1
          Length = 137

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 91  SNYSVHLNR*SSYHR*LAKKDHKKMNIMNDCKKEAQST 204
           +NY +H+N   SYH+    K+++K   + D +K+  +T
Sbjct: 18  ANYFIHMNNSKSYHKNFRNKNYRKKKTLEDLRKDKSNT 55


>tr|Q2H166|Q2H166_CHAGB Predicted protein OS=Chaetomium globosum
           GN=CHGG_04480 PE=4 SV=1
          Length = 388

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +1

Query: 256 PDAPIAGFNHGSLQRPSRNKS*KEKTQ*HHYHLRCPTNPGSPLRPHYPQPISIQEGIGLN 435
           P  P A  +HG LQ PS+ +  + + Q HH  LR    P +P  P Y  P S       +
Sbjct: 209 PPPPAAHAHHGPLQPPSQPQPQQSQPQPHHQQLR----PRAP-PPQYSSPTS-------H 256

Query: 436 GHHHAIPP 459
              H +PP
Sbjct: 257 ARPHPLPP 264


>tr|B4JKH6|B4JKH6_DROGR GH12663 OS=Drosophila grimshawi GN=GH12663
           PE=4 SV=1
          Length = 428

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 340 HHYHLRCPTNPGSPLRPHYPQPISIQEGIGLNGHHHAIPPS 462
           HH H R P +   PL P +P   S+Q    L  H H  P S
Sbjct: 68  HHRHRRHPRSRHRPLAPMHPSASSVQHRCELPTHVHYFPSS 108