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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP913798
Clone id YMU001_000035_D07
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTACCTGCTGAAAAGCACGGCTGGCTTGCTTTGTTACAAGCTGATGTAGATACAAGTACA
GAGCTGGATGTAATTGTAGAATTTCTTCAGGGAGTTTTGACACACCCCGTCATGAATGCT
CAGTTTGAAGCAGCCAAGTATCCTTCACCCACAGCACCATCAGATTGCGATGAGGGAAAG
ACTATGATTGATGAGCTTTTAGTCCCTCAAGTCGTTGAACAATGGTTTCAGAAAGGTGCA
TGTGGGCTTTCCTTGCACCTTACTCACACAGTTGCCATCTTTAAGGAGCTCTTGCAATGG
GCAGCTGAGCCACCTAGCAGGGATTATCCTGGAGCATTTCAGAAAGATTGTCAATCGCTA
CAGCGGGTTGTCTTGTCATCCTGTAAACCTTTTCTTAGTGAAGTATTTCTCGCTGCAAAG
ACAGCTGTTGCTAAAACAGAACAGGCAGGCAGATTTTTTCCAAATGTACCAGTTTACCTA
GCTTTTACCTTCTCATCTTATATTGACATCAATTTATTGGCGGAACTTGCATGTACCTTA
CTTTCCGAAGAGCTTACTGAAAAGGT
■■Homology search results ■■ -
sp_hit_id Q3ZAV8
Definition sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattus norvegicus
Align length 129
Score (bit) 37.4
E-value 0.052
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913798|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D07.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattu...    37   0.052
sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus...    37   0.052
sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Hom...    37   0.068
sp|Q5PQ89|AN34B_XENLA Ankyrin repeat domain-containing protein 3...    32   2.2  

>sp|Q3ZAV8|EDC4_RAT Enhancer of mRNA-decapping protein 4 OS=Rattus
            norvegicus GN=Edc4 PE=2 SV=1
          Length = 1407

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 33/129 (25%), Positives = 54/129 (41%)
 Frame = +1

Query: 61   ELDVIVEFLQGVLTHPVMNAQFEAAKYPSPTAPSDCDEGKTMIDELLVPQVVEQWFQKGA 240
            E+ V ++  Q  +T  +M A   AA  P P+A  DC   +  I +LL    + Q FQ+  
Sbjct: 1232 EVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQAL 1291

Query: 241  CGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLSEVFLAAK 420
                L+L   V    +  Q   +PP           C   Q V+LS  +   S++   + 
Sbjct: 1292 TAADLNLVLYVCETVDPAQVFGQPP-----------CPLSQPVLLSLIQQLASDLGTRSD 1340

Query: 421  TAVAKTEQA 447
              ++  E+A
Sbjct: 1341 LKLSYLEEA 1349


>sp|Q3UJB9|EDC4_MOUSE Enhancer of mRNA-decapping protein 4 OS=Mus
            musculus GN=Edc4 PE=1 SV=2
          Length = 1406

 Score = 37.4 bits (85), Expect = 0.052
 Identities = 33/129 (25%), Positives = 54/129 (41%)
 Frame = +1

Query: 61   ELDVIVEFLQGVLTHPVMNAQFEAAKYPSPTAPSDCDEGKTMIDELLVPQVVEQWFQKGA 240
            E+ V ++  Q  +T  +M A   AA  P P+A  DC   +  I +LL    + Q FQ+  
Sbjct: 1231 EVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQAL 1290

Query: 241  CGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLSEVFLAAK 420
                L+L   V    +  Q   +PP           C   Q V+LS  +   S++   + 
Sbjct: 1291 TAADLNLVLYVCETVDPAQVFGQPP-----------CPLSQPVLLSLIQQLASDLGTRSD 1339

Query: 421  TAVAKTEQA 447
              ++  E+A
Sbjct: 1340 LKLSYLEEA 1348


>sp|Q6P2E9|EDC4_HUMAN Enhancer of mRNA-decapping protein 4 OS=Homo
            sapiens GN=EDC4 PE=1 SV=1
          Length = 1401

