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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913766
Clone id YMU001_000035_A07
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACATGATGAAGGCTTGGGAAAGCTTGCAGTTCGAACCCTGAGAAGAGGCATGCAAGTCT
ATGTGGAAGGAGAGCTGGAGACCAGAGTTTTCAATGATACAGAAACAGGGAGTGTTAAGC
GTGACCGAGAAGTTGCTGTCCATGCAACAGGGCAAGTCATGGCCTGGACTGAAAAAGGCC
CGGTATCACTCGAATATTGTTAGTTAGGGTGTACTATGAGAACTTGTCGATGGTGCCTTC
AAAATAGGACATCCAGGGTGCAATTAAGTATGTTGCAAAAATGAGCAAAAAGAAGACTAC
ATTTTATGACCATCTTTCCTTCCATTGGCCAAGGACCACAGTACAAAAGAAGAGATGACT
GTATGAAGGCTATGTTTGATGTGTTAACTAGCAAGACACTTTGAAGCCATGAGAAACATA
TTCAAAACTATCATGACTCATGAGTCATTGCCAATTCATGTTTAGCTGTGGTAGTGATTA
TTCTGTAATTAGTGTTGATTCCTTGTTTCCATGTCTGCAAGGGTTCAATGCCAATTT
■■Homology search results ■■ -
sp_hit_id Q84J78
Definition sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana
Align length 52
Score (bit) 50.1
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913766|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A07.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitoch...    50   7e-06
sp|Q98M41|SSB_RHILO Single-stranded DNA-binding protein OS=Rhizo...    43   8e-04
sp|Q9ZAQ8|SSB_RHOS4 Single-stranded DNA-binding protein OS=Rhodo...    39   0.021
sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibri...    38   0.035
sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Prote...    38   0.035
sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2 OS=Sa...    38   0.035
sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Ch...    37   0.046
sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibri...    37   0.060
sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein OS=Salmo...    37   0.060
sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein OS=Salmo...    37   0.060
sp|Q89L50|SSB_BRAJA Single-stranded DNA-binding protein OS=Brady...    37   0.060
sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibri...    37   0.079
sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shige...    37   0.079
sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Esche...    37   0.079
sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Esche...    37   0.079
sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Esche...    37   0.079
sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Sa...    37   0.079
sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersi...    36   0.10 
sp|Q8EA81|SSB_SHEON Single-stranded DNA-binding protein OS=Shewa...    36   0.10 
sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serra...    36   0.13 
sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Bruce...    36   0.13 
sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Bruce...    36   0.13 
sp|P66846|SSB_BORPE Single-stranded DNA-binding protein OS=Borde...    36   0.13 
sp|P59928|SSB_BORPA Single-stranded DNA-binding protein OS=Borde...    36   0.13 
sp|P66847|SSB_BORBR Single-stranded DNA-binding protein OS=Borde...    36   0.13 
sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding...    36   0.13 
sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding...    36   0.13 
sp|P18310|SSBF_ECOLI Plasmid-derived single-stranded DNA-binding...    36   0.13 
sp|P56898|SSB_RHIME Single-stranded DNA-binding protein OS=Rhizo...    35   0.18 
sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding...    35   0.18 

>sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein,
           mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2
           SV=1
          Length = 201

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQV 158
           H+E LG  AV+ L +   VYVEG++ETRV+ND+ +  VK   E+ V   G++
Sbjct: 128 HNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKI 179


>sp|Q98M41|SSB_RHILO Single-stranded DNA-binding protein
           OS=Rhizobium loti GN=ssb PE=3 SV=1
          Length = 172

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 21/45 (46%), Positives = 34/45 (75%)
 Frame = +3

Query: 6   DEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAV 140
           +EG+ K+A + L++GM+VYVEG+L+TR + D +TG+ K   EV +
Sbjct: 61  NEGIAKVAEQYLKKGMKVYVEGQLQTRKWQD-QTGADKYTTEVVL 104


>sp|Q9ZAQ8|SSB_RHOS4 Single-stranded DNA-binding protein
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=ssb PE=3 SV=2
          Length = 173

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +3

Query: 6   DEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAV 140
           DE L ++A + LR+G  VY+EG+LETR + D ++G  +   EV +
Sbjct: 61  DENLARVAEQYLRKGSTVYIEGQLETRKWQD-QSGQDRYSTEVVL 104


>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio
           parahaemolyticus GN=ssb PE=3 SV=1
          Length = 176

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           L ++A   LR+G QVYVEG+L+TR + D ++G  +   EV V     VM
Sbjct: 64  LAEVAGEYLRKGSQVYVEGQLQTRKWQD-QSGQDRYSTEVVVQGFNGVM 111


>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus
           mirabilis GN=ssb PE=1 SV=2
          Length = 174

