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NBDC - LSDB Archive
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BP913771
Clone id YMU001_000035_A12
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCAGGTACTCTTTACTTTCAATCTTCATATATGTCATTGTCTTCTTGAAATCTATAAATA
TCTTTACCGGATTACTGAGTCCCTCTTAGGAGCTTCTCCAATGCAGTCTTGTTGGTGCTT
TGTCATAGTCTACTTTAAGCTTTGCCATGGCTTCAACTCATGTTGATGAGAGTGCAGCCA
GTGGATCTTCCAAACTCCTAAACTCTCTGTTTGTAGAATGCCAATTCCTCAATTACCAAA
TTTAGTGCAACTTTCATCATCTCACCTTGTTGTTGGGCTGTGGTCAATTCCGCCTTTGCT
GCTACTTTGCAGCCTCCTCCTTCCCTTTGACTGCATCTTCTAGGCTGTGAATCCAAGCTT
GTATTGTCTCCCTTTCTAGCTCATATGTCTGGTTCAAGTGTTTACTTTGCTCTAACTGTT
GCTTGAGAGCTTGCATTTCTTCTGTACATGATCCTCCAAATCATATTTACATCTCTGTAG
GTGCTCTCCAAGATCGCTTGGGCTTGGGCCACTTTAACAATTACCTTTGGATCCACATGC
ATTTCCTTTAGGAGCCATTTCCGAGAGATGCCTTTTGAACATTTCCTCTTCTTCAAGAGG
AT
■■Homology search results ■■ -
sp_hit_id P35749
Definition sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens
Align length 38
Score (bit) 30.4
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913771|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A12.
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3     30   7.2  
sp|Q55CV7|TSPC_DICDI Probable tetraspanin tspC OS=Dictyostelium ...    30   9.4  
sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH1...    30   9.4  
sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1     30   9.4  
sp|A6QQQ9|K1C20_BOVIN Keratin, type I cytoskeletal 20 OS=Bos tau...    30   9.4  
sp|Q83MG9|CAIC_SHIFL Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|Q0T8F7|CAIC_SHIF8 Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|Q1RGG1|CAIC_ECOUT Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|Q8FLA5|CAIC_ECOL6 Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|Q0TLV2|CAIC_ECOL5 Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|A1A787|CAIC_ECOK1 Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  
sp|Q8XA34|CAIC_ECO57 Probable crotonobetaine/carnitine-CoA ligas...    30   9.4  

>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3
          Length = 1972

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 442  EEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAV 329
            ++M  L++QLE+ +   Q  +LE+ T +A I  LED +
Sbjct: 950  QQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEI 987


>sp|Q55CV7|TSPC_DICDI Probable tetraspanin tspC OS=Dictyostelium
           discoideum GN=tspC PE=3 SV=2
          Length = 238

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 484 LSKIAWAWATLTITFGSTCISFRSHFREMPFE 579
           L+ I W    + I  GS CISF S+F+E   E
Sbjct: 22  LNAILWLLGLVLIVVGSVCISFFSNFKEFTKE 53


>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11
            PE=2 SV=2
          Length = 1972

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 442  EEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAV 329
            ++M  L++QLE+ +   Q  +LE+ T +A I  LED +
Sbjct: 950  QQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDI 987


>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1
          Length = 1972

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 442  EEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAV 329
            ++M  L++QLE+ +   Q  +LE+ T +A I  LED +
Sbjct: 950  QQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDI 987


>sp|A6QQQ9|K1C20_BOVIN Keratin, type I cytoskeletal 20 OS=Bos taurus
           GN=KRT20 PE=2 SV=2
          Length = 422

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -2

Query: 445 TEEMQALKQQLEQSKHLNQTYELERETI----QAWIHSLED 335
           TEE++  K Q+++ +H  Q  ELE +++    +A  H+LE+
Sbjct: 276 TEELKGTKDQIKEQRHTYQVLELELQSLLNMKEALEHTLEE 316


>sp|Q83MG9|CAIC_SHIFL Probable crotonobetaine/carnitine-CoA ligase
           OS=Shigella flexneri GN=caiC PE=3 SV=2
          Length = 517

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 581 CSKGISRKWLLKEMHVDPKVIVKVAQAQAIL---ESTYRDVNMIWRIMYRR 438
           C KG+  K + KE  ++PK   KV +A   L   ++ YRD    +  + RR
Sbjct: 370 CIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRR 420


>sp|Q0T8F7|CAIC_SHIF8 Probable crotonobetaine/carnitine-CoA ligase
           OS=Shigella flexneri serotype 5b (strain 8401) GN=caiC
           PE=3 SV=3
          Length = 510

