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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913776
Clone id YMU001_000035_B06
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATAAGATCGTTTGAAGACAAGCTAGATGTAAATGTGACATCGCTGTCACAAACATACTCA
GTAACCACCGTACTGATCTCACTAGCATCTGTCATGCCAAAATCTGTATCACGCATCTGT
CGTCTCCGTTGTCTCAAACGCCTGAAACATCGACGCCTAATGTGCCCTCTATGTCCACAA
TGCCAACATGTCAAGTCTCTATGCCGTCGAGACTTGCGTGTGGGACCAATCTCTCCCATG
GACATAGAAGTGGGACTAGACTCCCCTGTAGACATGGATGTCGCGTACATAGCATGTAAA
CTCTGCCATAAAGCATGA
■■Homology search results ■■ -
sp_hit_id O84375
Definition sp|O84375|ARODE_CHLTR Shikimate biosynthesis protein aroDE OS=Chlamydia trachomatis
Align length 94
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913776|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B06.
         (318 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O84375|ARODE_CHLTR Shikimate biosynthesis protein aroDE OS=Ch...    32   0.75 
sp|Q3MBU3|PPNK1_ANAVT Probable inorganic polyphosphate/ATP-NAD k...    31   1.7  
sp|Q5N133|PPNK1_SYNP6 Probable inorganic polyphosphate/ATP-NAD k...    31   2.2  
sp|Q46JK2|PPNK1_PROMT Probable inorganic polyphosphate/ATP-NAD k...    29   6.3  
sp|Q7V8H9|PPNK1_PROMM Probable inorganic polyphosphate/ATP-NAD k...    29   6.3  
sp|Q91ZY8|TRIM9_RAT Tripartite motif-containing protein 9 OS=Rat...    29   8.2  
sp|Q8C7M3|TRIM9_MOUSE Tripartite motif-containing protein 9 OS=M...    29   8.2  
sp|Q9C026|TRIM9_HUMAN Tripartite motif-containing protein 9 OS=H...    29   8.2  
sp|Q29RQ5|TRIM9_BOVIN Tripartite motif-containing protein 9 OS=B...    29   8.2  
sp|P37370|VRP1_YEAST Verprolin OS=Saccharomyces cerevisiae GN=VR...    29   8.3  
sp|Q8YN19|PPNK1_ANASP Probable inorganic polyphosphate/ATP-NAD k...    29   8.3  
sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=M...    29   8.3  
sp|Q5T6C5|AT7L2_HUMAN Ataxin-7-like protein 2 OS=Homo sapiens GN...    29   8.3  

>sp|O84375|ARODE_CHLTR Shikimate biosynthesis protein aroDE
           OS=Chlamydia trachomatis GN=aroE PE=3 SV=1
          Length = 478

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
 Frame = +3

Query: 15  RQARCKCDIAVTNILSNHRTDLTSICHAKI------------CITHLSSPLSQTPETSTP 158
           R +R  C++ + N    H  DL S C AK              I +   P    P+   P
Sbjct: 348 RLSRANCELLIFNRTKAHAEDLASRCQAKAFSLEELPLHRVSLIINCLPPSCTIPKAVAP 407

Query: 159 NVPSMSTMPTCQVSMPSRLACGTNLSHGHRSGTR 260
            V  ++T+P          + G+++ +GH   T+
Sbjct: 408 CVVDINTIPKHSTFTQYARSQGSSIIYGHEMFTQ 441


>sp|Q3MBU3|PPNK1_ANAVT Probable inorganic polyphosphate/ATP-NAD
           kinase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC
           7937) GN=ppnK1 PE=3 SV=2
          Length = 305

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 19/68 (27%)
 Frame = +3

Query: 66  HRTDLTSICHAKICITH------------LSSPLSQTPETS-------TPNVPSMSTMPT 188
           HR  LTS+CH +I +              +S+P   T  +        TP VP++  +P 
Sbjct: 157 HREPLTSMCHFEIAVGRHAPVDIAADGVIVSTPTGSTAYSLSAGGPVVTPGVPALQLVPI 216

Query: 189 CQVSMPSR 212
           C  S+ SR
Sbjct: 217 CPHSLASR 224


>sp|Q5N133|PPNK1_SYNP6 Probable inorganic polyphosphate/ATP-NAD
           kinase 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC
           6301 / SAUG 1402/1) GN=ppnK1 PE=3 SV=1
          Length = 305

