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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913792
Clone id YMU001_000035_D01
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCCAATATGTTGTGATTGCATTGAATACTTTGGTATTGTCTTT
TACATCCACAAAGCCCAAATGGTGATAGACCATTTGAGTTTCCAGCATGCTCGACACATC
TTTCCCACTTCTGCAAGCTCGAGCAAAATGTGTGTGTATATGCTTCACAGCCCCAGTGAG
ATCTCTCCCTTGGCCAGGTTGTAACTACAGCCAGCTCCTTTTTGGAGGCTAGCCTTTGGT
TCCACCTCTACAACTACCTCTTATTCAGGACTGGGTGCAACTACAATAGGCTCTACCATC
TTCCCATTTGGTGTCTCCTCAGGAGCCTCCATAGGTGTTCCTTCAGCGGGAACACTTGCT
GGGTTTTCAGCAGCATCCAGTTTACCATCCAGCACTGCAGGGGGTGCTTTCTCCTCCACA
GGTTTTACCTTTTCTACACTCTTCACAGATCGCACTTCCTCCTCCTCTTTCCCTTCTATA
TCCTCTAAATCAGGTATCCCTTCCTCCTTGCGCACACGGTTATTATCAGGTGC
■■Homology search results ■■ -
sp_hit_id Q109B0
Definition sp|Q109B0|MT21A_ORYSJ Class II metallothionein-like protein 1A OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913792|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D01.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q109B0|MT21A_ORYSJ Class II metallothionein-like protein 1A O...    33   1.0  
sp|Q8NH06|OR1P1_HUMAN Olfactory receptor 1P1 OS=Homo sapiens GN=...    32   1.3  
sp|Q14D04|MELT_HUMAN Ventricular zone-expressed PH domain-contai...    32   1.7  
sp|Q9NTG7|SIRT3_HUMAN NAD-dependent deacetylase sirtuin-3, mitoc...    31   2.9  
sp|Q5PQS3|MELT_RAT Ventricular zone-expressed PH domain-containi...    31   2.9  
sp|A1A535|MELT_MOUSE Ventricular zone-expressed PH domain-contai...    31   2.9  
sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster ...    31   2.9  
sp|Q87WL6|KATG_PSESM Catalase-peroxidase OS=Pseudomonas syringae...    30   5.0  
sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein...    30   5.1  
sp|Q48E42|KATG_PSE14 Catalase-peroxidase OS=Pseudomonas syringae...    30   6.5  
sp|Q2G479|KATG_NOVAD Catalase-peroxidase OS=Novosphingobium arom...    30   6.5  
sp|O77627|JUN_BOVIN Transcription factor AP-1 OS=Bos taurus GN=J...    30   6.5  
sp|Q0P4X6|ZBT44_XENTR Zinc finger and BTB domain-containing prot...    30   6.7  
sp|Q3SWU4|ZBT44_RAT Zinc finger and BTB domain-containing protei...    30   6.7  
sp|Q8R0A2|ZBT44_MOUSE Zinc finger and BTB domain-containing prot...    30   6.7  
sp|Q8NCP5|ZBT44_HUMAN Zinc finger and BTB domain-containing prot...    30   6.7  
sp|Q17QD8|ETBR2_BOVIN Endothelin B receptor-like protein 2 OS=Bo...    30   6.7  
sp|Q5V211|TRPD_HALMA Anthranilate phosphoribosyltransferase OS=H...    30   8.5  
sp|Q5RBY9|ZNF2_PONAB Zinc finger protein 2 OS=Pongo abelii GN=ZN...    30   8.7  
sp|Q29RZ4|ZNF2_BOVIN Zinc finger protein 2 OS=Bos taurus GN=ZNF2...    30   8.7  
sp|Q8BV42|ZN786_MOUSE Zinc finger protein 786 OS=Mus musculus GN...    30   8.7  

>sp|Q109B0|MT21A_ORYSJ Class II metallothionein-like protein 1A
           OS=Oryza sativa subsp. japonica GN=MT21A PE=2 SV=1
          Length = 87

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 23/70 (32%), Positives = 28/70 (40%)
 Frame = -3

Query: 427 CEECRKGKTCGGESTPCSAGW*TGCC*KPSKCSR*RNTYGGS*GDTKWEDGRAYCSCTQS 248
           C      ++ GG+ T CS G   GC   P +C R     G        E+ RA CSC  S
Sbjct: 19  CRCASSARSGGGDHTTCSCGDHCGC--NPCRCGRESQPTGR-------ENRRAGCSCGDS 69

Query: 247 *IRGSCRGGT 218
               SC   T
Sbjct: 70  CTCASCGSTT 79


>sp|Q8NH06|OR1P1_HUMAN Olfactory receptor 1P1 OS=Homo sapiens
           GN=OR1P1 PE=2 SV=2
          Length = 330

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 262 YNRLYHLPIWCLLRSLHRCSFSGNTCWVFSSI 357
           Y  + HL  + ++ SLHRC+F    CW  +S+
Sbjct: 137 YVAICHLLHYMMIMSLHRCAFLVTACWTLTSL 168


