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NBDC - LSDB Archive
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BP913800
Clone id YMU001_000035_D10
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000035_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGGCTCTCTGCCTAGCTGAAAATATCCCTTCGGAATCTCTCCACGGCAAGTACAAGTG
TCTTATCCATAAGACACCTCTGGNTCCTTGTAGATTGTCGTTGAATCGTGAAAAGTAACA
CGATCCAGAAAGCATGGACAGAGAAGCCAAGAGATACCCTCCCTCAGAATATCACTGTGG
CAATTGTAGTGCTCCTGAGGCTCGACCTCCTGATAGCTCAACGCACATATGTGGTCTTTT
ACTGATGGATGTACATATCCACCTAGCTCAACTCCCGACTTGTGTCAAGAGGTGCAAGTC
TGTTTGATGGCGCACCGAGTACAATGCGAGGGGAACGTCCATGTATGCAGGTGCACGATA
CCCATTCAAAGAGGTAGAAATTGCCGTATCGTTTTCATACCCAGCTATATGACAGGCAGA
TCCATGTCCTTCAAATCCTATTGCACAATACTCATTTCTTGATACGGCTCCTAGCAGCAA
AGCTTTGAGTGGAGGCTGT
■■Homology search results ■■ -
sp_hit_id P97764
Definition sp|P97764|WBP1_MOUSE WW domain-binding protein 1 OS=Mus musculus
Align length 79
Score (bit) 34.7
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913800|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D10.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97764|WBP1_MOUSE WW domain-binding protein 1 OS=Mus musculus...    35   0.25 
sp|Q5HAM0|GPDA_EHRRW Glycerol-3-phosphate dehydrogenase [NAD(P)+...    32   1.6  
sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens...    32   2.1  
sp|Q5FG15|GPDA_EHRRG Glycerol-3-phosphate dehydrogenase [NAD(P)+...    32   2.1  
sp|Q93FR9|GPDA_EHRRU Glycerol-3-phosphate dehydrogenase [NAD(P)+...    31   2.8  
sp|O70617|IRK13_RAT Inward rectifier potassium channel 13 OS=Rat...    30   4.7  
sp|A2A884|ZEP3_MOUSE Transcription factor HIVEP3 OS=Mus musculus...    30   4.8  
sp|Q8K402|TBX22_MOUSE T-box transcription factor TBX22 OS=Mus mu...    30   6.3  
sp|P72186|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus GN=pls PE=1...    30   6.3  
sp|Q5FW56|FA70B_MOUSE Protein FAM70B OS=Mus musculus GN=Fam70b P...    30   6.3  
sp|O60928|IRK13_HUMAN Inward rectifier potassium channel 13 OS=H...    30   8.0  
sp|Q650H7|UVRC_BACFR UvrABC system protein C OS=Bacteroides frag...    30   8.2  
sp|Q5LIY7|UVRC_BACFN UvrABC system protein C OS=Bacteroides frag...    30   8.2  
sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protei...    30   8.2  
sp|Q13469|NFAC2_HUMAN Nuclear factor of activated T-cells, cytop...    30   8.2  

>sp|P97764|WBP1_MOUSE WW domain-binding protein 1 OS=Mus musculus
           GN=Wbp1 PE=1 SV=2
          Length = 304

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = -3

Query: 347 HTWTFPSHCTRCAIKQTCTS*HKSGVELGGYVHPSVKDHICALSYQEVEPQEHY------ 186
           + WT  S CTRC+ + +C++ H  G  + G     V     AL +QE EP+         
Sbjct: 182 YPWTTSSECTRCSSESSCSA-HLEGTNVEG-----VSSQQSALPHQEGEPRAGLSPVHIP 235

Query: 185 -NCHSDILREGISWLLCPC 132
            +C    L       LCPC
Sbjct: 236 PSCRYRRLTGDSGIELCPC 254


>sp|Q5HAM0|GPDA_EHRRW Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Ehrlichia ruminantium (strain Welgevonden) GN=gpsA
           PE=3 SV=1
          Length = 327

