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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913751
Clone id YMU001_000033_H01
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTGTTTTTTTTTGGTTTGTAAAATCATCGCCTCTGAATTAAAGAAAACACAGCAAT
CCCCATACACAGTAGTGCTCTGGCACATTTCTATCATGTAAAAGGTAGATCAAAGAAGGG
CCCAATGCAACAATGGCTTTGCCTGGATGCTTGATTATCATTTGCAGTAAAGGTCTGCAA
GAAATTTTCAGCATATCCCATCTTACCGCAACAATGCCGGGTGAAAGATGGACATCCCAA
TCAAGCACGCTAGGATTGCACAGAGAAATCTGTAAATCTTTGAAGAAGACCCCCTCCTCA
CCTCCACATAATGAGCAAGGCCAAAGAAGTTACTGCCAAAATCCTGTTCCGGGCAACTAT
TACATCACCTTGATTAACACTTGGAGAAGAAGCTGATGACACAGACAAAGCTACCGCAGG
TGGAGGGGGAGGTGAAGTATTGCCTGCTCCTCCAAAAGGAAGCCTCACATTTGTACAATC
AGCACCTATTGAACATTTGCGAATGCAGTATCCATCCGCT
■■Homology search results ■■ -
sp_hit_id Q9CZV5
Definition sp|Q9CZV5|ST65G_MOUSE STAGA complex 65 subunit gamma OS=Mus musculus
Align length 82
Score (bit) 29.6
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913751|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_H01.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CZV5|ST65G_MOUSE STAGA complex 65 subunit gamma OS=Mus musc...    30   8.3  

>sp|Q9CZV5|ST65G_MOUSE STAGA complex 65 subunit gamma OS=Mus
           musculus GN=Supt7l PE=2 SV=1
          Length = 412

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +3

Query: 105 PNATMALPGCLIII----CSKGLQEIFSISH---LTATMPGERWTSQSSTLGLHREICKS 263
           P+A    P  ++ I    CS  +  I  I H   L + +   +  SQ  T G+  E  + 
Sbjct: 40  PSANKPKPPTMLDIPSEPCSLTIHTIQLIQHNRRLRSLIATAQTQSQQQTEGVKAEESEP 99

Query: 264 LKKTPSSPPHNEQGQRSYCQNP 329
           L   P SPP  +  Q   C+NP
Sbjct: 100 LPSCPGSPPLPDDLQPLDCKNP 121
tr_hit_id Q7XS31
Definition tr|Q7XS31|Q7XS31_ORYSJ OSJNBa0072D21.2 protein OS=Oryza sativa subsp. japonica
Align length 68
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913751|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_H01.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XS31|Q7XS31_ORYSJ OSJNBa0072D21.2 protein OS=Oryza sativa s...    35   1.5  
tr|Q0JDS3|Q0JDS3_ORYSJ Os04g0381000 protein OS=Oryza sativa subs...    35   1.5  
tr|A2XSM8|A2XSM8_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|B8GFF1|B8GFF1_9EURY Putative uncharacterized protein OS=Candi...    34   4.5  

>tr|Q7XS31|Q7XS31_ORYSJ OSJNBa0072D21.2 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0072D21.2 PE=3 SV=2
          Length = 800

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = -3

Query: 289 GGEEGVFFKDLQISLCNPSVLDWDVHLSPGIVAV----RWDMLKISCRPLLQMIIKHPGK 122
           GG +GV  K +++ + +P+VLD  +   PGI  V    +   ++   R ++   IKHP  
Sbjct: 126 GGNKGVSEKQIRLKIFSPNVLDITLVDLPGITRVPVGDQPSDIESRIRSMIMQYIKHPSC 185

Query: 121 AIVALGPS 98
            I+A+ P+
Sbjct: 186 IILAVTPA 193


>tr|Q0JDS3|Q0JDS3_ORYSJ Os04g0381000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0381000 PE=2 SV=1
          Length = 797

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = -3

Query: 289 GGEEGVFFKDLQISLCNPSVLDWDVHLSPGIVAV----RWDMLKISCRPLLQMIIKHPGK 122
           GG +GV  K +++ + +P+VLD  +   PGI  V    +   ++   R ++   IKHP  
Sbjct: 126 GGNKGVSEKQIRLKIFSPNVLDITLVDLPGITRVPVGDQPSDIESRIRSMIMQYIKHPSC 185

Query: 121 AIVALGPS 98
            I+A+ P+
Sbjct: 186 IILAVTPA 193


>tr|A2XSM8|A2XSM8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15615 PE=3 SV=1
          Length = 692

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = -3

Query: 289 GGEEGVFFKDLQISLCNPSVLDWDVHLSPGIVAV----RWDMLKISCRPLLQMIIKHPGK 122
           GG +GV  K +++ + +P+VLD  +   PGI  V    +   ++   R ++   IKHP  
Sbjct: 98  GGNKGVSEKQIRLKIFSPNVLDITLVDLPGITRVPVGDQPSDIESRIRSMIMQYIKHPSC 157

Query: 121 AIVALGPS 98
            I+A+ P+
Sbjct: 158 IILAVTPA 165


>tr|B8GFF1|B8GFF1_9EURY Putative uncharacterized protein
           OS=Candidatus Methanosphaerula palustris E1-9c
           GN=Mpal_0628 PE=4 SV=1
          Length = 227

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 126 PGCLI---IICSKGLQEIFSISHLTATMPGERWTSQSSTLGLHREICKSLKKTPSSPPHN 296
           PGCL    +  ++ LQ     S LTA +PG  + S  S    H   C+S +  P+   H 
Sbjct: 55  PGCLQQEELFAARFLQFAADCSKLTAPVPGPDFRSWRSPYVFHFVCCRSREHAPTHHRHP 114

Query: 297 EQGQRSYC 320
            Q + S C
Sbjct: 115 LQSRGSLC 122