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
 Frame = +3

Query: 51  NILSNHRTDLTSICHAKICI------------THLSSP-------LSQTPETSTPNVPSM 173
           N ++ HR  LTS+CH ++ I              +S+P       LS      TP+VP  
Sbjct: 152 NEMALHREPLTSMCHFEVAIGKHVPVDIAADGVIVSTPTGSTAYSLSSGGPVVTPDVPVF 211

Query: 174 STMPTCQVSMPSR 212
             +P C  S+ SR
Sbjct: 212 QLVPICPHSLASR 224


>sp|Q46JK2|PPNK1_PROMT Probable inorganic polyphosphate/ATP-NAD
           kinase 1 OS=Prochlorococcus marinus (strain NATL2A)
           GN=ppnK1 PE=3 SV=1
          Length = 302

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
 Frame = +3

Query: 15  RQARCKCDIAVTNILSNHRTDLTSICHAKICITH------------LSSP-------LSQ 137
           R  +C+ +    N ++ HR  +TS+CH +I +              LS+P       LS 
Sbjct: 140 RGDQCRWEALCLNEMALHREPMTSMCHFEISVGRHAPVDISADGVILSTPTGSTAYSLSA 199

Query: 138 TPETSTPNVPSMSTMPTCQVSMPSRLACGTN 230
                TP+ P +   P    S+ SR    +N
Sbjct: 200 GGPVITPDCPVLQLTPVSPHSLASRALVFSN 230


>sp|Q7V8H9|PPNK1_PROMM Probable inorganic polyphosphate/ATP-NAD
           kinase 1 OS=Prochlorococcus marinus (strain MIT 9313)
           GN=ppnK1 PE=3 SV=1
          Length = 302

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 19/85 (22%)
 Frame = +3

Query: 15  RQARCKCDIAVTNILSNHRTDLTSICHAKICITH------------LSSP-------LSQ 137
           R  +C+ +    N ++ HR  LTS+CH ++ I              LS+P       LS 
Sbjct: 140 RGDQCRWEALSLNEMALHREPLTSMCHFEVAIGRHAPVDISADGVILSTPTGSTAYALSA 199

Query: 138 TPETSTPNVPSMSTMPTCQVSMPSR 212
                TP  P +   P    S+ SR
Sbjct: 200 GGPVITPECPVLQLAPIAPHSLASR 224


>sp|Q91ZY8|TRIM9_RAT Tripartite motif-containing protein 9 OS=Rattus
           norvegicus GN=Trim9 PE=1 SV=1
          Length = 710

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 CPLCPQCQHVKSLCRRDLRVGPISPMDIEVGLDSPVDMDVAYIACKLCHKA 315
           C  CPQC     L  R LR  P + + +E  +D       A + C+LC KA
Sbjct: 125 CITCPQCHRSLILDDRGLRGFPKNRV-LEGVIDRYQQSKAAALKCQLCEKA 174


>sp|Q8C7M3|TRIM9_MOUSE Tripartite motif-containing protein 9 OS=Mus
           musculus GN=Trim9 PE=2 SV=2
          Length = 817

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 CPLCPQCQHVKSLCRRDLRVGPISPMDIEVGLDSPVDMDVAYIACKLCHKA 315
           C  CPQC     L  R LR  P + + +E  +D       A + C+LC KA
Sbjct: 125 CITCPQCHRSLILDDRGLRGFPKNRV-LEGVIDRYQQSKAAALKCQLCEKA 174


>sp|Q9C026|TRIM9_HUMAN Tripartite motif-containing protein 9 OS=Homo
           sapiens GN=TRIM9 PE=1 SV=1
          Length = 710

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 CPLCPQCQHVKSLCRRDLRVGPISPMDIEVGLDSPVDMDVAYIACKLCHKA 315
           C  CPQC     L  R LR  P + + +E  +D       A + C+LC KA
Sbjct: 125 CITCPQCHRSLILDDRGLRGFPKNRV-LEGVIDRYQQSKAAALKCQLCEKA 174


>sp|Q29RQ5|TRIM9_BOVIN Tripartite motif-containing protein 9 OS=Bos
           taurus GN=TRIM9 PE=2 SV=1
          Length = 710

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 CPLCPQCQHVKSLCRRDLRVGPISPMDIEVGLDSPVDMDVAYIACKLCHKA 315
           C  CPQC     L  R LR  P + + +E  +D       A + C+LC KA
Sbjct: 125 CITCPQCHRSLILDDRGLRGFPKNRV-LEGVIDRYQQSKAAALKCQLCEKA 174