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
 Frame = -2

Query: 489 LKALLLGAVSRNEYCAIGFEGHGSACHIAGYENDTAISTSLNGYRA-----PAYMDVPLA 325
           +K  +LGA S     AI    HG + ++ G   D   +T +N YR      P Y  +P  
Sbjct: 1   MKISILGAGSFGTAIAIALSAHGISVNLWG--RDHRNTTHINTYRKNLKYLPTY-HLPDN 57

Query: 324 LYSVRHQTDLH-------LLTQVGS*ARWICTSISKRPHMC-----VELSGGRASGALQL 181
           +Y+  +  ++        +LT      R ICT I  + HMC     +  S G    +L+ 
Sbjct: 58  IYATSNIDEVLSDNNTCIILTIPTQQLRTICTQIQHKQHMCKNTPILICSKGIEITSLKF 117

Query: 180 PQ*YSEGGYLLASLSMLSGSCYFSRFNDNL 91
           P   +E       + +LSG  +     ++L
Sbjct: 118 PSEIAEEILQYNPIFILSGPSFAKEIAEHL 147


>sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens
           GN=HIVEP3 PE=1 SV=1
          Length = 2406

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +2

Query: 17  AENIPSESLHGKYKCLIHKTPLXPCRLSLNREK*HDPESMDREAKRYPPSEYHCGNCSAP 196
           A  IP E L G  K  + +    P ++SL   +    E+  +E K   P +Y C  CS P
Sbjct: 149 ASIIPPEDLPGVPKVFVPR----PSQVSLKPTE----EAHKKERKPQKPGKYICQYCSRP 200

Query: 197 EARPPDSSTHI 229
            A+P     HI
Sbjct: 201 CAKPSVLQKHI 211


>sp|Q5FG15|GPDA_EHRRG Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Ehrlichia ruminantium (strain Gardel) GN=gpsA PE=3
           SV=1
          Length = 327

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
 Frame = -2

Query: 489 LKALLLGAVSRNEYCAIGFEGHGSACHIAG--YENDTAISTSLNGYRAPAYMDVPLALYS 316
           +K  +LGA S     AI    HG + ++ G  + N T I+T     +      +P  +Y+
Sbjct: 1   MKISILGAGSFGTAIAIALSAHGISVNLWGRDHRNITHINTYRKNLKYLPTYHLPDNIYA 60

Query: 315 VRHQTDLH-------LLTQVGS*ARWICTSISKRPHMC-----VELSGGRASGALQLPQ* 172
             +  ++        +LT      R ICT I  + HMC     +  S G    +L+ P  
Sbjct: 61  TSNIDEVLSDNNTCIILTVPTQQLRTICTQIQHKQHMCKNTPMLICSKGIEITSLKFPSE 120

Query: 171 YSEGGYLLASLSMLSGSCYFSRFNDNL 91
            +E       + +LSG  +     ++L
Sbjct: 121 IAEEILQYNPIFILSGPSFAKEIAEHL 147


>sp|Q93FR9|GPDA_EHRRU Glycerol-3-phosphate dehydrogenase [NAD(P)+]
           OS=Ehrlichia ruminantium GN=gpsA PE=3 SV=1
          Length = 327

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
 Frame = -2

Query: 489 LKALLLGAVSRNEYCAIGFEGHGSACHIAG--YENDTAISTSLNGYRAPAYMDVPLALYS 316
           +K  +LGA S     AI    HG + ++ G  + N T I+T     +      +P  +Y+
Sbjct: 1   MKISILGAGSFGTAIAIALSAHGISVNLWGRDHRNITHINTYRKNLKYLPTYHLPDNIYA 60

