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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913773
Clone id YMU001_000035_B02
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTTGTGAACCAAAATGACCTAGAATGCCATACATAACCTGTCACACTGTTGTGAGTC
TCTGTACGATGGTGTTTACAGACCACAGGGAGAAAAAGGGGCAATTCTCAAAAGTATTCA
TATTTCCGCGAAAACAGTAATACCAGGCCTTGATAACCTCTGTGACAAAGTAGAGATTAT
AGTGCTTCTTCATGATTGAAGTCTTCAAAACTAAAGGGGTGTGGTGTCGGGAGTATTGAG
CGTGACAATCAACGCTTGAGAAACTAGTTATTAATGCAGGACACATCACCATGAATTCGT
CTTGCCACATCTTCCTTTACTAGGGCACCCTTCGAAGCCCCATCTGAACAAGTAAACTTG
TAGCTAAAAACTCTAAAGAAGAATGCTCACCATCCTTCAAGAAAAGCATAAGATCGTTCT
TGCAACCTTTTTGGTAAGTTCTTTATTGCTGCTTGAATTTCCTCAAATGTGTGACGCGCT
GAGAAATGTATGAAGAGAATGCC
■■Homology search results ■■ -
sp_hit_id Q8LGU7
Definition sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana
Align length 37
Score (bit) 39.3
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913773|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B02.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thali...    39   0.010
sp|Q66KD0|BTBDH_XENTR BTB/POZ domain-containing protein 17 OS=Xe...    32   2.2  
sp|Q4H1B9|MATK_ARIGL Maturase K OS=Aristea glauca GN=matK PE=3 SV=1    31   3.7  
sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit...    30   4.9  
sp|P30002|TEGU_HHV6G Large tegument protein OS=Human herpesvirus...    30   8.3  

>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana
           GN=NUZ PE=2 SV=3
          Length = 280

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T +EI+ A+  LP  L+ R +A  +G+
Sbjct: 244 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280


>sp|Q66KD0|BTBDH_XENTR BTB/POZ domain-containing protein 17
           OS=Xenopus tropicalis GN=btbd17 PE=2 SV=1
          Length = 468

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -2

Query: 256 SVDCHAQYSRHHTPLVLK--TSIMKKHYNLYFVTEVIKAWY-YCFR-GNMNTFENCPFFS 89
           ++  H   +++H   + +  T  MK H++       + +WY Y  R G++N  E+C  F 
Sbjct: 123 AIPLHRLANKYHMTALQRGVTEYMKTHFSSESAQGHVVSWYHYALRMGDINLQESCLKFL 182

Query: 88  LWSVNTIV 65
            W+++TI+
Sbjct: 183 AWNLSTIM 190


>sp|Q4H1B9|MATK_ARIGL Maturase K OS=Aristea glauca GN=matK PE=3 SV=1
          Length = 522

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 181 YNLYFVTEVIKAWYYCFRGNMNTFENCPFFSLWSVNTIVQRLTTV 47
           YN +F       WY  +R ++N   NC F+ L  +++++++ +TV
Sbjct: 323 YNFHF-------WYQSYRIHINQLSNCSFYFLGYLSSLLKKSSTV 360


>sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit
           gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2
          Length = 452

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 214 LVLKTSIMKKHYNLYFVTEVIKAWYYCFR 128
           LV+K SI++KH  ++F T ++ A  YC +
Sbjct: 180 LVIKGSILQKHPRIHFQTGLVDAHLYCLK 208


>sp|P30002|TEGU_HHV6G Large tegument protein OS=Human herpesvirus 6A
            (strain GS) GN=U31 PE=3 SV=1
          Length = 2077

