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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913750
Clone id YMU001_000033_G12
Library
Length 269
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCAGAGCAATGATTCCAAGAGACCTCAAAGATACATCCAACGAATTTTGAATCTTGCTAC
TGAAGAGGTTAAAGTCCACAAGTTATGAACTCAATGAGTTGGGACTTAAGAGGGCCTTCC
AAAGGCTTTCAAACATTGTTGTTTGAGGGTCGCTCACAAAAGAACCCTTTCCATGGCCCT
CTAAAGTCATAGCCAAATCCGAAGGTGTTGCTGCCTTGGGGGGTGGTTGAACCACCCTCC
ACATTTGCCTCTCACCTCCGTGACTGGTG
■■Homology search results ■■ -
sp_hit_id P52236
Definition sp|P52236|CCMG_PARDP Thiol:disulfide interchange protein dsbE homolog OS=Paracoccus denitrificans (strain Pd 1222)
Align length 48
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913750|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G12.
         (269 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52236|CCMG_PARDP Thiol:disulfide interchange protein dsbE ho...    30   2.9  
sp|A9KHD9|G6PI_CLOPH Glucose-6-phosphate isomerase OS=Clostridiu...    30   3.8  
sp|P47790|MYPR_TAEGU Myelin proteolipid protein OS=Taeniopygia g...    29   8.4  
sp|P60203|MYPR_RAT Myelin proteolipid protein OS=Rattus norvegic...    29   8.4  
sp|P47789|MYPR_RABIT Myelin proteolipid protein OS=Oryctolagus c...    29   8.4  
sp|Q5R6E6|MYPR_PONAB Myelin proteolipid protein OS=Pongo abelii ...    29   8.4  
sp|Q712P7|MYPR_PIG Myelin proteolipid protein OS=Sus scrofa GN=P...    29   8.4  
sp|P60202|MYPR_MOUSE Myelin proteolipid protein OS=Mus musculus ...    29   8.4  
sp|P60201|MYPR_HUMAN Myelin proteolipid protein OS=Homo sapiens ...    29   8.4  
sp|P23289|MYPR_CHICK Myelin proteolipid protein OS=Gallus gallus...    29   8.4  
sp|P23294|MYPR_CANFA Myelin proteolipid protein OS=Canis familia...    29   8.4  
sp|P04116|MYPR_BOVIN Myelin proteolipid protein OS=Bos taurus GN...    29   8.4  
sp|Q5QMZ9|HOX29_ORYSJ Homeobox-leucine zipper protein HOX29 OS=O...    29   8.4  
sp|A2WLR5|HOX29_ORYSI Homeobox-leucine zipper protein HOX29 OS=O...    29   8.4  
sp|Q05852|GTAB_BACSU UTP--glucose-1-phosphate uridylyltransferas...    29   8.4  

>sp|P52236|CCMG_PARDP Thiol:disulfide interchange protein dsbE
           homolog OS=Paracoccus denitrificans (strain Pd 1222)
           GN=ccmG PE=3 SV=2
          Length = 179

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 103 DLRGPSKGFQTLLFEGRSQKNPFHGPLKS*PNPKVLLPWGVVEPPSTF 246
           DL+ P       L E     +PFH  L + P  +V + WGV  PP TF
Sbjct: 100 DLKDPEGAALGFLSE---HGDPFHA-LAADPRGRVAIDWGVTAPPETF 143


>sp|A9KHD9|G6PI_CLOPH Glucose-6-phosphate isomerase OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=pgi PE=3 SV=1
          Length = 449

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 217 KAATPSDLAMTLEGHGKGSFVSDPQTTMFESL 122
           K   P+ + +T + H  G F+ D Q TMFE++
Sbjct: 297 KGIFPASVDLTTDLHSMGQFIQDGQRTMFETV 328


>sp|P47790|MYPR_TAEGU Myelin proteolipid protein OS=Taeniopygia
           guttata GN=PLP1 PE=2 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSWQRVCHCLGKWLGHP 149


>sp|P60203|MYPR_RAT Myelin proteolipid protein OS=Rattus norvegicus
           GN=Plp1 PE=1 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|P47789|MYPR_RABIT Myelin proteolipid protein OS=Oryctolagus
           cuniculus GN=PLP1 PE=1 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|Q5R6E6|MYPR_PONAB Myelin proteolipid protein OS=Pongo abelii
           GN=PLP1 PE=2 SV=1
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|Q712P7|MYPR_PIG Myelin proteolipid protein OS=Sus scrofa GN=PLP1
           PE=2 SV=1
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|P60202|MYPR_MOUSE Myelin proteolipid protein OS=Mus musculus
           GN=Plp1 PE=1 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|P60201|MYPR_HUMAN Myelin proteolipid protein OS=Homo sapiens
           GN=PLP1 PE=1 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLERVCHCLGKWLGHP 149


>sp|P23289|MYPR_CHICK Myelin proteolipid protein OS=Gallus gallus
           GN=PLP1 PE=1 SV=2
          Length = 277

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 185 SHSQIRRCCCLGGWLNHP 238
           +HS  R C CLG WL HP
Sbjct: 132 AHSLQRVCQCLGKWLGHP 149
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913750|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_G12.
         (269 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******