Query: 315 VRHQTDLH-------LLTQVGS*ARWICTSISKRPHMC-----VELSGGRASGALQLPQ* 172
             +  ++        +LT      R ICT I  + HMC     +  S G    +L+ P  
Sbjct: 61  TSNIDEVLSDNNTCIILTIPTQQLRTICTQIQHKQHMCKNTPILICSKGIEITSLKFPSE 120

Query: 171 YSEGGYLLASLSMLSGSCYFSRFNDNL 91
            +E       + +LSG  +     ++L
Sbjct: 121 IAEEILQYNPIFILSGPSFAKEIAEHL 147


>sp|O70617|IRK13_RAT Inward rectifier potassium channel 13 OS=Rattus
           norvegicus GN=Kcnj13 PE=2 SV=1
          Length = 360

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 248 PSVKDHICALSYQEVEPQEHYNCHSDILREGISWLLCPCFLDRVTFHDSTT 96
           P     + A+ YQE E  E Y    D   +GIS   CP F+  +T++ + T
Sbjct: 198 PLTSVRVSAVLYQERENGELYQTSVDFHLDGISSEECPFFIFPLTYYHTIT 248


>sp|A2A884|ZEP3_MOUSE Transcription factor HIVEP3 OS=Mus musculus
           GN=Hivep3 PE=1 SV=1
          Length = 2348

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 17  AENIPSESLHGKYKCLIHKTPLXPCRLSLNREK*HDPESMDREAKRYPPSEYHCGNCSAP 196
           A  +P E L G  K  + +    P ++SL   +    E+  +E K   P +Y C  CS P
Sbjct: 142 ASILPPEELPGIPKVFVPR----PSQVSLKPAE----EAHKKERKPQKPGKYICQYCSRP 193

Query: 197 EARPPDSSTHI 229
            A+P     HI
Sbjct: 194 CAKPSVLQKHI 204


>sp|Q8K402|TBX22_MOUSE T-box transcription factor TBX22 OS=Mus
           musculus GN=Tbx22 PE=2 SV=1
          Length = 517

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 182 NCSAPEARPPDSSTHICGLLLMDVHIHLAQLPTCVKRCKSV*WRTE 319
           +CS P    P SS    G+   D ++H   +P C + C +  WR++
Sbjct: 339 SCSPPMVYIPPSSF---GMTYPDAYLHSVNIPFCYRICPTNNWRSQ 381


>sp|P72186|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus GN=pls PE=1
           SV=2
          Length = 1398

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 492 PLKALLLGAVSRNEYCAIGFEGHGSACHIAG 400
           PL  +L       EY   G++GHG   H+AG
Sbjct: 341 PLNYVLAEIDPNGEYAVFGWDGHGHGTHVAG 371


>sp|Q5FW56|FA70B_MOUSE Protein FAM70B OS=Mus musculus GN=Fam70b PE=2
           SV=2
          Length = 369

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
 Frame = +2

Query: 158 PPSEYHCGNCSAP--EARPPDSSTH-------------ICGLLLMDVHIHLAQLPTC 283
           PPS  H GN +AP   ARP  S+ H             +CGL    V+ H    P C
Sbjct: 55  PPSGGHFGNAAAPTARARPSGSAGHHRGLCQEEEDLSVVCGLSPAGVYSHPDHWPCC 111
tr_hit_id B4J5X5
Definition tr|B4J5X5|B4J5X5_DROGR GH20808 OS=Drosophila grimshawi
Align length 75
Score (bit) 36.6
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP913800|Adiantum capillus-veneris mRNA, clone:
YMU001_000035_D10.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4J5X5|B4J5X5_DROGR GH20808 OS=Drosophila grimshawi GN=GH2080...    37   0.67 
tr|B2WFV8|B2WFV8_PYRTR Putative uncharacterized protein OS=Pyren...    35   2.0  
tr|Q8C5Y4|Q8C5Y4_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.6  
tr|B3G0Y5|B3G0Y5_PSEAE Hypothetical phage protein OS=Pseudomonas...    34   3.3  
tr|A6N5P4|A6N5P4_PSEAE Phage late control D OS=Pseudomonas aerug...    33   5.7  
tr|Q9ZXJ8|Q9ZXJ8_9CAUD Orf27 OS=Pseudomonas phage phiCTX PE=4 SV=1     33   5.7  
tr|A0ZH56|A0ZH56_NODSP Peptidase M50 OS=Nodularia spumigena CCY ...    33   7.4  
tr|A9TEN4|A9TEN4_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.4  
tr|A9TAK7|A9TAK7_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.4  
tr|Q0IHD1|Q0IHD1_XENLA MGC154447 protein OS=Xenopus laevis GN=cd...    33   7.5  
tr|B0ETM3|B0ETM3_ENTDI Putative uncharacterized protein OS=Entam...    33   9.7  
tr|A0LSP4|A0LSP4_ACIC1 Glycogen debranching enzyme GlgX OS=Acido...    33   9.8  

