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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913749
Clone id YMU001_000033_G11
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATTGAAGGCTCAGCTCGCAGATGTCAAAAAGTTGGAGGAGGAGGATGTGAAGTTACAAA
CCTCCCCGTTGAAATGATTGCAGAACTTGGAGAGCTTGCGATCATGAATAATCGATCAAT
TGGGACTGTCGAAGCTGGCGAGCCAGAATATGTCAGTGCTGATTTCATAGCTTCCTTCCT
TTCACTGCCGGAAGGAGAGGAAGACATATTACAAGAAATTCAAGGTCTAGTCACTACTTC
AGACAGCAGTAAATCACAGGTCAAGCTTCTAAAAGAAGTGGACACAGGGGGCTACCTTCC
TAGAGACGGAGACTTCTTTGAGCTTGACGATCTATCTCCAGTACTTGATCTGGACAGCAA
TGGACAGGGGGAAAGTGGGAAAGACATTTGGGGTTTTGGTTCTGATAGAAACCCTTCCTC
ATCAAGGGGTGCGCTACAGGATGTGACGCTTAGGGGCCTCTCTAAAAGAGAGTNTCGTTC
GGCCAATACCAGTT
■■Homology search results ■■ -
sp_hit_id B0TZP1
Definition sp|B0TZP1|UBIE_FRAP2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017)
Align length 92
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913749|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G11.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0TZP1|UBIE_FRAP2 Ubiquinone/menaquinone biosynthesis methylt...    32   1.2  
sp|Q8G5L0|GLGB_BIFLO 1,4-alpha-glucan-branching enzyme OS=Bifido...    31   2.7  
sp|A4IXH9|UBIE_FRATW Ubiquinone/menaquinone biosynthesis methylt...    31   3.5  
sp|Q0BNE2|UBIE_FRATO Ubiquinone/menaquinone biosynthesis methylt...    31   3.5  
sp|A0Q549|UBIE_FRATN Ubiquinone/menaquinone biosynthesis methylt...    31   3.5  
sp|Q2A524|UBIE_FRATH Ubiquinone/menaquinone biosynthesis methylt...    31   3.5  
sp|A7NAA1|UBIE_FRATF Ubiquinone/menaquinone biosynthesis methylt...    31   3.5  
sp|Q5NFE1|UBIE_FRATT Ubiquinone/menaquinone biosynthesis methylt...    30   6.0  
sp|Q14GU4|UBIE_FRAT1 Ubiquinone/menaquinone biosynthesis methylt...    30   6.0  
sp|Q2K967|SYS_RHIEC Seryl-tRNA synthetase OS=Rhizobium etli (str...    30   6.0  
sp|Q41769|ILVB2_MAIZE Acetolactate synthase 2, chloroplastic OS=...    30   6.0  

>sp|B0TZP1|UBIE_FRAP2 Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella philomiragia
           subsp. philomiragia (strain ATCC 25017) GN=ubiE PE=3
           SV=1
          Length = 250

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  V +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGSQGKVVLSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D +K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKAKALASMCRVLKPGGRL 165


>sp|Q8G5L0|GLGB_BIFLO 1,4-alpha-glucan-branching enzyme
           OS=Bifidobacterium longum GN=glgB PE=3 SV=1
          Length = 737

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 73  NDCRTWRACDHE*SINWDCRSWR 141
           N+   W   DH+ SI+WDC +W+
Sbjct: 583 NELAQWGEWDHDASIDWDCLNWQ 605


>sp|A4IXH9|UBIE_FRATW Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           tularensis (strain WY96-3418) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D  K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGGRL 165


>sp|Q0BNE2|UBIE_FRATO Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           holarctica (strain OSU18) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D  K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGGRL 165


>sp|A0Q549|UBIE_FRATN Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           novicida (strain U112) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D  K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKEKALASMCRVLKPGGRL 165


>sp|Q2A524|UBIE_FRATH Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           holarctica (strain LVS) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D  K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGGRL 165


>sp|A7NAA1|UBIE_FRATF Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           holarctica (strain FTA) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/92 (26%), Positives = 40/92 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
           D +    GL   +D  K+   + + +  GG L
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGGRL 165