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 581 CSKGISRKWLLKEMHVDPKVIVKVAQAQAIL---ESTYRDVNMIWRIMYRR 438
           C KG+  K + KE  ++PK   KV +A   L   ++ YRD    +  + RR
Sbjct: 370 CIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRR 420


>sp|Q1RGG1|CAIC_ECOUT Probable crotonobetaine/carnitine-CoA ligase
           OS=Escherichia coli (strain UTI89 / UPEC) GN=caiC PE=3
           SV=2
          Length = 517

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 581 CSKGISRKWLLKEMHVDPKVIVKVAQAQAIL---ESTYRDVNMIWRIMYRR 438
           C KG+  K + KE  ++PK   KV +A   L   ++ YRD    +  + RR
Sbjct: 370 CIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRR 420


>sp|Q8FLA5|CAIC_ECOL6 Probable crotonobetaine/carnitine-CoA ligase
           OS=Escherichia coli O6 GN=caiC PE=3 SV=2
          Length = 517

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 581 CSKGISRKWLLKEMHVDPKVIVKVAQAQAIL---ESTYRDVNMIWRIMYRR 438
           C KG+  K + KE  ++PK   KV +A   L   ++ YRD    +  + RR
Sbjct: 370 CIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRR 420


>sp|Q0TLV2|CAIC_ECOL5 Probable crotonobetaine/carnitine-CoA ligase
           OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
           GN=caiC PE=3 SV=2
          Length = 517

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 581 CSKGISRKWLLKEMHVDPKVIVKVAQAQAIL---ESTYRDVNMIWRIMYRR 438
           C KG+  K + KE  ++PK   KV +A   L   ++ YRD    +  + RR
Sbjct: 370 CIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRR 420
tr_hit_id A6VJQ2
Definition tr|A6VJQ2|A6VJQ2_METM7 Phosphoglycerate mutase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Align length 43
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913771|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_A12.
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6VJQ2|A6VJQ2_METM7 Phosphoglycerate mutase OS=Methanococcus ...    35   2.6  
tr|A8XMZ0|A8XMZ0_CAEBR Putative uncharacterized protein OS=Caeno...    35   3.4  
tr|B5JJR3|B5JJR3_9BACT Glycosyl transferase, group 2 family prot...    34   7.5  
tr|A9TR88|A9TR88_PHYPA Predicted protein OS=Physcomitrella paten...    34   7.5  
tr|B8F4W0|B8F4W0_HAEPR Cell division protein FtsB OS=Haemophilus...    33   9.8  

>tr|A6VJQ2|A6VJQ2_METM7 Phosphoglycerate mutase OS=Methanococcus
           maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_1620
           PE=4 SV=1
          Length = 428

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 573 RHLSEMAPKGNACGSKGNC*SGPSPSD-LGEHLQRCKYDLEDH 448
           RH++++ P    CGS G C    + SD L E L RC   LE+H
Sbjct: 173 RHVNKVLPVYELCGSSGECKRAKNTSDALNEFLLRCNKILENH 215


>tr|A8XMZ0|A8XMZ0_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG15811 PE=4 SV=2
          Length = 3870

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 12/48 (25%), Positives = 32/48 (66%)
 Frame = -2

Query: 451 SCTEEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAVKGKEEAA 308
           SC ++++A K+++ + + L+  +E  + ++ AWI +L+D +K  ++ +
Sbjct: 579 SCAQDLEARKEKMAELESLDADFESAKGSLVAWISALDDQLKALDKVS 626


>tr|B5JJR3|B5JJR3_9BACT Glycosyl transferase, group 2 family protein
           OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_1809
           PE=4 SV=1
          Length = 1027

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 442 EEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAVKGKEEAAK 305
           +E+  LK +LEQ + +N++   E E+++   H +E  +K KEE  +
Sbjct: 364 QEIHLLKSELEQKESVNKSISEELESLKEKSHHIEQILKEKEEKVR 409


>tr|A9TR88|A9TR88_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_171502 PE=4 SV=1
          Length = 2302

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -2

Query: 442  EEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAVKGKEEAAK 305
            EE    +++LE+ K + Q  + E E   AW+ S E   K KEEAAK
Sbjct: 1896 EEEIKRQKRLEKEKEVEQRRKKEEERELAWLESKEATRKRKEEAAK 1941


>tr|B8F4W0|B8F4W0_HAEPR Cell division protein FtsB OS=Haemophilus
           parasuis SH0165 GN=ftsB PE=4 SV=1
          Length = 93

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 460 FGGSCTEEMQALKQQLEQSKHLNQTYELERETIQAWIHSLEDAVKGKEEAAK 305
           FG +   E Q  KQ++ Q K  NQ      + IQA I  L+  +   EE A+
Sbjct: 21  FGQNGWNEYQQAKQEVSQLKETNQKLTARNQLIQAEIEDLKTGINALEERAR 72