>sp|Q14D04|MELT_HUMAN Ventricular zone-expressed PH
           domain-containing protein homolog 1 OS=Homo sapiens
           GN=VEPH1 PE=1 SV=1
          Length = 833

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -3

Query: 175 GQGRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAI 11
           GQ   + GAV H+    AR+C +   VS +   +  +HH+  +++K  T  F++I
Sbjct: 288 GQMARIYGAVGHVDEERARSCLTYL-VSQLANMEHSFHHILLLEIKSITDTFSSI 341


>sp|Q9NTG7|SIRT3_HUMAN NAD-dependent deacetylase sirtuin-3,
           mitochondrial OS=Homo sapiens GN=SIRT3 PE=1 SV=2
          Length = 399

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 155 WGCEAYTHTFCSSLQKWERCVEHAGNSNGLSPFGLCGCK 39
           WG  A      ++L+ W R VE      G+ PF  CGC+
Sbjct: 4   WGWRA-----AAALRLWGRVVERVEAGGGVGPFQACGCR 37


>sp|Q5PQS3|MELT_RAT Ventricular zone-expressed PH domain-containing
           protein homolog 1 OS=Rattus norvegicus GN=Veph1 PE=2
           SV=1
          Length = 832

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 175 GQGRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAI 11
           GQ   + GAV H+    AR+C     VS +   +  +HH+  +++K  T  F++I
Sbjct: 288 GQMARIFGAVGHVDEERARSCLRYL-VSQLANMEHSFHHILLLEIKSLTDAFSSI 341


>sp|A1A535|MELT_MOUSE Ventricular zone-expressed PH
           domain-containing protein 1 OS=Mus musculus GN=Veph1
           PE=2 SV=1
          Length = 833

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 175 GQGRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAI 11
           GQ   + GAV H+    AR+C     VS +   +  +HH+  +++K  T  F++I
Sbjct: 288 GQMARIFGAVGHVDEERARSCLRYL-VSQLANMEHPFHHILLLEIKSITDAFSSI 341


>sp|Q86S05|LIG_DROME Protein lingerer OS=Drosophila melanogaster
           GN=lig PE=1 SV=1
          Length = 1375

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 319 NTYGGS*GDTKWEDGRAYCSCTQ-S*IRGSCRGGTKG*PPKRSW 191
           NT  G+ GD  W DG       + S  R S RGGT+G    R W
Sbjct: 144 NTADGAAGDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRGW 187


>sp|Q87WL6|KATG_PSESM Catalase-peroxidase OS=Pseudomonas syringae
           pv. tomato GN=katG PE=3 SV=1
          Length = 756

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 241 RGSCRGGTKG*PPKRSWL*LQPGQGRDLTGAVKHIHTHFARACRSGKDVS 92
           RG   GG     P++ W   QP Q  ++   ++ I + F  A  +GK VS
Sbjct: 505 RGGANGGRLRLAPQKDWAVNQPAQLANVLSTLESIQSEFNAAQSNGKKVS 554


>sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein
           OS=Homo sapiens GN=PKD2L2 PE=2 SV=1
          Length = 624

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 202 LEASLWFHLYNYLLFRTGCNYNRLYHLPIWCLLRSLHRCSFSGNTCWVFSSIQFTIQHCR 381
           LE   W   YN        N +R+Y+  I   +  + +     NTC V+SS Q  +  C 
Sbjct: 96  LEGLYWDSWYNNQQLYNLKNSSRIYYENILLGVPRVRQLKVRNNTCKVYSSFQSLMSECY 155

Query: 382 G 384
           G
Sbjct: 156 G 156


>sp|Q48E42|KATG_PSE14 Catalase-peroxidase OS=Pseudomonas syringae
           pv. phaseolicola (strain 1448A / Race 6) GN=katG PE=3
           SV=1
          Length = 756

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 241 RGSCRGGTKG*PPKRSWL*LQPGQGRDLTGAVKHIHTHFARACRSGKDVS 92
           RG   GG     P++ W   QP Q   +   ++ I + F  A  SGK VS
Sbjct: 505 RGGANGGRLRLAPQKDWAVNQPAQLAGVLKTLEGIQSEFNAAQSSGKQVS 554
tr_hit_id A7P8E4
Definition tr|A7P8E4|A7P8E4_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913792|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D01.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P8E4|A7P8E4_VITVI Chromosome chr3 scaffold_8, whole genome ...    52   1e-05
tr|Q8BGH1|Q8BGH1_MOUSE Putative uncharacterized protein OS=Mus m...    52   2e-05
tr|A9S7Q5|A9S7Q5_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.15 
tr|A9S1M6|A9S1M6_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.15 
tr|A9S735|A9S735_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.19 
tr|Q7X997|Q7X997_ORYSJ Os09g0542500 protein OS=Oryza sativa subs...    37   0.56 
tr|A9RKX2|A9RKX2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.56 
tr|A3C141|A3C141_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.56 
tr|A2Z3M3|A2Z3M3_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.56 
tr|A7R729|A7R729_VITVI Chromosome undetermined scaffold_1540, wh...    36   1.3  
tr|A7R5F9|A7R5F9_VITVI Chromosome undetermined scaffold_957, who...    36   1.3  
tr|A3THC4|A3THC4_9MICO Putative uncharacterized protein OS=Janib...    34   3.7  
tr|A7P7D2|A7P7D2_VITVI Chromosome chr9 scaffold_7, whole genome ...    34   3.7  
tr|A5B8V5|A5B8V5_VITVI Putative uncharacterized protein OS=Vitis...    34   3.7  
tr|B4PXI5|B4PXI5_DROYA GE15396 OS=Drosophila yakuba GN=GE15396 P...    34   3.7  
tr|Q5XV54|Q5XV54_ARATH Putative uncharacterized protein OS=Arabi...    33   8.1  
tr|B8LQT1|B8LQT1_PICSI Putative uncharacterized protein OS=Picea...    33   8.1  