>sp|Q5NFE1|UBIE_FRATT Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           tularensis GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGG 292
           D +    GL   +D  K+   + + +  GG
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGG 163


>sp|Q14GU4|UBIE_FRAT1 Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Francisella tularensis subsp.
           tularensis (strain FSC 198) GN=ubiE PE=3 SV=1
          Length = 250

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/90 (25%), Positives = 39/90 (43%)
 Frame = +2

Query: 23  CQKVGGGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEE 202
           CQ VG  G  + +     + E+G+  + N   +G +     EYV A+  A  L  P+   
Sbjct: 81  CQMVGQQGKVILSDINSSMLEVGKEKLTNKGCVGNI-----EYVQAN--AECLPFPDNYF 133

Query: 203 DILQEIQGLVTTSDSSKSQVKLLKEVDTGG 292
           D +    GL   +D  K+   + + +  GG
Sbjct: 134 DCITISFGLRNVTDKDKALASMCRVLKPGG 163


>sp|Q2K967|SYS_RHIEC Seryl-tRNA synthetase OS=Rhizobium etli (strain
           CFN 42 / ATCC 51251) GN=serS PE=3 SV=1
          Length = 427

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +2

Query: 20  RCQKVGGGGCEVTNLPVEMIAE-LGELAI-MNNRSIGTVEAGEPEYVSADFIASFLSLPE 193
           R  K+ G    V   P+  +   LG+  I ++ R  G  E   P  V A+ +    SLP+
Sbjct: 155 RAAKLSGSRFTVLTGPLARLERALGQFMIDLHTREHGYTEVSSPLMVRAEAVFGTGSLPK 214

Query: 194 GEEDILQEIQGLVTTSDSSKSQVKLLKE 277
            EED+ +   G      +  +   L++E
Sbjct: 215 FEEDLFKTTDGRYLIPTAEVTLTNLVRE 242
tr_hit_id B0C6Q7
Definition tr|B0C6Q7|B0C6Q7_ACAM1 Methyltransferase, putative OS=Acaryochloris marina (strain MBIC 11017)
Align length 95
Score (bit) 40.0
E-value 0.06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913749|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G11.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0C6Q7|B0C6Q7_ACAM1 Methyltransferase, putative OS=Acaryochlo...    40   0.060
tr|Q054X6|Q054X6_LEPBL UDP-N-acetylglucosamine diphosphorylase O...    36   0.86 
tr|Q04Q07|Q04Q07_LEPBJ UDP-N-acetylglucosamine diphosphorylase O...    36   0.86 
tr|A6DD90|A6DD90_9PROT Putative uncharacterized protein OS=Camin...    34   4.3  
tr|A3WHY1|A3WHY1_9SPHN Putative uncharacterized protein OS=Eryth...    34   4.3  
tr|Q0BWX3|Q0BWX3_HYPNA Chemotaxis MotA protein OS=Hyphomonas nep...    33   7.3  
tr|Q82GN1|Q82GN1_STRAW Putative acetyl/propionyl CoA carboxylase...    33   9.5  

>tr|B0C6Q7|B0C6Q7_ACAM1 Methyltransferase, putative OS=Acaryochloris
           marina (strain MBIC 11017) GN=AM1_2606 PE=4 SV=1
          Length = 263

 Score = 40.0 bits (92), Expect = 0.060
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +2

Query: 20  RCQKVGGGGCEVTNLPVEMIAELGELAI--MNNRSIGTVEAGEPEYVSADFIASFLSLPE 193
           RC +VG G   +T     M+ E G++    ++ R +  +EAG  E V  D     L L +
Sbjct: 45  RCLEVGAGAGSITQWMAGMVGEKGQVVAVDLDTRFVANLEAGNVEVVEGDI--QHLPLDK 102

Query: 194 GEEDILQEIQGLVTTSDSSKSQVKLLKEVDTGGYL 298
              D++     L+   D+     KLL+ V  GG++
Sbjct: 103 QSFDLVHARYVLIHNPDAHAFLSKLLELVKPGGWI 137


>tr|Q054X6|Q054X6_LEPBL UDP-N-acetylglucosamine diphosphorylase
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain L550) GN=glmU PE=4 SV=1
          Length = 252

