NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913762
Clone id YMU001_000035_A02
Library
Length 346
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTACAAAGCACAACTTATTCTTTAAAATGTGAAGCTAAACACTTGTGCAAGAACTGCACA
CCTTCGTAAAGCCTACATTCACCAGCATACTTCACAAACATTTCACTCATGAATCAAAAC
AGCTATCAATCCAAGACTATTGGAATGAACACTCAAAAAACTCTCCAAGGACCTCATTAC
ATTACTTGCAAGCATCTAGCAAGAGTGTCGGAAGGAACATGATGCTCTACTCATTCAATT
CAAAGAATTAAAAACTTACAGATTAGTAATCGATGTATTGCCCTTTCCACTGCTGATGAT
ATAATCAGAAAGGGCTTGGTTGTAAGGGCGCGTGTCAACAATCTCA
■■Homology search results ■■ -
sp_hit_id P17847
Definition sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic (Fragment) OS=Zea mays
Align length 29
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913762|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A02.
         (346 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic...    40   0.003
sp|P05314|NIR_SPIOL Ferredoxin--nitrite reductase, chloroplastic...    38   0.014
sp|Q42997|NIR_ORYSJ Ferredoxin--nitrite reductase, chloroplastic...    38   0.018
sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplastic...    37   0.023
sp|Q39161|NIR_ARATH Ferredoxin--nitrite reductase, chloroplastic...    37   0.023
sp|P39661|NIR_SYNE7 Ferredoxin--nitrite reductase OS=Synechococc...    32   0.98 
sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis GN=def ...    30   3.7  
sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis G...    30   3.7  
sp|Q51879|NIR_PHOLA Ferredoxin--nitrite reductase OS=Phormidium ...    29   6.3  
sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase MA...    29   8.3  

>sp|P17847|NIR_MAIZE Ferredoxin--nitrite reductase, chloroplastic
           (Fragment) OS=Zea mays GN=NIR PE=2 SV=1
          Length = 569

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS Y+ ++ +GN +ITNL
Sbjct: 198 EIVDTRPYTNLLSSYVTNNSQGNPTITNL 226


>sp|P05314|NIR_SPIOL Ferredoxin--nitrite reductase, chloroplastic
           OS=Spinacia oleracea GN=NIR PE=1 SV=1
          Length = 594

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRP+   +S ++ ++ +GN SITNL
Sbjct: 225 EIVDTRPFTNLISQFVTANSRGNLSITNL 253


>sp|Q42997|NIR_ORYSJ Ferredoxin--nitrite reductase, chloroplastic
           OS=Oryza sativa subsp. japonica GN=Os01g0357100 PE=2
           SV=1
          Length = 596

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTR Y   LS YI S+ +GN +ITNL
Sbjct: 227 EIVDTRSYTNLLSSYITSNFQGNPTITNL 255


>sp|P38500|NIR_BETVE Ferredoxin--nitrite reductase, chloroplastic
           OS=Betula verrucosa GN=NIR1 PE=2 SV=1
          Length = 583

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIV TRPYN  LS +I ++ +GN + TNL
Sbjct: 213 EIVATRPYNNLLSQFITANSRGNLAFTNL 241


>sp|Q39161|NIR_ARATH Ferredoxin--nitrite reductase, chloroplastic
           OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1
          Length = 586

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS +I ++ +GN   TNL
Sbjct: 216 EIVDTRPYTNLLSQFITANSQGNPDFTNL 244


>sp|P39661|NIR_SYNE7 Ferredoxin--nitrite reductase OS=Synechococcus
           elongatus (strain PCC 7942) GN=nirA PE=3 SV=1
          Length = 512

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           E+ DTR   QAL D + ++G+GN+  TNL
Sbjct: 152 ELFDTRSLIQALQDDLTAAGQGNSEFTNL 180


>sp|P63914|DEF_BRUSU Peptide deformylase OS=Brucella suis GN=def
           PE=3 SV=1
          Length = 175

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 57  HTFVKPTFTSILHKHFTHESKQLSIQDYWNEHSKNSPRTSLHYLQASSK 203
           H FV PT      K  T+E   LSI DY+ E  + +    ++Y  A  K
Sbjct: 73  HIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPA-TVKVNYFDADGK 120