>sp|P37370|VRP1_YEAST Verprolin OS=Saccharomyces cerevisiae GN=VRP1
           PE=1 SV=2
          Length = 817

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
 Frame = +3

Query: 129 LSQTPETSTPNVPSMSTMPTCQVSMPSR-------LACGTNLSHGHRSGTRLP 266
           +S+ P  S P  PS STM T   + PS+          G+ L H H + T  P
Sbjct: 696 ISKNPTKSPPPPPSPSTMDTGTSNSPSKNLKQRLFSTGGSTLQHKHNTHTNQP 748
tr_hit_id A7Q1F1
Definition tr|A7Q1F1|A7Q1F1_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 50
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913776|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B06.
         (318 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1F1|A7Q1F1_VITVI Chromosome chr7 scaffold_44, whole genome...    36   0.84 
tr|A6SLQ9|A6SLQ9_BOTFB Putative uncharacterized protein OS=Botry...    36   1.1  
tr|B0U6F0|B0U6F0_XYLFM Putative uncharacterized protein OS=Xylel...    35   1.4  
tr|A7EUW3|A7EUW3_SCLS1 Putative uncharacterized protein OS=Scler...    34   3.2  
tr|A8LV97|A8LV97_SALAI Putative uncharacterized protein OS=Salin...    33   9.3  

>tr|A7Q1F1|A7Q1F1_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028438001
           PE=4 SV=1
          Length = 1428

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 93  HAKICITHLSSPLSQTPETSTPNVPSMSTMPTCQVSMPSRLACGTNLSHG 242
           HA   +   SS +S TP+TS P++P   T     +   S L  GT++S G
Sbjct: 499 HASPSLREKSSQISFTPQTSAPHLPGYGTSAIVAMDRSSSLPSGTSISSG 548


>tr|A6SLQ9|A6SLQ9_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_13492
           PE=4 SV=1
          Length = 283

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 63  NHRTDLTSICHAKICITHLSSPLSQTPETSTPNVPSMSTMPTCQVSMPSRLACGTNLSHG 242
           N RTD+TS C +   +    +PL++      P + S+S   +C    P++L    +L HG
Sbjct: 178 NTRTDITSFCQSNGIVVEAYAPLARALRMKHPKIVSLSKKYSCS---PAQLLVKWSLQHG 234

Query: 243 H 245
           +
Sbjct: 235 Y 235


>tr|B0U6F0|B0U6F0_XYLFM Putative uncharacterized protein OS=Xylella
           fastidiosa (strain M12) GN=Xfasm12_2277 PE=4 SV=1
          Length = 157

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +3

Query: 66  HRTDLTSICHAKICITHLSSPLSQTPETSTPNVPSMSTMPTCQVSMPSRLACGTNLSHGH 245
           HR  +T      IC+ +  SP  Q    S P VP  + +PT + S    L   T  +H  
Sbjct: 17  HRVSMTRATPPWICVDN--SPCPQCTHESAPAVPMQTPIPTRKASTLMTLTALTQRAHRQ 74

Query: 246 RSGTRLPCRH 275
           R  + +P  H
Sbjct: 75  RIASAIPMLH 84


>tr|A7EUW3|A7EUW3_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_09121 PE=4 SV=1
          Length = 283

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 63  NHRTDLTSICHAKICITHLSSPLSQTPETSTPNVPSMSTMPTCQVSMPSRLACGTNLSHG 242
           N RT++TS C +   +    +PL Q    + P + S+S   +C    P++L    +L HG
Sbjct: 178 NTRTNITSFCQSNGIVVEAYAPLVQALRMTHPKIVSLSRKYSC---TPAQLLVRWSLQHG 234

Query: 243 H 245
           +
Sbjct: 235 Y 235


>tr|A8LV97|A8LV97_SALAI Putative uncharacterized protein
           OS=Salinispora arenicola (strain CNS-205) GN=Sare_4835
           PE=4 SV=1
          Length = 1168

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 36  DIAVTNILSNHRTDLTSICHAKICITHLSSPLSQTPETSTPNVPSMSTMPTCQVSMPSRL 215
           D++V  I S     +  I   ++ +  +S+P   TP+ STP+V     +P+ +VS P  L
Sbjct: 240 DLSVPEI-STPEVSMPEISTPEVSMPEISTPDVSTPDLSTPDVSPPGEIPSPEVSSPGEL 298