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 20/55 (36%), Positives = 33/55 (60%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVMAWTEKG 179
           L ++A   LR+G QVY+EG+L+TR + D ++G  +   EV V+  G +     +G
Sbjct: 64  LAEIAGEYLRKGSQVYIEGQLQTRKWQD-QSGQDRYSTEVVVNIGGTMQMLGGRG 117


>sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2
           OS=Salmonella typhimurium GN=ssb2 PE=3 SV=1
          Length = 172

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATG 152
           L ++A   LR+G QVY+EG+L TR + D ++G  K   EV V+  G
Sbjct: 64  LAEIASEYLRKGAQVYIEGQLRTRKWTD-QSGQDKYTTEVIVNVGG 108


>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1
           OS=Chlorobium tepidum GN=ssb1 PE=3 SV=1
          Length = 162

 Score = 37.4 bits (85), Expect = 0.046
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 18  GKLA---VRTLRRGMQVYVEGELETRVFNDTETGSVKRDREV 134
           GKLA    + L++G QVY+EG L+TR ++D +TG  K   E+
Sbjct: 60  GKLADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEI 101


>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio
           cholerae GN=ssb PE=3 SV=1
          Length = 177

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           L ++A   LR+G QVY+EG+L+TR + D ++G  +   EV V     +M
Sbjct: 64  LAEVAGEYLRKGSQVYIEGQLQTRKWQD-QSGQDRYSTEVVVQGYNGIM 111


>sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein
           OS=Salmonella typhimurium GN=ssb PE=3 SV=2
          Length = 176

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           L ++A   LR+G QVY+EG+L TR + D ++G  +   E+ V   G VM
Sbjct: 64  LAEVAGEYLRKGSQVYIEGQLRTRKWTD-QSGQERYTTEINVPQIGGVM 111


>sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein
           OS=Salmonella typhi GN=ssb PE=3 SV=2
          Length = 176

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +3

Query: 15  LGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           L ++A   LR+G QVY+EG+L TR + D ++G  +   E+ V   G VM
Sbjct: 64  LAEVAGEYLRKGSQVYIEGQLRTRKWTD-QSGQERYTTEINVPQIGGVM 111
tr_hit_id A9TAN1
Definition tr|A9TAN1|A9TAN1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 59.3
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913766|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A07.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TAN1|A9TAN1_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   1e-07
tr|A9SBZ1|A9SBZ1_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   2e-07
tr|A9RL19|A9RL19_PHYPA Predicted protein (Fragment) OS=Physcomit...    57   5e-07
tr|Q5VP75|Q5VP75_ORYSJ cDNA clone:001-122-B08, full insert seque...    53   9e-06
tr|A9NW20|A9NW20_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A2WT49|A2WT49_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|A9NS43|A9NS43_PICSI Putative uncharacterized protein OS=Picea...    52   2e-05
tr|Q2HW28|Q2HW28_MEDTR Single-stranded DNA binding OS=Medicago t...    51   3e-05
tr|Q546B8|Q546B8_ARATH Single-stranded DNA binding protein OS=Ar...    50   7e-05
tr|Q9LII1|Q9LII1_ARATH Similarity to unknown protein OS=Arabidop...    49   2e-04
tr|B6U5B2|B6U5B2_MAIZE Single-stranded DNA-binding protein OS=Ze...    49   2e-04
tr|B4FRF4|B4FRF4_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|A7PRW7|A7PRW7_VITVI Chromosome chr14 scaffold_27, whole genom...    49   2e-04
tr|A7QXV4|A7QXV4_VITVI Chromosome chr2 scaffold_233, whole genom...    49   2e-04
tr|Q6L4W0|Q6L4W0_ORYSJ Os05g0509700 protein OS=Oryza sativa subs...    47   8e-04
tr|Q0JDX1|Q0JDX1_ORYSJ Os04g0363700 protein (Fragment) OS=Oryza ...    47   8e-04
tr|B8AZT8|B8AZT8_ORYSI Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|A3B5Q5|A3B5Q5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|A5AYF6|A5AYF6_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q1GII7|Q1GII7_SILST Single-stranded DNA-binding protein OS=Si...    43   0.012
tr|Q1GG07|Q1GG07_SILST Single-stranded DNA-binding protein OS=Si...    43   0.012
tr|Q1N941|Q1N941_9SPHN Single-stranded DNA-binding protein OS=Sp...    42   0.015
tr|A3ASU1|A3ASU1_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.026
tr|Q31IV0|Q31IV0_THICR Single-stranded DNA-binding protein OS=Th...    41   0.045
tr|B6QY51|B6QY51_9RHOB Single-strand DNA-binding protein OS=Pseu...    40   0.059
tr|Q1GGQ8|Q1GGQ8_SILST Single-stranded DNA-binding protein OS=Si...    40   0.076
tr|B6ISP2|B6ISP2_RHOCS Single-strand DNA binding protein, putati...    40   0.076
tr|B3X7U9|B3X7U9_ECOLX Single-strand binding protein OS=Escheric...    40   0.076
tr|A3XAJ4|A3XAJ4_9RHOB Single-stranded DNA-binding protein OS=Ro...    40   0.076
tr|Q2IWJ5|Q2IWJ5_RHOP2 Single-stranded DNA-binding protein OS=Rh...    40   0.100