>tr|B4J5X5|B4J5X5_DROGR GH20808 OS=Drosophila grimshawi GN=GH20808
           PE=4 SV=1
          Length = 1297

 Score = 36.6 bits (83), Expect = 0.67
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +2

Query: 50  KYKCLIHKTPLXPCRLSLNREK*HDPESMDREAKRYPPSE---YHCGNCSAPEARPPDSS 220
           K+K L  K P   C L   R           +AKRY   E   +HC NC+  + R PD  
Sbjct: 772 KFKLLHPKPPESVCSLDCERG----------QAKRYVEGESCCWHCFNCTTYQIRHPDDE 821

Query: 221 TH--ICGL-LLMDVH 256
           TH  +C L  L D H
Sbjct: 822 THCLVCQLGTLPDAH 836


>tr|B2WFV8|B2WFV8_PYRTR Putative uncharacterized protein
            OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
            GN=PTRG_08814 PE=4 SV=1
          Length = 1830

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 128  ESMDREAKRYPPSEYHCGNCSAPEARPPDSSTHICGLLLMDV 253
            ES+DR        E    +C +PEA+ PD++  ICG L++D+
Sbjct: 1049 ESIDRSRVHMEAFEKFFAHCLSPEAKYPDANLKICGELVVDL 1090


>tr|Q8C5Y4|Q8C5Y4_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Wbp1 PE=2 SV=1
          Length = 303

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = -3

Query: 347 HTWTFPSHCTRCAIKQTCTS*HKSGVELGGYVHPSVKDHICALSYQEVEPQEHY------ 186
           + WT  S CTRC+ + +C++ H  G  + G     V     AL +QE EP+         
Sbjct: 181 YPWTTSSECTRCSSESSCSA-HLEGTNVEG-----VSSQQSALPHQEGEPRAGLSPVHIP 234

Query: 185 -NCHSDILREGISWLLCPC 132
            +C    L       LCPC
Sbjct: 235 PSCRYRRLTGDSGIELCPC 253


>tr|B3G0Y5|B3G0Y5_PSEAE Hypothetical phage protein OS=Pseudomonas
           aeruginosa GN=PACL_0035 PE=4 SV=1
          Length = 422

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 390 DTAISTSLNGYRAPAYMDVPLALYSVRHQTDLHLLTQVGS*ARWICTSISKRPHMCVELS 211
           D AI  +L    APA   +P+      +++D +LLT++G     + T +     +C+   
Sbjct: 148 DIAIGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVAT-VKAGCLLCLPAG 206

Query: 210 GGRASGALQLP 178
           GG+ +  L LP
Sbjct: 207 GGKTASGLALP 217


>tr|A6N5P4|A6N5P4_PSEAE Phage late control D OS=Pseudomonas
           aeruginosa PE=4 SV=1
          Length = 428

