BP913752
Clone id YMU001_000033_H02
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000033_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGCTGTGTACAGTGGCATTGTTGGCTCTTCTCTGATTCTTTTGTTGATCGTGGCGGCTT
CGTAATTTAGCAAAGGATATGGGAGAGAGGGTTGTAGCCATTTATGCCGAAGGTTGCAGG
CGTCTATCTTCTGAATCGTCATTGATTTAAACACCCTCTGCCCCCATTCCAATGCTTCTT
TGGCCATTTCTTTGATTTCGGCTTCTATGGCCTTGCGCAGCTGCTCTTCTTCTTCTTGTG
TCAGATCTTGTGGCTCTTGAGAGGGTCTTACAAGGATTTCCTCTTGCACTGGTGTGTCCA
CAGGATCTGCCACATTCTCTAAATCTATGCCTTCTATGGCTGCTGGCCCTGTGCTTAACT
GCTCTTCTTCCTACTGGCCTCTCAGTTCTTCTATCTGCTTTTGAAATGTCTGTTTCTCTG
ATTCAGCTTGTTCTCCCATGTTCACGAGGAGGTTGTTCAAATCGGCATTTATCTTCTCTT
CCTCCTCGAGCTTTCTCTTGATGTTTTCCAACTCATCTTACATTGCCTTGTGCTCTT
■■Homology search results ■■ -
sp_hit_id Q8XV37
Definition sp|Q8XV37|RS4_RALSO 30S ribosomal protein S4 OS=Ralstonia solanacearum
Align length 40
Score (bit) 32.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913752|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_H02.
(537 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8XV37|RS4_RALSO 30S ribosomal protein S4 OS=Ralstonia solana... 32 1.9
sp|Q1LI62|RS4_RALME 30S ribosomal protein S4 OS=Ralstonia metall... 32 1.9
sp|Q46WG8|RS4_RALEJ 30S ribosomal protein S4 OS=Ralstonia eutrop... 32 1.9
sp|Q0K644|RS4_RALEH 30S ribosomal protein S4 OS=Ralstonia eutrop... 32 1.9
sp|A4SUY5|RS4_POLSQ 30S ribosomal protein S4 OS=Polynucleobacter... 32 2.5
sp|Q13TJ5|RS4_BURXL 30S ribosomal protein S4 OS=Burkholderia xen... 32 2.5
sp|A4JAR5|RS4_BURVG 30S ribosomal protein S4 OS=Burkholderia vie... 32 2.5
sp|Q2SU52|RS4_BURTA 30S ribosomal protein S4 OS=Burkholderia tha... 32 2.5
sp|Q39KE2|RS4_BURS3 30S ribosomal protein S4 OS=Burkholderia sp.... 32 2.5
sp|Q0BJ21|RS4_BURCM 30S ribosomal protein S4 OS=Burkholderia amb... 32 2.5
sp|A0K3Q0|RS4_BURCH 30S ribosomal protein S4 OS=Burkholderia cen... 32 2.5
sp|Q1BRX3|RS4_BURCA 30S ribosomal protein S4 OS=Burkholderia cen... 32 2.5
sp|Q5TKR9|MYST3_RAT Histone acetyltransferase MYST3 OS=Rattus no... 32 2.5
sp|A6T3H9|RS4_JANMA 30S ribosomal protein S4 OS=Janthinobacteriu... 31 4.3
sp|A4G9R4|RS4_HERAR 30S ribosomal protein S4 OS=Herminiimonas ar... 31 4.3
sp|Q12G78|RS4_POLSJ 30S ribosomal protein S4 OS=Polaromonas sp. ... 30 5.7
sp|Q09716|YA3B_SCHPO Uncharacterized protein C18B11.11 OS=Schizo... 30 7.4
sp|A1VJ39|RS4_POLNA 30S ribosomal protein S4 OS=Polaromonas naph... 30 7.4
sp|P0A4C5|RS4_BORPE 30S ribosomal protein S4 OS=Bordetella pertu... 30 7.4
sp|P0A4C7|RS4_BORPA 30S ribosomal protein S4 OS=Bordetella parap... 30 7.4
sp|P0A4C6|RS4_BORBR 30S ribosomal protein S4 OS=Bordetella bronc... 30 7.4
sp|Q2L242|RS4_BORA1 30S ribosomal protein S4 OS=Bordetella avium... 30 7.4
sp|A1TJU1|RS4_ACIAC 30S ribosomal protein S4 OS=Acidovorax avena... 30 7.4
sp|Q8WP33|PFD6L_MACFA Prefoldin subunit 6-like protein OS=Macaca... 30 7.4
sp|P26030|NCAP_MEASY Nucleoprotein OS=Measles virus (strain Yama... 30 7.4
sp|P14732|LMNB2_CHICK Lamin-B2 OS=Gallus gallus GN=LMNB2 PE=2 SV=1 30 7.4
sp|Q1GZC0|SURA_METFK Chaperone surA OS=Methylobacillus flagellat... 30 9.7
sp|Q21QP8|RS4_RHOFD 30S ribosomal protein S4 OS=Rhodoferax ferri... 30 9.7
sp|A2SLD2|RS4_METPP 30S ribosomal protein S4 OS=Methylibium petr... 30 9.7
sp|A1W332|RS4_ACISJ 30S ribosomal protein S4 OS=Acidovorax sp. (... 30 9.7