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 418  NDLMLFLKDGEHSSLEFLATSLL 350
            ND++L LKDG+ SSLE +  +LL
Sbjct: 983  NDILLILKDGQFSSLETMHLNLL 1005
tr_hit_id B6U9N4
Definition tr|B6U9N4|B6U9N4_MAIZE Nuclear ribonuclease Z OS=Zea mays
Align length 37
Score (bit) 44.7
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913773|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B02.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6U9N4|B6U9N4_MAIZE Nuclear ribonuclease Z OS=Zea mays PE=2 SV=1    45   0.003
tr|B4FNQ3|B4FNQ3_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.003
tr|A9RMD5|A9RMD5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.013
tr|Q6H8B1|Q6H8B1_ORYSJ Os02g0214300 protein OS=Oryza sativa subs...    41   0.037
tr|A3A4I3|A3A4I3_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.037
tr|A2X2E2|A2X2E2_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.037
tr|A9U3L1|A9U3L1_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.048
tr|A7QI56|A7QI56_VITVI Chromosome chr17 scaffold_101, whole geno...    40   0.048
tr|A9NSJ9|A9NSJ9_PICSI Putative uncharacterized protein OS=Picea...    40   0.062
tr|Q1WW71|Q1WW71_ARATH At1g74700 OS=Arabidopsis thaliana PE=2 SV=1     39   0.11 
tr|Q00ZD9|Q00ZD9_OSTTA RNase Z (ISS) OS=Ostreococcus tauri GN=Ot...    37   0.69 
tr|A4S4A8|A4S4A8_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   0.90 

>tr|B6U9N4|B6U9N4_MAIZE Nuclear ribonuclease Z OS=Zea mays PE=2 SV=1
          Length = 302

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 22/37 (59%), Positives = 25/37 (67%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T EEI AAI  LP   + R YA  EG+
Sbjct: 266 ILLIHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302


>tr|B4FNQ3|B4FNQ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 302

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 22/37 (59%), Positives = 25/37 (67%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T EEI AAI  LP   + R YA  EG+
Sbjct: 266 ILLIHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302


>tr|A9RMD5|A9RMD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159959 PE=4 SV=1
          Length = 354

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           ILFIHFSAR+  E+I  AI+N+P  LQ R +A  EG+
Sbjct: 318 ILFIHFSARYQQEDICKAIENIPAPLQGRVHALTEGF 354


>tr|Q6H8B1|Q6H8B1_ORYSJ Os02g0214300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1006_D05.15 PE=4 SV=1
          Length = 302

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T EEI  AI  LP   + R +A  EG+
Sbjct: 266 ILLIHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 302


>tr|A3A4I3|A3A4I3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005705 PE=4 SV=1
          Length = 270

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T EEI  AI  LP   + R +A  EG+
Sbjct: 234 ILLIHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 270


>tr|A2X2E2|A2X2E2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06362 PE=4 SV=1
          Length = 302

 Score = 40.8 bits (94), Expect = 0.037
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T EEI  AI  LP   + R +A  EG+
Sbjct: 266 ILLIHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 302


>tr|A9U3L1|A9U3L1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_155555 PE=4 SV=1
          Length = 295

 Score = 40.4 bits (93), Expect = 0.048
 Identities = 21/37 (56%), Positives = 25/37 (67%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           ILFIHFSAR+  EEI  A++ LP  LQ R  A  EG+
Sbjct: 259 ILFIHFSARYKREEILRAVEELPPPLQGRVAALTEGF 295


>tr|A7QI56|A7QI56_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000101001
           PE=4 SV=1
          Length = 290

 Score = 40.4 bits (93), Expect = 0.048
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T +EIQ A+  LP  L  R +A  EG+
Sbjct: 254 ILLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 290


>tr|A9NSJ9|A9NSJ9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 291

 Score = 40.0 bits (92), Expect = 0.062
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+  EEI+AA+  LP+ L  R +   EG+
Sbjct: 255 ILLIHFSARYRIEEIKAAVAKLPQTLFGRVFTLTEGF 291


>tr|Q1WW71|Q1WW71_ARATH At1g74700 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 280

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -1

Query: 500 ILFIHFSARHTFEEIQAAIKNLPKRLQERSYAFLEGW 390
           IL IHFSAR+T +EI+ A+  LP  L+ R +A  +G+
Sbjct: 244 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280