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = -2

Query: 390 DTAISTSLNGYRAPAYMDVPLALYSVRHQTDLHLLTQVGS*ARWICTSISKRPHMCVELS 211
           D A+  +L    APA   +P+      +++D +LLT++G     + T +     +C+   
Sbjct: 148 DIALGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVAT-VKAGCLLCLPAG 206

Query: 210 GGRASGALQLP 178
           GG+++  L LP
Sbjct: 207 GGKSASGLGLP 217


>tr|Q9ZXJ8|Q9ZXJ8_9CAUD Orf27 OS=Pseudomonas phage phiCTX PE=4 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = -2

Query: 390 DTAISTSLNGYRAPAYMDVPLALYSVRHQTDLHLLTQVGS*ARWICTSISKRPHMCVELS 211
           D A+  +L    APA   +P+      +++D +LLT++G     + T +     +C+   
Sbjct: 148 DIALGNNLKPVLAPALAGLPILQLDQANESDANLLTRLGEDFDAVAT-VKAGCLLCLPAG 206

Query: 210 GGRASGALQLP 178
           GG+ +  L LP
Sbjct: 207 GGKTASGLALP 217


>tr|A0ZH56|A0ZH56_NODSP Peptidase M50 OS=Nodularia spumigena CCY
           9414 GN=N9414_02951 PE=4 SV=1
          Length = 504

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 208 RSSLRSTTIATVIF*GRVSLGFSVHAFWIVLLFTIQRQSTR 86
           R +    T AT+I  G +SLG S+  +W V++F +QR   R
Sbjct: 421 RKTAGRATAATLILLGLISLGNSLAIYWAVVIFFLQRDLER 461


>tr|A9TEN4|A9TEN4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194326 PE=4 SV=1
          Length = 118

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 24/95 (25%), Positives = 42/95 (44%)
 Frame = -2

Query: 414 CHIAGYENDTAISTSLNGYRAPAYMDVPLALYSVRHQTDLHLLTQVGS*ARWICTSISKR 235
           CH+A  ++D  IS    G    AY+   +   ++  + D  L T + + A   C      
Sbjct: 29  CHVA--DHDEIISKCFQGRNGRAYLFTNVVNVTIGVKEDRQLRTGLHTVADICC------ 80

Query: 234 PHMCVELSGGRASGALQLPQ*YSEGGYLLASLSML 130
            + C E+ G +   A +  Q Y EG Y+L  + ++
Sbjct: 81  -YQCQEVLGWKYEKAFEESQKYKEGKYILEKVKVM 114


>tr|A9TAK7|A9TAK7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193074 PE=4 SV=1
          Length = 118

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = -2

Query: 414 CHIAGYENDTAISTSLNGYRAPAYMDVPLALYSVRHQTDLHLLTQVGS*ARWICTSISKR 235
           CH+A  ++D  IS    G    AY+   +   ++  + D  LLT + + A   C      
Sbjct: 29  CHVA--DHDEIISKCFQGRNGRAYLFTNVVNVTLGAKEDRELLTGLHTVADICC------ 80

Query: 234 PHMCVELSGGRASGALQLPQ*YSEGGYLLASLSML 130
              C E+ G +   A +  Q Y EG Y+L    ++
Sbjct: 81  -FQCQEVLGWKYEKAFEESQKYKEGKYILEKAKVM 114


>tr|Q0IHD1|Q0IHD1_XENLA MGC154447 protein OS=Xenopus laevis GN=cd302
           PE=2 SV=1
          Length = 238

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 36  NLSTASTSVLSIRHLWXLVDCR*IVKSNTIQKAWTEKPRDTLP--QNITVAIVVLLRLDL 209
           NL T +T + +I  LW L+DC  + +  T+ K    +  +TLP  + +T+ +++ + L +
Sbjct: 131 NLITCTT-MSTITGLWDLIDCENVAEMGTLCKKTNAQNENTLPDLRALTITLIIFIVLVV 189

Query: 210 LIAQRTYVVFY 242
           L      +  Y
Sbjct: 190 LSVSAVLLGLY 200