 Score = 37.0 bits (84), Expect = 0.068
 Identities = 33/129 (25%), Positives = 53/129 (41%)
 Frame = +1

Query: 61   ELDVIVEFLQGVLTHPVMNAQFEAAKYPSPTAPSDCDEGKTMIDELLVPQVVEQWFQKGA 240
            E+ V ++  Q  +T  +M A   AA  P P+A  DC   +  I +LL    + Q FQ+  
Sbjct: 1226 EVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQAL 1285

Query: 241  CGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLSEVFLAAK 420
                L+L   V    +  Q   +PP           C   Q V+LS  +   S++     
Sbjct: 1286 TAADLNLVLYVCETVDPAQVFGQPP-----------CPLSQPVLLSLIQQLASDLGTRTD 1334

Query: 421  TAVAKTEQA 447
              ++  E+A
Sbjct: 1335 LKLSYLEEA 1343


>sp|Q5PQ89|AN34B_XENLA Ankyrin repeat domain-containing protein 34B
           OS=Xenopus laevis GN=ankrd34b PE=2 SV=1
          Length = 521

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +1

Query: 289 LLQWAAEPPSRDYPG------AFQKDCQSLQRVVLSSCKPFLSEVFLAAKTAVAKTEQAG 450
           LL+  A+P  +D+ G      A   + +   R++L++CK    EV +  K   A  +Q  
Sbjct: 104 LLESGADPSLQDHTGFSALVYAVNSEDKETLRILLNACKAKGKEVIIITKDKSASGKQTT 163

Query: 451 RFFPNVP 471
           R + NVP
Sbjct: 164 RQYLNVP 170
tr_hit_id Q6QI93
Definition tr|Q6QI93|Q6QI93_RAT LRRG00115 OS=Rattus norvegicus
Align length 129
Score (bit) 37.4
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913798|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D07.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6QI93|Q6QI93_RAT LRRG00115 OS=Rattus norvegicus GN=LOC361399...    37   0.58 
tr|A8K4T4|A8K4T4_HUMAN cDNA FLJ76807, highly similar to Homo sap...    37   0.75 
tr|Q6AAA2|Q6AAA2_PROAC Membrane spanning protein OS=Propionibact...    35   2.2  
tr|Q7VA69|Q7VA69_PROMA Nicotinic acid mononucleotide adenylyltra...    34   4.9  
tr|B0ISJ1|B0ISJ1_RHILT DNA polymerase III, delta subunit OS=Rhiz...    34   6.4  
tr|B5GNL2|B5GNL2_STRCL Putative uncharacterized protein (Fragmen...    33   8.3  

>tr|Q6QI93|Q6QI93_RAT LRRG00115 OS=Rattus norvegicus GN=LOC361399 PE=2
            SV=1
          Length = 1519

 Score = 37.4 bits (85), Expect = 0.58
 Identities = 33/129 (25%), Positives = 54/129 (41%)
 Frame = +1

Query: 61   ELDVIVEFLQGVLTHPVMNAQFEAAKYPSPTAPSDCDEGKTMIDELLVPQVVEQWFQKGA 240
            E+ V ++  Q  +T  +M A   AA  P P+A  DC   +  I +LL    + Q FQ+  
Sbjct: 1179 EVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQAL 1238

Query: 241  CGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLSEVFLAAK 420
                L+L   V    +  Q   +PP           C   Q V+LS  +   S++   + 
Sbjct: 1239 TAADLNLVLYVCETVDPAQVFGQPP-----------CPLSQPVLLSLIQQLASDLGTRSD 1287

Query: 421  TAVAKTEQA 447
              ++  E+A
Sbjct: 1288 LKLSYLEEA 1296


>tr|A8K4T4|A8K4T4_HUMAN cDNA FLJ76807, highly similar to Homo sapiens
            autoantigen (RCD-8), mRNA OS=Homo sapiens GN=RCD-8 PE=2
            SV=1
          Length = 1401

 Score = 37.0 bits (84), Expect = 0.75
 Identities = 33/129 (25%), Positives = 53/129 (41%)
 Frame = +1