>sp|P63913|DEF_BRUME Peptide deformylase OS=Brucella melitensis
           GN=def PE=3 SV=1
          Length = 175

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 57  HTFVKPTFTSILHKHFTHESKQLSIQDYWNEHSKNSPRTSLHYLQASSK 203
           H FV PT      K  T+E   LSI DY+ E  + +    ++Y  A  K
Sbjct: 73  HIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPA-TVKVNYFDADGK 120


>sp|Q51879|NIR_PHOLA Ferredoxin--nitrite reductase OS=Phormidium
           laminosum GN=nirA PE=3 SV=1
          Length = 510

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           E++DTR   + + D I ++G+GN S +NL
Sbjct: 152 ELIDTRGLVRKVQDMITNNGEGNPSFSNL 180


>sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase
           MARK-A OS=Dictyostelium discoideum GN=mrkA PE=3 SV=1
          Length = 1060

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 93  HKHFTHESKQLSIQDYWNEHSKNSPRTSLHYLQASSKSVGRNMMLYSFNSKN 248
           H H T +  Q   Q  +N ++ N P T       +S +V  ++ + + N+ N
Sbjct: 615 HHHHTQQQNQQQSQQQYNNNNHNKPPTPTIVTTQASTTVNNHISINNNNNNN 666
tr_hit_id Q8LSZ5
Definition tr|Q8LSZ5|Q8LSZ5_PHYPA Ferredoxin-nitrite reductase (Nitrite reductase) OS=Physcomitrella patens
Align length 29
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913762|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A02.
         (346 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8LSZ5|Q8LSZ5_PHYPA Ferredoxin-nitrite reductase (Nitrite red...    45   0.001
tr|A9TB73|A9TB73_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A3Z3Q2|A3Z3Q2_9SYNE Ferredoxin--nitrite reductase OS=Synechoc...    42   0.015
tr|Q4LEX0|Q4LEX0_PHYPA Ferredoxin-nitrite reductase (Nitrite red...    42   0.015
tr|A9TEK7|A9TEK7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A4S3H8|A4S3H8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    42   0.020
tr|B8YNY7|B8YNY7_WHEAT Ferredoxin-nitrite reductase OS=Triticum ...    41   0.034
tr|B8YEL1|B8YEL1_WHEAT Ferredoxin-nitrite reductase OS=Triticum ...    41   0.034
tr|B6SY01|B6SY01_MAIZE Ferredoxin--nitrite reductase OS=Zea mays...    40   0.044
tr|A7P9K2|A7P9K2_VITVI Chromosome chr3 scaffold_8, whole genome ...    40   0.044
tr|Q010I2|Q010I2_OSTTA Nii, plastid-targeted nitrite reductase a...    40   0.058
tr|Q3LG52|Q3LG52_PHYAL Nitrite reductase (Fragment) OS=Physalis ...    40   0.075
tr|Q93XS0|Q93XS0_PRUPE Nitrite reductase (Fragment) OS=Prunus pe...    39   0.099
tr|Q76KA9|Q76KA9_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    39   0.099
tr|Q76G13|Q76G13_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    39   0.099
tr|Q42956|Q42956_TOBAC Ferredoxin--nitrite reductase (Fragment) ...    39   0.099
tr|Q3LG50|Q3LG50_SOLLC Nitrite reductase (Fragment) OS=Solanum l...    39   0.099
tr|O04840|O04840_SOYBN Nitrite reductase OS=Glycine max PE=4 SV=1      39   0.099
tr|A7Y7M0|A7Y7M0_PRUDU Putative nitrite reductase (Fragment) OS=...    39   0.099
tr|Q41099|Q41099_PHAVU Nitrite reductase OS=Phaseolus vulgaris G...    38   0.29 
tr|Q0JMV6|Q0JMV6_ORYSJ Os01g0357100 protein OS=Oryza sativa subs...    38   0.29 
tr|B8A7W8|B8A7W8_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A9PGV2|A9PGV2_POPTR Putative uncharacterized protein OS=Popul...    38   0.29 
tr|A2ZT06|A2ZT06_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q9FY16|Q9FY16_LOTJA Ferredoxin-nitrite reductase OS=Lotus jap...    37   0.37 
tr|Q76KB0|Q76KB0_TOBAC Nitrite reductase OS=Nicotiana tabacum GN...    37   0.37 
tr|Q42957|Q42957_TOBAC Ferredoxin--nitrite reductase (Fragment) ...    37   0.37 
tr|Q3LG51|Q3LG51_SOLLC Nitrite reductase (Fragment) OS=Solanum l...    37   0.37 
tr|Q33DM5|Q33DM5_CAPAN Nitrite reductase (Fragment) OS=Capsicum ...    37   0.37 
tr|Q7V3U9|Q7V3U9_PROMM Ferredoxin--nitrite reductase OS=Prochlor...    37   0.64 