>sp|Q8XV37|RS4_RALSO 30S ribosomal protein S4 OS=Ralstonia
solanacearum GN=rpsD PE=3 SV=1
Length = 207

Score = 32.0 bits (71), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQK 61


>sp|Q1LI62|RS4_RALME 30S ribosomal protein S4 OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=rpsD PE=3 SV=1
Length = 207

Score = 32.0 bits (71), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQK 61


>sp|Q46WG8|RS4_RALEJ 30S ribosomal protein S4 OS=Ralstonia eutropha
(strain JMP134) GN=rpsD PE=3 SV=1
Length = 207

Score = 32.0 bits (71), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQK 61


>sp|Q0K644|RS4_RALEH 30S ribosomal protein S4 OS=Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=rpsD PE=3 SV=1
Length = 207

Score = 32.0 bits (71), Expect = 1.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGNQLREKQK 61


>sp|A4SUY5|RS4_POLSQ 30S ribosomal protein S4 OS=Polynucleobacter
sp. (strain QLW-P1DMWA-1) GN=rpsD PE=3 SV=1
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRALSDKCKLDTKPGQHGRTSGSRTSDYGNQLREKQK 61


>sp|Q13TJ5|RS4_BURXL 30S ribosomal protein S4 OS=Burkholderia
xenovorans (strain LB400) GN=rpsD PE=3 SV=1
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQK 61


>sp|A4JAR5|RS4_BURVG 30S ribosomal protein S4 OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=rpsD PE=3 SV=2
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQK 61


>sp|Q2SU52|RS4_BURTA 30S ribosomal protein S4 OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=rpsD PE=3 SV=1
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQK 61


>sp|Q39KE2|RS4_BURS3 30S ribosomal protein S4 OS=Burkholderia sp.
(strain 383) GN=rpsD PE=3 SV=1
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQK 61


>sp|Q0BJ21|RS4_BURCM 30S ribosomal protein S4 OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsD PE=3 SV=2
Length = 207

Score = 31.6 bits (70), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2

Query: 497 EKARGGREDKCRFEQPPREHGRTS*IRETDISKADRRTER 378
+ AR DKC+ + P +HGRTS R +D R ++
Sbjct: 22 KSARRSLADKCKLDSKPGQHGRTSGARTSDYGTQLREKQK 61


tr_hit_id B4LRE7
Definition tr|B4LRE7|B4LRE7_DROVI GJ17554 OS=Drosophila virilis
Align length 98
Score (bit) 35.8
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP913752|Adiantum capillus-veneris mRNA, clone:
YMU001_000033_H02.
(537 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4LRE7|B4LRE7_DROVI GJ17554 OS=Drosophila virilis GN=GJ17554 ... 36 1.4
tr|Q502M7|Q502M7_DANRE Asph protein (Fragment) OS=Danio rerio GN... 35 3.2
tr|B0S5J7|B0S5J7_DANRE Aspartate beta-hydroxylase OS=Danio rerio... 35 3.2
tr|A0D1B6|A0D1B6_PARTE Chromosome undetermined scaffold_34, whol... 34 4.2
tr|Q5D8I6|Q5D8I6_SCHJA SJCHGC05883 protein OS=Schistosoma japoni... 33 7.2
tr|A2FD36|A2FD36_TRIVA Viral A-type inclusion protein, putative ... 33 7.2
tr|A0CQ96|A0CQ96_PARTE Chromosome undetermined scaffold_24, whol... 33 9.3
tr|B2G425|B2G425_ZYGRO Uncharacterized protein KLLA0C01276g OS=Z... 33 9.3

>tr|B4LRE7|B4LRE7_DROVI GJ17554 OS=Drosophila virilis GN=GJ17554
PE=4 SV=1
Length = 1501

Score = 35.8 bits (81), Expect = 1.4
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = -3

Query: 514 ELENIKRKLEEEEKINADLNNLLVNMGEQAESEKQTFQKQIXXXXXXXXXXXLSTGPAAI 335
E + +++ LE++++ L LL ++ + +K+ Q+Q+ + PAA
Sbjct: 689 EQQQLQQLLEQQKQEQQQLQQLLEQQKQEEQQQKEKLQEQLAENALPHT----TPTPAAF 744

Query: 334 EGIDLENVADPVDTP----VQEEILVRPSQEPQDLTQE 233
+ D N A+P P + EEI+ + EP L E
Sbjct: 745 DAYDAVNEAEPTPAPPARGLVEEIIATDAVEPIGLPTE 782