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
 Frame = +2

Query: 50  EVTNLPVEMIAELGELAIMNNRSIGTV--EAGEPEYVSADFIASFLSLPEGEEDILQEIQ 223
           E+ N    +I   G++ ++ +++   +  E  E E+ SA  +++ +  P G   I++   
Sbjct: 94  ELKNFQGSVIVACGDVPMITSKTFADIVKEHRENEF-SATILSAVVEKPTGYGRIIRNAS 152

Query: 224 GLVTT---SDSSKSQVKLLKEVDTGGYLPRDGDFFE 322
           G VT       S S+ KL+ E++TG Y+    D F+
Sbjct: 153 GDVTAIVEEKDSSSEEKLINEINTGTYVFEGEDLFD 188


>tr|Q04Q07|Q04Q07_LEPBJ UDP-N-acetylglucosamine diphosphorylase
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain JB197) GN=glmU PE=4 SV=1
          Length = 252

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
 Frame = +2

Query: 50  EVTNLPVEMIAELGELAIMNNRSIGTV--EAGEPEYVSADFIASFLSLPEGEEDILQEIQ 223
           E+ N    +I   G++ ++ +++   +  E  E E+ SA  +++ +  P G   I++   
Sbjct: 94  ELKNFQGSVIVACGDVPMITSKTFADIVKEHRENEF-SATILSAVVEKPTGYGRIIRNAS 152

Query: 224 GLVTT---SDSSKSQVKLLKEVDTGGYLPRDGDFFE 322
           G VT       S S+ KL+ E++TG Y+    D F+
Sbjct: 153 GDVTAIVEEKDSSSEEKLINEINTGTYVFEGEDLFD 188


>tr|A6DD90|A6DD90_9PROT Putative uncharacterized protein
           OS=Caminibacter mediatlanticus TB-2 GN=CMTB2_08272 PE=4
           SV=1
          Length = 267

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = +2

Query: 113 RSIGTVEAGEPEYVSADFIASFLSLPEGEEDILQEIQGLVTTSDSSKSQVKLL------K 274
           ++I ++E G    V A+F    + L +    +  EI+ L+   D++KS++  L      K
Sbjct: 161 KTIKSIEVGVKNGVIAEF--KLIRLKDSLNSLDIEIENLLINIDNTKSEIYKLTKVYLNK 218

Query: 275 EVDTGGYLPRDGDFF 319
           E++   +LP+  DFF
Sbjct: 219 EIEINSFLPKKRDFF 233


>tr|A3WHY1|A3WHY1_9SPHN Putative uncharacterized protein
           OS=Erythrobacter sp. NAP1 GN=NAP1_09202 PE=4 SV=1
          Length = 150

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = +2

Query: 53  VTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEGEEDILQEIQGLV 232
           +  L  E+ A  G+ A++ N  I   + GE E   A F A+  S    E   L+ + G  
Sbjct: 61  IAALEAELEAHPGDPALLINLGIAHAQIGETEKARASFEAAMRSR---EVLDLETVNG-- 115

Query: 233 TTSDSSKSQVKLLKEVDTGGYLP 301
           TT+DS +   K +  +D G +LP
Sbjct: 116 TTTDSRRLARKAIAMLDRGEFLP 138


>tr|Q0BWX3|Q0BWX3_HYPNA Chemotaxis MotA protein OS=Hyphomonas
           neptunium (strain ATCC 15444) GN=HNE_3347 PE=4 SV=1
          Length = 291

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 38  GGGCEVTNLPVEMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSLPEG 196
           GGG  +T  P  M A   ELA++   +IGTV  G    V+ + +A F+   +G
Sbjct: 15  GGGLALTGGPAAMHALPFELALIGGAAIGTVMLGNSPAVAREALAGFVRAFQG 67


>tr|Q82GN1|Q82GN1_STRAW Putative acetyl/propionyl CoA carboxylase
           alpha subunit OS=Streptomyces avermitilis GN=accA2 PE=4
           SV=1
          Length = 616

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 71  EMIAELGELAIMNNRSIGTVEAGEPEYVSADFIASFLSL 187
           E+ AEL ELAI   R++G   AG  E++ AD  A FL +
Sbjct: 233 ELTAELHELAIRAARAVGYTGAGTVEFLVADGRAHFLEM 271