>tr|A7P8E4|A7P8E4_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036148001
           PE=4 SV=1
          Length = 583

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
 Frame = -3

Query: 178 PGQGRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDN-TKVFNAIT 8
           P +GR+L  A+K I  HF RA  SGKDVS MLE   V+   G  ++K N TK+  AIT
Sbjct: 107 PARGRELLDALKDIEDHFIRAYDSGKDVSRMLEASRVHMLSGLEEIKGNSTKLIQAIT 164


>tr|Q8BGH1|Q8BGH1_MOUSE Putative uncharacterized protein OS=Mus
           musculus PE=2 SV=1
          Length = 642

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDN 32
           GR+L  A+K +  HF RAC SG +VS MLE + +  H  F D+KDN
Sbjct: 177 GRELLEALKDVEDHFLRACESGMEVSKMLEVEKIPSHPTFEDIKDN 222


>tr|A9S7Q5|A9S7Q5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_11802 PE=4 SV=1
          Length = 597

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVD 44
           GRDL   +K +   F RA  SG++VS +LET+  ++H  F D
Sbjct: 220 GRDLLDVLKEVDECFLRAADSGENVSRILETKKAHYHSSFSD 261


>tr|A9S1M6|A9S1M6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122628 PE=4 SV=1
          Length = 594

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 166 RDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVD 44
           RDL   +K +  HF +A   G+D+S +LET+  + H  F D
Sbjct: 201 RDLLDVLKEVDDHFLQAAERGEDISRILETKKTHFHTSFSD 241


>tr|A9S735|A9S735_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125175 PE=4 SV=1
          Length = 685

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 166 RDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVD 44
           RDL   +K +  +F +A  SG++V+ MLET+  ++H  F D
Sbjct: 261 RDLLDVLKEVDDYFLKAAESGENVARMLETKKAHYHSSFSD 301


>tr|Q7X997|Q7X997_ORYSJ Os09g0542500 protein OS=Oryza sativa subsp.
           japonica GN=P0478E02.15 PE=4 SV=1
          Length = 722

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAIT 8
           GR+L  A+K I   FARA  +GK+V++MLE       L     ++++K+ +AIT
Sbjct: 249 GRELLAALKEIEELFARAAEAGKEVTAMLEAASRVPEL----KENSSKIIHAIT 298


>tr|A9RKX2|A9RKX2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_115979 PE=4 SV=1
          Length = 608

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVD 44
           GRDL   +K +   F +A  SG+ VS++L+T+  ++H  F D
Sbjct: 212 GRDLLEVLKEVDECFVKAAESGEIVSTLLDTKKAHYHSNFSD 253


>tr|A3C141|A3C141_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_029013 PE=4 SV=1
          Length = 806

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAIT 8
           GR+L  A+K I   FARA  +GK+V++MLE       L     ++++K+ +AIT
Sbjct: 258 GRELLAALKEIEELFARAAEAGKEVTAMLEAASRVPEL----KENSSKIIHAIT 307


>tr|A2Z3M3|A2Z3M3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32233 PE=4 SV=1
          Length = 618

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 21/54 (38%), Positives = 33/54 (61%)
 Frame = -3

Query: 169 GRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVKDNTKVFNAIT 8
           GR+L  A+K I   FARA  +GK+V++MLE       L     ++++K+ +AIT
Sbjct: 145 GRELLAALKEIEELFARAAEAGKEVTAMLEAASRVPEL----KENSSKIIHAIT 194


>tr|A7R729|A7R729_VITVI Chromosome undetermined scaffold_1540, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00008538001 PE=4 SV=1
          Length = 286

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 172 QGRDLTGAVKHIHTHFARACRSGKDVSSMLETQMVYHHLGFVDVK 38
           + +D   ++K I   F RA  SGK+VS MLET  +   +G+ D K
Sbjct: 240 RAKDFLSSIKDIEHRFFRASESGKEVSRMLETNKI--GMGYCDAK 282