Query: 61   ELDVIVEFLQGVLTHPVMNAQFEAAKYPSPTAPSDCDEGKTMIDELLVPQVVEQWFQKGA 240
            E+ V ++  Q  +T  +M A   AA  P P+A  DC   +  I +LL    + Q FQ+  
Sbjct: 1226 EVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLDCQAQQAHILQLLQQGHLNQAFQQAL 1285

Query: 241  CGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLSEVFLAAK 420
                L+L   V    +  Q   +PP           C   Q V+LS  +   S++     
Sbjct: 1286 TAADLNLVLYVCETVDPAQVFGQPP-----------CPLSQPVLLSLIQQLASDLGTRTD 1334

Query: 421  TAVAKTEQA 447
              ++  E+A
Sbjct: 1335 LKLSYLEEA 1343


>tr|Q6AAA2|Q6AAA2_PROAC Membrane spanning protein
           OS=Propionibacterium acnes GN=PPA0559 PE=4 SV=1
          Length = 408

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 33/119 (27%), Positives = 46/119 (38%)
 Frame = +1

Query: 196 LLVPQVVEQWFQKGACGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVL 375
           L+  Q+  QW Q G          +VA FK+ LQW A+ P            Q  +  + 
Sbjct: 133 LVGAQIALQWRQLG--------DQSVASFKQALQWLAKSPLHTNEAQLTHLMQKAEAAMA 184

Query: 376 SSCKPFLSEVFLAAKTAVAKTEQAGRFFPNVPVYLAFTFSSYIDINLLAELACTLLSEE 552
            S           A TA A   Q GRF   + + L  TF    + + LAE +  L+  E
Sbjct: 185 GSQGRI-------ASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPRE 236


>tr|Q7VA69|Q7VA69_PROMA Nicotinic acid mononucleotide
           adenylyltransferase OS=Prochlorococcus marinus GN=nadD
           PE=4 SV=1
          Length = 195

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 244 GLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQKDCQSLQRVVLSSCKPFLS-EVFLAAK 420
           G  + LT    IF +++ WA++ PS+ +  +  +  + L  +V +   P L  +  L++K
Sbjct: 22  GHKILLTELSKIFPKVVTWASDNPSKSHKTSLNQRYELLNTLVEAIALPNLELKQELSSK 81

Query: 421 TAVAKTEQAGRFFPNVPVYLAFTFSSYIDI 510
            A+   E+A + +PN  + L        DI
Sbjct: 82  WAIKTLERAAKHWPNKGLILIIGSDLVTDI 111


>tr|B0ISJ1|B0ISJ1_RHILT DNA polymerase III, delta subunit
           OS=Rhizobium leguminosarum bv. trifolii WSM1325
           GN=RlegDRAFT_0419 PE=4 SV=1
          Length = 402

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 169 DEGKTMIDE--LLVPQVVEQWFQKGACGLSLHLTHTVAIFKELLQWAAEPPSRDYPGAFQ 342
           D  +  +DE  L  PQ+++        G  LH      I + L QW AE  +R+      
Sbjct: 317 DSMRAEMDEKRLQTPQIMQ------TMGRHLHFRRKPIIEQALRQWTAESIARE------ 364

Query: 343 KDCQSLQRVVLSSCKPFLSEVFLAAKTAVAKTEQAGR 453
             C  LQ  +L S +  + E  +A +T ++ T Q+GR
Sbjct: 365 --CNRLQAAILQSRRRQVLEDSVAMQTLLSTTLQSGR 399


>tr|B5GNL2|B5GNL2_STRCL Putative uncharacterized protein (Fragment)
           OS=Streptomyces clavuligerus ATCC 27064 GN=SSCG_01029
           PE=4 SV=1
          Length = 255

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
 Frame = +2

Query: 218 NNGFRKVHVGFP--CTLLTQLPSLRS------------SCNGQLSHLAGIILEHFRKIV 352
           N GF K H G    C     LPS+RS            SC  QL+HLAG+   H  +I+
Sbjct: 192 NFGFEKGHFGISAACAEEQLLPSVRSAEPGTEFLADGYSCRTQLAHLAGVRARHLAEII 250