BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913781|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B12.
         (281 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HE02|SSN2_SCHPO Mediator of RNA polymerase II transcription...    29   8.3  
sp|Q8EDM4|DEOD3_SHEON Purine nucleoside phosphorylase deoD-type ...    29   8.3  

>sp|Q9HE02|SSN2_SCHPO Mediator of RNA polymerase II transcription
           subunit 13 OS=Schizosaccharomyces pombe GN=srb9 PE=1
           SV=1
          Length = 1223

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +2

Query: 17  RHYLAWYQHPYLINFNIISTPFLVAPTVPQRISRFKPKSLHQVKFAHLSCV*ISSVLTDK 196
           + Y+   Q P++++  + ++ FL+   +P   S      +H +         I ++LTD+
Sbjct: 6   KKYVKMRQWPHVLSLRVYASYFLLYNNLPLS-SAMVHDGVHLIS--------IKTILTDQ 56

Query: 197 PCSPTVMYS 223
           PC  T+ Y+
Sbjct: 57  PCPNTIYYA 65


>sp|Q8EDM4|DEOD3_SHEON Purine nucleoside phosphorylase deoD-type
           OS=Shewanella oneidensis GN=deoD3 PE=3 SV=1
          Length = 234

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = -3

Query: 216 ITVGEHGLSVSTEEI*THER*ANFT*CSDFGLNLEIRCGTVGATKKGVEI 67
           I+V  HG+ +S+  +  HE   NF     FG+   IR G++GAT++ VE+
Sbjct: 57  ISVMGHGMGISSMVLYGHEL-INF-----FGVKRIIRIGSLGATQQHVEM 100

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913781|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_B12.
         (281 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******