>tr|A9TAN1|A9TAN1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_142694 PE=4 SV=1
          Length = 133

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 26/53 (49%), Positives = 39/53 (73%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + E +G+L +R++++G QVYVEG +ETR++ND  T  VKR RE+AV   G +M
Sbjct: 61  YQERIGQLILRSMKQGSQVYVEGNIETRIYNDPNTQQVKRIREIAVRQNGILM 113


>tr|A9SBZ1|A9SBZ1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_127230 PE=4 SV=1
          Length = 118

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 26/55 (47%), Positives = 38/55 (69%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVMAW 167
           + E +G L +R++++G QVYVEG +ETR++ND  T  VKR RE+AV   G  M +
Sbjct: 61  YQEHIGHLILRSMKQGSQVYVEGNIETRIYNDPNTQKVKRIREIAVRQNGTSMLY 115


>tr|A9RL19|A9RL19_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_116068 PE=4 SV=1
          Length = 126

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 26/53 (49%), Positives = 38/53 (71%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + E +G L +R++++G QVYVEG +ETRV+ D  T  VKR RE+AV   G+V+
Sbjct: 62  YQEKVGNLILRSMKQGAQVYVEGNMETRVYTDPVTQQVKRIREIAVRQNGRVL 114


>tr|Q5VP75|Q5VP75_ORYSJ cDNA clone:001-122-B08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0510C12.21 PE=2 SV=1
          Length = 224

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 24/53 (45%), Positives = 39/53 (73%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + E LG LA++ ++ G  +Y+EG LET+VF+D  TG V+R RE+AV + G+++
Sbjct: 152 YPERLGSLALKHVKTGSVLYLEGNLETKVFSDPITGLVRRIREIAVRSNGRLL 204


>tr|A9NW20|A9NW20_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 223

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 23/51 (45%), Positives = 38/51 (74%)
 Frame = +3

Query: 9   EGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + LG +A++ L++G  VY+EG LET++F+D  TG VKR RE+A+   G+++
Sbjct: 151 DNLGGIAMQHLKQGAHVYLEGNLETKIFSDPITGLVKRVREIAIRRQGRLI 201


>tr|A2WT49|A2WT49_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03039 PE=4 SV=1
          Length = 224

 Score = 53.1 bits (126), Expect = 9e-06
 Identities = 24/53 (45%), Positives = 39/53 (73%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + E LG LA++ ++ G  +Y+EG LET+VF+D  TG V+R RE+AV + G+++
Sbjct: 152 YPERLGSLALKHVKTGSVLYLEGNLETKVFSDPITGLVRRIREIAVRSNGRLL 204


>tr|A9NS43|A9NS43_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 207

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQV-MAWTEKG 179
           H+E LG   V+ L +   VYVEG++ETRV+ND   G+VK   E+ V   G+V +     G
Sbjct: 133 HNEPLGAYVVQQLIKDASVYVEGDIETRVYNDNINGTVKHVPEICVRRDGKVHLINNASG 192

Query: 180 PVS 188
           PVS
Sbjct: 193 PVS 195


>tr|Q2HW28|Q2HW28_MEDTR Single-stranded DNA binding OS=Medicago
           truncatula GN=MtrDRAFT_AC147963g35v2 PE=4 SV=2
          Length = 216

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQV 158
           H+E LG  AV+ L +   VYVEGE+ETRV+ND+  G VK   E+ V   G++
Sbjct: 139 HNEVLGAYAVQQLFKNSSVYVEGEIETRVYNDSINGEVKSIPEICVRRDGKL 190


>tr|Q546B8|Q546B8_ARATH Single-stranded DNA binding protein
           OS=Arabidopsis thaliana GN=ssb PE=2 SV=1
          Length = 201

 Score = 50.1 bits (118), Expect = 7e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQV 158
           H+E LG  AV+ L +   VYVEG++ETRV+ND+ +  VK   E+ V   G++
Sbjct: 128 HNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKI 179


>tr|Q9LII1|Q9LII1_ARATH Similarity to unknown protein OS=Arabidopsis
           thaliana GN=At3g18580 PE=4 SV=1
          Length = 217

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 34/53 (64%)
 Frame = +3

Query: 3   HDEGLGKLAVRTLRRGMQVYVEGELETRVFNDTETGSVKRDREVAVHATGQVM 161
           + E L  L ++ +  G  +Y+EG LET++F D  TG V+R REVA+   G+V+
Sbjct: 143 YPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVV 195