>tr|Q502M7|Q502M7_DANRE Asph protein (Fragment) OS=Danio rerio
GN=asph PE=2 SV=1
Length = 443

Score = 34.7 bits (78), Expect = 3.2
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = -3

Query: 517 DELENIKRKLEEEEKINADLNNLLVNMGEQAESEKQTFQKQIXXXXXXXXXXXLSTGPAA 338
++LE ++ +EE E++ E+A E + ++ + + P
Sbjct: 349 EDLEPVEEPVEETEQV------------EEAFEEPEQAEEPVEEIVEIPEEETEESVPTE 396

Query: 337 IEGIDLENVADPVDTPVQEEILVRPSQEPQDLTQEEEEQ 221
E + E+V + VD PVQEE +E QD T+EE E+
Sbjct: 397 -ETVTKEDVTEEVDEPVQEE------EEEQDFTEEEAEE 428


>tr|B0S5J7|B0S5J7_DANRE Aspartate beta-hydroxylase OS=Danio rerio
GN=asph PE=4 SV=1
Length = 472

Score = 34.7 bits (78), Expect = 3.2
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = -3

Query: 517 DELENIKRKLEEEEKINADLNNLLVNMGEQAESEKQTFQKQIXXXXXXXXXXXLSTGPAA 338
++LE ++ +EE E++ E+A E + ++ + + P
Sbjct: 349 EDLEPVEEPVEETEQV------------EEAFEEPEQAEEPVEEIVEIPEEETEESVPTE 396

Query: 337 IEGIDLENVADPVDTPVQEEILVRPSQEPQDLTQEEEEQ 221
E + E+V + VD PVQEE +E QD T+EE E+
Sbjct: 397 -ETVTKEDVTEEVDEPVQEE------EEEQDFTEEEAEE 428


>tr|A0D1B6|A0D1B6_PARTE Chromosome undetermined scaffold_34, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00012357001 PE=4 SV=1
Length = 1033

Score = 34.3 bits (77), Expect = 4.2
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = -3

Query: 517 DELENIKRKLEEEEKINADLNNLLV-NMGEQAESEKQTFQKQIXXXXXXXXXXXLSTGPA 341
++++ + +KL E++ +N DL N+ + E K TF+ I T A
Sbjct: 767 EQIKQLTQKLTEQKLLNEDLQQTYQSNLEIELEKNKNTFENTINLLQEEKDQLKQKTIEA 826

Query: 340 AIEGIDLENVADPVDTPVQEEILVRPSQEPQDLTQEEEEQ 221
E IDL+N +T + ++ L + Q + + E +
Sbjct: 827 IQENIDLQNKLQQFETELLQKQLQLSRIDHQQVVESYENE 866


>tr|Q5D8I6|Q5D8I6_SCHJA SJCHGC05883 protein OS=Schistosoma japonicum
PE=2 SV=1
Length = 383

Score = 33.5 bits (75), Expect = 7.2
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = -3

Query: 517 DELENIKRKLEEEEKINADLNNLLVN 440
D+ E++++ LE ++KINADL NLLV+
Sbjct: 115 DDKESLQKSLELQQKINADLKNLLVS 140


>tr|A2FD36|A2FD36_TRIVA Viral A-type inclusion protein, putative
OS=Trichomonas vaginalis G3 GN=TVAG_355490 PE=4 SV=1
Length = 3977

Score = 33.5 bits (75), Expect = 7.2
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -3

Query: 514 ELENIKRKLEEEEKINADLNNLLVNMGEQAESEKQTFQKQI 392
E EN+K++++E N +LN +N+ + ++EKQ +K I
Sbjct: 290 ETENLKKEIDELNNANKELNVKSINLQQSLDNEKQNNKKMI 330


>tr|A0CQ96|A0CQ96_PARTE Chromosome undetermined scaffold_24, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00009311001 PE=4 SV=1
Length = 1957

Score = 33.1 bits (74), Expect = 9.3
Identities = 13/40 (32%), Positives = 29/40 (72%)
Frame = -3

Query: 514 ELENIKRKLEEEEKINADLNNLLVNMGEQAESEKQTFQKQ 395
E+EN+K+KL E++++ LN+ + + +Q ++++Q Q+Q
Sbjct: 923 EIENLKQKLFFEQELSNQLNDSISELQQQIQTQEQLLQQQ 962


>tr|B2G425|B2G425_ZYGRO Uncharacterized protein KLLA0C01276g
OS=Zygosaccharomyces rouxii GN=Zr_KLLA0C01276g PE=3 SV=1
Length = 381

Score = 33.1 bits (74), Expect = 9.3
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +3

Query: 279 SSCTGVSTGSATFSKSMPSMAAGPVLNCSSSYWPLSSSICF*NVCFSDSACS 434
SS + + + SA+ S S+PS ++ P + SSS P SSS+ + SDS+ S
Sbjct: 190 SSSSAIPSSSASSSSSVPSSSSAPSPSGSSSSAPSSSSVASPSSSSSDSSSS 241