>tr|Q8LSZ5|Q8LSZ5_PHYPA Ferredoxin-nitrite reductase (Nitrite
           reductase) OS=Physcomitrella patens GN=Nii1 PE=2 SV=1
          Length = 602

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDT P  QAL+DYII+ GKGNT ITNL
Sbjct: 240 EIVDTIPICQALNDYIINRGKGNTEITNL 268


>tr|A9TB73|A9TB73_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193361 PE=4 SV=1
          Length = 602

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDT P  QAL+DYII+ GKGNT ITNL
Sbjct: 240 EIVDTIPICQALNDYIINRGKGNTEITNL 268


>tr|A3Z3Q2|A3Z3Q2_9SYNE Ferredoxin--nitrite reductase
           OS=Synechococcus sp. RS9917 GN=RS9917_06020 PE=4 SV=1
          Length = 513

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 17/29 (58%), Positives = 25/29 (86%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY QAL+D++ S+ +GN++ +NL
Sbjct: 157 EIVDTRPYTQALNDFLTSNAEGNSNYSNL 185


>tr|Q4LEX0|Q4LEX0_PHYPA Ferredoxin-nitrite reductase (Nitrite
           reductase) OS=Physcomitrella patens GN=Nii1;2 PE=2 SV=1
          Length = 602

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDT P+ + LSDYII+ G+GN  ITNL
Sbjct: 240 EIVDTAPFCKVLSDYIINRGQGNPQITNL 268


>tr|A9TEK7|A9TEK7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_144369 PE=4 SV=1
          Length = 602

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDT P+ + LSDYII+ G+GN  ITNL
Sbjct: 240 EIVDTAPFCKVLSDYIINRGQGNPQITNL 268


>tr|A4S3H8|A4S3H8_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_50765 PE=4 SV=1
          Length = 633

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY  A+ DY+   G+GN +I NL
Sbjct: 271 EIVDTRPYTLAIQDYVTGGGRGNPAIANL 299


>tr|B8YNY7|B8YNY7_WHEAT Ferredoxin-nitrite reductase OS=Triticum
           aestivum GN=nir PE=4 SV=1
          Length = 597

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS YI ++ +GN +ITNL
Sbjct: 228 EIVDTRPYTNLLSSYITNNSEGNLAITNL 256


>tr|B8YEL1|B8YEL1_WHEAT Ferredoxin-nitrite reductase OS=Triticum
           aestivum GN=nir PE=2 SV=1
          Length = 597

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS YI ++ +GN +ITNL
Sbjct: 228 EIVDTRPYTNLLSSYITNNSEGNLAITNL 256


>tr|B6SY01|B6SY01_MAIZE Ferredoxin--nitrite reductase OS=Zea mays
           PE=2 SV=1
          Length = 597

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS Y+ ++ +GN +ITNL
Sbjct: 226 EIVDTRPYTNLLSSYVTNNSQGNPTITNL 254


>tr|A7P9K2|A7P9K2_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036600001
           PE=4 SV=1
          Length = 595

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -2

Query: 345 EIVDTRPYNQALSDYIISSGKGNTSITNL 259
           EIVDTRPY   LS +I ++ +GNT+ TNL
Sbjct: 224 EIVDTRPYTNLLSQFITANARGNTAFTNL 252